RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 ZNF787Q6DD87 383 aa10.84□□□□□ -0.67
VPS28-214ENST00000531032 CNSTQ6PJW8 725 aa10.84□□□□□ -0.67
VPS28-214ENST00000531032 KCNMB4Q86W47 210 aa10.84□□□□□ -0.67
VPS28-214ENST00000531032 PARP9Q8IXQ6 854 aa10.84□□□□□ -0.67
VPS28-214ENST00000531032 OR4N4Q8N0Y3 316 aa10.84□□□□□ -0.67
VPS28-214ENST00000531032 METTL27Q8N6F8 245 aaPredicted RBP10.84□□□□□ -0.67
VPS28-214ENST00000531032 DNAJB14Q8TBM8 379 aa10.84□□□□□ -0.67
VPS28-214ENST00000531032 STT3BQ8TCJ2 826 aa10.84□□□□□ -0.67
VPS28-214ENST00000531032 MAGEC3Q8TD91 643 aa10.84□□□□□ -0.67
VPS28-214ENST00000531032 SKA2Q8WVK7 121 aaPredicted RBP10.84□□□□□ -0.67
VPS28-214ENST00000531032 FOPNLQ96NB1 174 aa10.84□□□□□ -0.67
VPS28-214ENST00000531032 BIRC8Q96P09 236 aa10.84□□□□□ -0.67
VPS28-214ENST00000531032 MESP1Q9BRJ9 268 aa10.84□□□□□ -0.67
VPS28-214ENST00000531032 CRB3Q9BUF7 120 aa10.84□□□□□ -0.67
VPS28-214ENST00000531032 KIFC1Q9BW19 673 aa10.84□□□□□ -0.67
VPS28-214ENST00000531032 EPS8L2Q9H6S3 715 aa10.84□□□□□ -0.67
VPS28-214ENST00000531032 ZNF304Q9HCX3 659 aa10.84□□□□□ -0.67
VPS28-214ENST00000531032 BFARQ9NZS9 450 aa10.84□□□□□ -0.67
VPS28-214ENST00000531032 MDC1Q14676 2089 aaKnown RBP10.84□□□□□ -0.67
VPS28-214ENST00000531032 CNTRLQ7Z7A1 2325 aa10.84□□□□□ -0.67
VPS28-214ENST00000531032 CACNA1DQ01668 2161 aa10.83□□□□□ -0.68
VPS28-214ENST00000531032 A0A0J9YVX5 310 aa10.83□□□□□ -0.68
VPS28-214ENST00000531032 HPP00738 406 aa10.83□□□□□ -0.68
VPS28-214ENST00000531032 ZGLP1P0C6A0 271 aa10.83□□□□□ -0.68
VPS28-214ENST00000531032 NPY2RP49146 381 aa10.83□□□□□ -0.68
VPS28-214ENST00000531032 EMP3P54852 163 aa10.83□□□□□ -0.68
VPS28-214ENST00000531032 ADARP55265 1226 aaKnown RBP10.83□□□□□ -0.68
VPS28-214ENST00000531032 BASP1P80723 227 aaKnown RBP10.83□□□□□ -0.68
VPS28-214ENST00000531032 CDC16Q13042 620 aa10.83□□□□□ -0.68
VPS28-214ENST00000531032 MFAP5Q13361 173 aa10.83□□□□□ -0.68
VPS28-214ENST00000531032 FASTKQ14296 549 aaKnown RBP10.83□□□□□ -0.68
VPS28-214ENST00000531032 TLR1Q15399 786 aa10.83□□□□□ -0.68
VPS28-214ENST00000531032 TYSND1Q2T9J0 566 aa10.83□□□□□ -0.68
VPS28-214ENST00000531032 MUM1Q2TAK8 710 aa10.83□□□□□ -0.68
VPS28-214ENST00000531032 PRTGQ2VWP7 1150 aa10.83□□□□□ -0.68
VPS28-214ENST00000531032 RNF187Q5TA31 235 aaPredicted RBP10.83□□□□□ -0.68
VPS28-214ENST00000531032 MEI1Q5TIA1 1274 aa10.83□□□□□ -0.68
VPS28-214ENST00000531032 ATG9BQ674R7 924 aa10.83□□□□□ -0.68
VPS28-214ENST00000531032 ISLR2Q6UXK2 745 aa10.83□□□□□ -0.68
VPS28-214ENST00000531032 C4orf22Q6V702 233 aa10.83□□□□□ -0.68
VPS28-214ENST00000531032 GRHL3Q8TE85 626 aa10.83□□□□□ -0.68
VPS28-214ENST00000531032 LPGAT1Q92604 370 aa10.83□□□□□ -0.68
VPS28-214ENST00000531032 MIEF2Q96C03 454 aa10.83□□□□□ -0.68
VPS28-214ENST00000531032 MFSD3Q96ES6 412 aa10.83□□□□□ -0.68
VPS28-214ENST00000531032 THOC3Q96J01 351 aaKnown RBP10.83□□□□□ -0.68
VPS28-214ENST00000531032 C10orf90Q96M02 699 aa10.83□□□□□ -0.68
VPS28-214ENST00000531032 LMF1Q96S06 567 aa10.83□□□□□ -0.68
VPS28-214ENST00000531032 ZFYVE21Q9BQ24 234 aa10.83□□□□□ -0.68
VPS28-214ENST00000531032 ZNF282Q9UDV7 671 aaPredicted RBP10.83□□□□□ -0.68
VPS28-214ENST00000531032 ZC3H7BQ9UGR2 993 aaKnown RBP10.83□□□□□ -0.68
VPS28-214ENST00000531032 DRG1Q9Y295 367 aaKnown RBP10.83□□□□□ -0.68
VPS28-214ENST00000531032 ZKSCAN5Q9Y2L8 839 aa10.83□□□□□ -0.68
VPS28-214ENST00000531032 A0A1W2PQ72 361 aa10.82□□□□□ -0.68
VPS28-214ENST00000531032 ARHGEF33A8MVX0 844 aa10.82□□□□□ -0.68
VPS28-214ENST00000531032 H3BMM5 538 aa10.82□□□□□ -0.68
VPS28-214ENST00000531032 MYO1CO00159 1063 aa10.82□□□□□ -0.68
VPS28-214ENST00000531032 MAP2K7O14733 419 aa10.82□□□□□ -0.68
VPS28-214ENST00000531032 PHF2O75151 1096 aa10.82□□□□□ -0.68
VPS28-214ENST00000531032 NIPSNAP2O75323 286 aa10.82□□□□□ -0.68
VPS28-214ENST00000531032 VAPBO95292 243 aa10.82□□□□□ -0.68
VPS28-214ENST00000531032 ESR1P03372 595 aa10.82□□□□□ -0.68
VPS28-214ENST00000531032 CCDC175P0C221 793 aa10.82□□□□□ -0.68
VPS28-214ENST00000531032 EDN3P14138 238 aa10.82□□□□□ -0.68
VPS28-214ENST00000531032 ACPPP15309 386 aa10.82□□□□□ -0.68
VPS28-214ENST00000531032 CMPK1P30085 196 aa10.82□□□□□ -0.68
VPS28-214ENST00000531032 YBX1P67809 324 aaKnown RBP10.82□□□□□ -0.68
VPS28-214ENST00000531032 CDK16Q00536 496 aa10.82□□□□□ -0.68
VPS28-214ENST00000531032 OCA2Q04671 838 aa10.82□□□□□ -0.68
VPS28-214ENST00000531032 RPS6KA1Q15418 735 aa10.82□□□□□ -0.68
VPS28-214ENST00000531032 EEF1AKMT2Q5JPI9 291 aaKnown RBP10.82□□□□□ -0.68
VPS28-214ENST00000531032 MRNIPQ6NTE8 343 aa10.82□□□□□ -0.68
VPS28-214ENST00000531032 RPUSD3Q6P087 351 aaKnown RBP10.82□□□□□ -0.68
VPS28-214ENST00000531032 FBXO42Q6P3S6 717 aa10.82□□□□□ -0.68
VPS28-214ENST00000531032 LRRC8BQ6P9F7 803 aa10.82□□□□□ -0.68
VPS28-214ENST00000531032 OR9A1PQ8NGU1 263 aa10.82□□□□□ -0.68
VPS28-214ENST00000531032 FAR1Q8WVX9 515 aa10.82□□□□□ -0.68
VPS28-214ENST00000531032 MVB12AQ96EY5 273 aa10.82□□□□□ -0.68
VPS28-214ENST00000531032 CNDP1Q96KN2 507 aa10.82□□□□□ -0.68
VPS28-214ENST00000531032 TCF12Q99081 682 aa10.82□□□□□ -0.68
VPS28-214ENST00000531032 SLX1AQ9BQ83 275 aa10.82□□□□□ -0.68
VPS28-214ENST00000531032 TRIM56Q9BRZ2 755 aaKnown RBP10.82□□□□□ -0.68
VPS28-214ENST00000531032 DPH7Q9BTV6 452 aa10.82□□□□□ -0.68
VPS28-214ENST00000531032 SYBUQ9NX95 663 aa10.82□□□□□ -0.68
VPS28-214ENST00000531032 C3orf18Q9UK00 162 aa10.82□□□□□ -0.68
VPS28-214ENST00000531032 CROCCQ5TZA2 2017 aa10.82□□□□□ -0.68
VPS28-214ENST00000531032 IGKV1-8A0A0C4DH67 115 aa10.81□□□□□ -0.68
VPS28-214ENST00000531032 H0YGG7 62 aa10.81□□□□□ -0.68
VPS28-214ENST00000531032 PSIP1O75475 530 aaKnown RBP10.81□□□□□ -0.68
VPS28-214ENST00000531032 USP1O94782 785 aa10.81□□□□□ -0.68
VPS28-214ENST00000531032 KLHL18O94889 574 aa10.81□□□□□ -0.68
VPS28-214ENST00000531032 EIF2S1P05198 315 aaKnown RBP10.81□□□□□ -0.68
VPS28-214ENST00000531032 ERVK-10P10266 1014 aa10.81□□□□□ -0.68
VPS28-214ENST00000531032 COX6A1P12074 109 aa10.81□□□□□ -0.68
VPS28-214ENST00000531032 TPSB2P20231 275 aa10.81□□□□□ -0.68
VPS28-214ENST00000531032 OGNP20774 298 aaKnown RBP10.81□□□□□ -0.68
VPS28-214ENST00000531032 FBLP22087 321 aaKnown RBP10.81□□□□□ -0.68
VPS28-214ENST00000531032 FDXRP22570 491 aa10.81□□□□□ -0.68
VPS28-214ENST00000531032 MGAT1P26572 445 aa10.81□□□□□ -0.68
VPS28-214ENST00000531032 FMO4P31512 558 aa10.81□□□□□ -0.68
VPS28-214ENST00000531032 SOX11P35716 441 aa10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms