RNA–Protein interactions for RNA: ENST00000544040.5

CHD4-210, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CHD4, Length 6,514 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-210ENST00000544040 SEC61A2Q9H9S3 476 aa15.11■□□□□ 0.01
CHD4-210ENST00000544040 CERS4Q9HA82 394 aa15.11■□□□□ 0.01
CHD4-210ENST00000544040 NDRG2Q9UN36 371 aaKnown RBP15.11■□□□□ 0.01
CHD4-210ENST00000544040 HIF3AQ9Y2N7 669 aa15.11■□□□□ 0.01
CHD4-210ENST00000544040 TMEM233B4DJY2 109 aa15.1■□□□□ 0.01
CHD4-210ENST00000544040 TACSTD2P09758 323 aa15.1■□□□□ 0.01
CHD4-210ENST00000544040 MMP14P50281 582 aa15.1■□□□□ 0.01
CHD4-210ENST00000544040 CLEC4CQ8WTT0 213 aa15.1■□□□□ 0.01
CHD4-210ENST00000544040 LRRC58Q96CX6 371 aa15.1■□□□□ 0.01
CHD4-210ENST00000544040 SLC38A3Q99624 504 aa15.1■□□□□ 0.01
CHD4-210ENST00000544040 CMAHPQ9Y471 501 aa15.1■□□□□ 0.01
CHD4-210ENST00000544040 SPATA31A6Q5VVP1 1343 aa15.1■□□□□ 0.01
CHD4-210ENST00000544040 LOC100130705A0A1B0GUX0 176 aa15.1■□□□□ 0.01
CHD4-210ENST00000544040 PRNPP04156 253 aa15.1■□□□□ 0.01
CHD4-210ENST00000544040 RHEBQ15382 184 aa15.1■□□□□ 0.01
CHD4-210ENST00000544040 PCED1BQ96HM7 432 aa15.1■□□□□ 0.01
CHD4-210ENST00000544040 DUS2Q9NX74 493 aaKnown RBP15.1■□□□□ 0.01
CHD4-210ENST00000544040 ZNF8P17098 575 aaPredicted RBP15.1■□□□□ 0.01
CHD4-210ENST00000544040 XRCC1P18887 633 aaPredicted RBP15.1■□□□□ 0.01
CHD4-210ENST00000544040 MECP2P51608 486 aaKnown RBP15.1■□□□□ 0.01
CHD4-210ENST00000544040 TAF1AQ15573 450 aaPredicted RBP15.1■□□□□ 0.01
CHD4-210ENST00000544040 SLC25A25Q6KCM7 469 aa15.1■□□□□ 0.01
CHD4-210ENST00000544040 PIGWQ7Z7B1 504 aa15.1■□□□□ 0.01
CHD4-210ENST00000544040 CASTOR1Q8WTX7 329 aa15.1■□□□□ 0.01
CHD4-210ENST00000544040 YARS2Q9Y2Z4 477 aaKnown RBP15.1■□□□□ 0.01
CHD4-210ENST00000544040 ZNF726A6NNF4 738 aa15.1■□□□□ 0.01
CHD4-210ENST00000544040 WASH3PC4AMC7 463 aa15.1■□□□□ 0.01
CHD4-210ENST00000544040 SLC2A7Q6PXP3 512 aa15.1■□□□□ 0.01
CHD4-210ENST00000544040 SLC15A3Q8IY34 581 aa15.1■□□□□ 0.01
CHD4-210ENST00000544040 GPC2Q8N158 579 aa15.1■□□□□ 0.01
CHD4-210ENST00000544040 MKLN1Q9UL63 735 aa15.1■□□□□ 0.01
CHD4-210ENST00000544040 CFL2Q9Y281 166 aa15.1■□□□□ 0.01
CHD4-210ENST00000544040 NWD1Q149M9 1564 aa15.1■□□□□ 0.01
CHD4-210ENST00000544040 B4GALT4O60513 344 aa15.1■□□□□ 0.01
CHD4-210ENST00000544040 SOX14O95416 240 aa15.1■□□□□ 0.01
CHD4-210ENST00000544040 SLC15A1P46059 708 aa15.1■□□□□ 0.01
CHD4-210ENST00000544040 DGKQP52824 942 aa15.1■□□□□ 0.01
CHD4-210ENST00000544040 ERVK-21P61565 698 aa15.1■□□□□ 0.01
CHD4-210ENST00000544040 MAD2L1BPQ15013 274 aaPredicted RBP15.1■□□□□ 0.01
CHD4-210ENST00000544040 OR4F3Q6IEY1 312 aa15.1■□□□□ 0.01
CHD4-210ENST00000544040 OR13C4Q8NGS5 318 aa15.1■□□□□ 0.01
CHD4-210ENST00000544040 SPPL2BQ8TCT7 592 aa15.1■□□□□ 0.01
CHD4-210ENST00000544040 TRPM4Q8TD43 1214 aa15.1■□□□□ 0.01
CHD4-210ENST00000544040 ABCD2Q9UBJ2 740 aa15.1■□□□□ 0.01
CHD4-210ENST00000544040 CAMSAP1Q5T5Y3 1602 aa15.1■□□□□ 0.01
CHD4-210ENST00000544040 SIX3O95343 332 aaPredicted RBP15.09■□□□□ 0.01
CHD4-210ENST00000544040 MAP2K5Q13163 448 aa15.09■□□□□ 0.01
CHD4-210ENST00000544040 MAB21L1Q13394 359 aa15.09■□□□□ 0.01
CHD4-210ENST00000544040 SGCBQ16585 318 aa15.09■□□□□ 0.01
CHD4-210ENST00000544040 ZBED5Q49AG3 693 aa15.09■□□□□ 0.01
CHD4-210ENST00000544040 LRRC37A5PQ49AS3 106 aa15.09■□□□□ 0.01
CHD4-210ENST00000544040 ARL14EPQ8N8R7 260 aaPredicted RBP15.09■□□□□ 0.01
CHD4-210ENST00000544040 NFKBIDQ8NI38 313 aa15.09■□□□□ 0.01
CHD4-210ENST00000544040 ADAM7Q9H2U9 754 aa15.09■□□□□ 0.01
CHD4-210ENST00000544040 SSU72Q9NP77 194 aaKnown RBP15.09■□□□□ 0.01
CHD4-210ENST00000544040 CXCR1P25024 350 aa15.09■□□□□ 0.01
CHD4-210ENST00000544040 MLLT10P55197 1068 aa15.09■□□□□ 0.01
CHD4-210ENST00000544040 LAPTM4AQ15012 233 aa15.09■□□□□ 0.01
CHD4-210ENST00000544040 OXR1Q8N573 874 aa15.09■□□□□ 0.01
CHD4-210ENST00000544040 MAFIPQ8WZ33 124 aa15.09■□□□□ 0.01
CHD4-210ENST00000544040 PKP2Q99959 881 aa15.09■□□□□ 0.01
CHD4-210ENST00000544040 UCK2Q9BZX2 261 aa15.09■□□□□ 0.01
CHD4-210ENST00000544040 AKTIPQ9H8T0 292 aa15.09■□□□□ 0.01
CHD4-210ENST00000544040 SLC7A8Q9UHI5 535 aa15.09■□□□□ 0.01
CHD4-210ENST00000544040 PCDHGA11Q9Y5H2 935 aa15.09■□□□□ 0.01
CHD4-210ENST00000544040 DSTNP60981 165 aa15.09■□□□□ 0.01
CHD4-210ENST00000544040 RHDQ02161 417 aa15.09■□□□□ 0.01
CHD4-210ENST00000544040 AMZ1Q400G9 498 aa15.09■□□□□ 0.01
CHD4-210ENST00000544040 SH3D19Q5HYK7 790 aa15.09■□□□□ 0.01
CHD4-210ENST00000544040 VTCN1Q7Z7D3 282 aa15.09■□□□□ 0.01
CHD4-210ENST00000544040 TMEM110Q86TL2 294 aa15.09■□□□□ 0.01
CHD4-210ENST00000544040 TMEM139Q8IV31 216 aa15.09■□□□□ 0.01
CHD4-210ENST00000544040 SLC22A8Q8TCC7 542 aa15.09■□□□□ 0.01
CHD4-210ENST00000544040 UPF1Q92900 1129 aaKnown RBP eCLIP15.09■□□□□ 0.012e-10■■■■■ 37.6
CHD4-210ENST00000544040 AP1S3Q96PC3 154 aa15.09■□□□□ 0.01
CHD4-210ENST00000544040 NUSAP1Q9BXS6 441 aaKnown RBP15.09■□□□□ 0.01
CHD4-210ENST00000544040 PCDHGB5Q9Y5G0 923 aa15.09■□□□□ 0.01
CHD4-210ENST00000544040 BHMG1C9JSJ3 638 aaPredicted RBP15.09■□□□□ 0.01
CHD4-210ENST00000544040 CASP7P55210 303 aa15.09■□□□□ 0.01
CHD4-210ENST00000544040 JAM2P57087 298 aa15.09■□□□□ 0.01
CHD4-210ENST00000544040 CD47Q08722 323 aa15.09■□□□□ 0.01
CHD4-210ENST00000544040 IRF2BP1Q8IU81 584 aa15.09■□□□□ 0.01
CHD4-210ENST00000544040 PDZD7Q9H5P4 517 aa15.09■□□□□ 0.01
CHD4-210ENST00000544040 C14orf166Q9Y224 244 aaKnown RBP15.09■□□□□ 0.01
CHD4-210ENST00000544040 PRORSD1PA6NEY8 169 aa15.09■□□□□ 0.01
CHD4-210ENST00000544040 PLGP00747 810 aaPredicted RBP15.09■□□□□ 0.01
CHD4-210ENST00000544040 CSF2P04141 144 aa15.09■□□□□ 0.01
CHD4-210ENST00000544040 MMP3P08254 477 aa15.09■□□□□ 0.01
CHD4-210ENST00000544040 ITGA5P08648 1049 aa15.09■□□□□ 0.01
CHD4-210ENST00000544040 ANXA8P13928 327 aa15.09■□□□□ 0.01
CHD4-210ENST00000544040 PTGER3P43115 390 aa15.09■□□□□ 0.01
CHD4-210ENST00000544040 HERVK_113P63132 956 aa15.09■□□□□ 0.01
CHD4-210ENST00000544040 ILF3Q12906 894 aaKnown RBP eCLIP15.09■□□□□ 0.012e-6■■■■□ 21.5
CHD4-210ENST00000544040 MEP1AQ16819 746 aa15.09■□□□□ 0.01
CHD4-210ENST00000544040 ALG10Q5BKT4 473 aa15.09■□□□□ 0.01
CHD4-210ENST00000544040 TMEM236Q5W0B7 351 aa15.09■□□□□ 0.01
CHD4-210ENST00000544040 VITQ6UXI7 678 aa15.09■□□□□ 0.01
CHD4-210ENST00000544040 HSDL2Q6YN16 418 aa15.09■□□□□ 0.01
CHD4-210ENST00000544040 GLB1L3Q8NCI6 653 aaPredicted RBP15.09■□□□□ 0.01
CHD4-210ENST00000544040 ERVK-6Q9BXR3 956 aa15.09■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms