RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 FPGTO14772 594 aa14.61□□□□□ -0.07
USP28-214ENST00000545540 LAMP1P11279 417 aa14.61□□□□□ -0.07
USP28-214ENST00000545540 ZNF691Q5VV52 312 aa14.61□□□□□ -0.07
USP28-214ENST00000545540 CYP2U1Q7Z449 544 aa14.61□□□□□ -0.07
USP28-214ENST00000545540 DSG4Q86SJ6 1040 aa14.61□□□□□ -0.07
USP28-214ENST00000545540 SYT12Q8IV01 421 aa14.61□□□□□ -0.07
USP28-214ENST00000545540 TMEM132CQ8N3T6 1108 aa14.61□□□□□ -0.07
USP28-214ENST00000545540 C2orf73Q8N5S3 287 aaPredicted RBP14.61□□□□□ -0.07
USP28-214ENST00000545540 CHST14Q8NCH0 376 aa14.61□□□□□ -0.07
USP28-214ENST00000545540 RORBQ92753 470 aa14.61□□□□□ -0.07
USP28-214ENST00000545540 ALG14Q96F25 216 aa14.61□□□□□ -0.07
USP28-214ENST00000545540 ABCB8Q9NUT2 735 aa14.61□□□□□ -0.07
USP28-214ENST00000545540 TMEM184CQ9NVA4 438 aa14.61□□□□□ -0.07
USP28-214ENST00000545540 THG1LQ9NWX6 298 aaKnown RBP14.61□□□□□ -0.07
USP28-214ENST00000545540 CFAP97Q9P2B7 532 aa14.61□□□□□ -0.07
USP28-214ENST00000545540 SH3GLB1Q9Y371 365 aa14.61□□□□□ -0.07
USP28-214ENST00000545540 SELPP16109 830 aa14.61□□□□□ -0.07
USP28-214ENST00000545540 PCMT1P22061 227 aa14.61□□□□□ -0.07
USP28-214ENST00000545540 PREPP48147 710 aa14.61□□□□□ -0.07
USP28-214ENST00000545540 GRSF1Q12849 480 aaKnown RBP eCLIP14.61□□□□□ -0.07
USP28-214ENST00000545540 RBM48Q5RL73 367 aaKnown RBP14.61□□□□□ -0.07
USP28-214ENST00000545540 CERS6Q6ZMG9 384 aa14.61□□□□□ -0.07
USP28-214ENST00000545540 ZCCHC7Q8N3Z6 543 aaKnown RBP14.61□□□□□ -0.07
USP28-214ENST00000545540 LEMD2Q8NC56 503 aa14.61□□□□□ -0.07
USP28-214ENST00000545540 CD99L2Q8TCZ2 262 aa14.61□□□□□ -0.07
USP28-214ENST00000545540 INIPQ9NRY2 104 aa14.61□□□□□ -0.07
USP28-214ENST00000545540 PLXNA3P51805 1871 aa14.61□□□□□ -0.07
USP28-214ENST00000545540 ZNF99A8MXY4 864 aaPredicted RBP14.6□□□□□ -0.07
USP28-214ENST00000545540 ZNF821O75541 412 aaPredicted RBP14.6□□□□□ -0.07
USP28-214ENST00000545540 SCELO95171 688 aa14.6□□□□□ -0.07
USP28-214ENST00000545540 EBLN1P0CF75 366 aa14.6□□□□□ -0.07
USP28-214ENST00000545540 COX7A2P14406 83 aa14.6□□□□□ -0.07
USP28-214ENST00000545540 PTPN6P29350 595 aa14.6□□□□□ -0.07
USP28-214ENST00000545540 BCAP31P51572 246 aa14.6□□□□□ -0.07
USP28-214ENST00000545540 PTSQ03393 145 aa14.6□□□□□ -0.07
USP28-214ENST00000545540 CATSPEREQ5SY80 951 aa14.6□□□□□ -0.07
USP28-214ENST00000545540 HORMAD1Q86X24 394 aa14.6□□□□□ -0.07
USP28-214ENST00000545540 CCDC71Q8IV32 467 aaPredicted RBP14.6□□□□□ -0.07
USP28-214ENST00000545540 PROX1Q92786 737 aa14.6□□□□□ -0.07
USP28-214ENST00000545540 TAMM41Q96BW9 452 aa14.6□□□□□ -0.07
USP28-214ENST00000545540 PLD4Q96BZ4 506 aa14.6□□□□□ -0.07
USP28-214ENST00000545540 PDLIM5Q96HC4 596 aaKnown RBP14.6□□□□□ -0.07
USP28-214ENST00000545540 REXO5Q96IC2 774 aaKnown RBP14.6□□□□□ -0.07
USP28-214ENST00000545540 COPS8Q99627 209 aa14.6□□□□□ -0.07
USP28-214ENST00000545540 RUBCNLQ9H714 662 aa14.6□□□□□ -0.07
USP28-214ENST00000545540 TESMINQ9Y4I5 508 aa14.6□□□□□ -0.07
USP28-214ENST00000545540 FAM20BO75063 409 aa14.6□□□□□ -0.07
USP28-214ENST00000545540 SPAM1P38567 509 aa14.6□□□□□ -0.07
USP28-214ENST00000545540 SEPHS1P49903 392 aa14.6□□□□□ -0.07
USP28-214ENST00000545540 CREMQ03060 361 aa14.6□□□□□ -0.07
USP28-214ENST00000545540 PAGE2Q7Z2X7 111 aa14.6□□□□□ -0.07
USP28-214ENST00000545540 TRIM46Q7Z4K8 759 aa14.6□□□□□ -0.07
USP28-214ENST00000545540 NPAS4Q8IUM7 802 aa14.6□□□□□ -0.07
USP28-214ENST00000545540 TTC29Q8NA56 475 aaPredicted RBP14.6□□□□□ -0.07
USP28-214ENST00000545540 OR4K1Q8NGD4 311 aa14.6□□□□□ -0.07
USP28-214ENST00000545540 ZNF461Q8TAF7 563 aa14.6□□□□□ -0.07
USP28-214ENST00000545540 HSH2DQ96JZ2 352 aa14.6□□□□□ -0.07
USP28-214ENST00000545540 ROGDIQ9GZN7 287 aa14.6□□□□□ -0.07
USP28-214ENST00000545540 SLC32A1Q9H598 525 aa14.6□□□□□ -0.07
USP28-214ENST00000545540 TMPRSS11EQ9UL52 423 aa14.6□□□□□ -0.07
USP28-214ENST00000545540 SLC6A14Q9UN76 642 aa14.6□□□□□ -0.07
USP28-214ENST00000545540 PCDHGA10Q9Y5H3 936 aa14.6□□□□□ -0.07
USP28-214ENST00000545540 ETHE1O95571 254 aa14.6□□□□□ -0.07
USP28-214ENST00000545540 CD22P20273 847 aa14.6□□□□□ -0.07
USP28-214ENST00000545540 GABRR2P28476 465 aa14.6□□□□□ -0.07
USP28-214ENST00000545540 HKDC1Q2TB90 917 aa14.6□□□□□ -0.07
USP28-214ENST00000545540 NOXRED1Q6NXP6 359 aa14.6□□□□□ -0.07
USP28-214ENST00000545540 Q6ZVU0 165 aa14.6□□□□□ -0.07
USP28-214ENST00000545540 NLGN4XQ8N0W4 816 aa14.6□□□□□ -0.07
USP28-214ENST00000545540 PIK3C3Q8NEB9 887 aa14.6□□□□□ -0.07
USP28-214ENST00000545540 MUL1Q969V5 352 aa14.6□□□□□ -0.07
USP28-214ENST00000545540 SAMD11Q96NU1 681 aa14.6□□□□□ -0.07
USP28-214ENST00000545540 NRTNQ99748 197 aa14.6□□□□□ -0.07
USP28-214ENST00000545540 NEURL2Q9BR09 285 aa14.6□□□□□ -0.07
USP28-214ENST00000545540 SH3BP4Q9P0V3 963 aa14.6□□□□□ -0.07
USP28-214ENST00000545540 PMF1-BGLAPU3KQ54 211 aa14.6□□□□□ -0.07
USP28-214ENST00000545540 SLC10A3P09131 477 aa14.59□□□□□ -0.07
USP28-214ENST00000545540 HIST1H2AGP0C0S8 130 aaPredicted RBP14.59□□□□□ -0.07
USP28-214ENST00000545540 HIST1H2ADP20671 130 aa14.59□□□□□ -0.07
USP28-214ENST00000545540 CDH3P22223 829 aa14.59□□□□□ -0.07
USP28-214ENST00000545540 HPCAL1P37235 193 aa14.59□□□□□ -0.07
USP28-214ENST00000545540 KIR3DL1P43629 444 aa14.59□□□□□ -0.07
USP28-214ENST00000545540 GZMMP51124 257 aa14.59□□□□□ -0.07
USP28-214ENST00000545540 SLC13A2Q13183 592 aa14.59□□□□□ -0.07
USP28-214ENST00000545540 TP53BP2Q13625 1128 aa14.59□□□□□ -0.07
USP28-214ENST00000545540 INAQ16352 499 aa14.59□□□□□ -0.07
USP28-214ENST00000545540 CHST9Q7L1S5 443 aa14.59□□□□□ -0.07
USP28-214ENST00000545540 CACTIN-AS1Q8N1I8 211 aa14.59□□□□□ -0.07
USP28-214ENST00000545540 RAET1EQ8TD07 263 aa14.59□□□□□ -0.07
USP28-214ENST00000545540 HIST1H2AHQ96KK5 128 aa14.59□□□□□ -0.07
USP28-214ENST00000545540 HIST1H2AJQ99878 128 aa14.59□□□□□ -0.07
USP28-214ENST00000545540 H2AFJQ9BTM1 129 aa14.59□□□□□ -0.07
USP28-214ENST00000545540 ERGIC3Q9Y282 383 aa14.59□□□□□ -0.07
USP28-214ENST00000545540 TRBV5-3A0A0A0MS03 114 aa14.59□□□□□ -0.07
USP28-214ENST00000545540 PAX3P23760 479 aa14.59□□□□□ -0.07
USP28-214ENST00000545540 IDH2P48735 452 aaKnown RBP14.59□□□□□ -0.07
USP28-214ENST00000545540 MEF2AQ02078 507 aaPredicted RBP14.59□□□□□ -0.07
USP28-214ENST00000545540 XKR6Q5GH73 641 aa14.59□□□□□ -0.07
USP28-214ENST00000545540 PRSS36Q5K4E3 855 aa14.59□□□□□ -0.07
USP28-214ENST00000545540 OR2T5Q6IEZ7 315 aa14.59□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms