RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 PDYNP01213 254 aa20.31■□□□□ 0.84
VPS28-208ENST00000527797 XRCC1P18887 633 aaPredicted RBP20.31■□□□□ 0.84
VPS28-208ENST00000527797 VARSP26640 1264 aaKnown RBP20.31■□□□□ 0.84
VPS28-208ENST00000527797 DHPSP49366 369 aaPredicted RBP20.31■□□□□ 0.84
VPS28-208ENST00000527797 ZNF33BQ06732 778 aa20.31■□□□□ 0.84
VPS28-208ENST00000527797 KIR2DS5Q14953 304 aa20.31■□□□□ 0.84
VPS28-208ENST00000527797 CATSPEREQ5SY80 951 aa20.31■□□□□ 0.84
VPS28-208ENST00000527797 LYSMD4Q5XG99 296 aa20.31■□□□□ 0.84
VPS28-208ENST00000527797 FRG2Q64ET8 278 aa20.31■□□□□ 0.84
VPS28-208ENST00000527797 C17orf64Q86WR6 236 aa20.31■□□□□ 0.84
VPS28-208ENST00000527797 TRIM48Q8IWZ4 208 aa20.31■□□□□ 0.84
VPS28-208ENST00000527797 FRG2BQ96QU4 278 aa20.31■□□□□ 0.84
VPS28-208ENST00000527797 TAGLN3Q9UI15 199 aa20.31■□□□□ 0.84
VPS28-208ENST00000527797 SH2B3Q9UQQ2 575 aa20.31■□□□□ 0.84
VPS28-208ENST00000527797 PCDHGA11Q9Y5H2 935 aa20.31■□□□□ 0.84
VPS28-208ENST00000527797 A0A1W2PPV9 198 aa20.3■□□□□ 0.84
VPS28-208ENST00000527797 VIPP01282 170 aa20.3■□□□□ 0.84
VPS28-208ENST00000527797 ESRRAP11474 423 aaPredicted RBP20.3■□□□□ 0.84
VPS28-208ENST00000527797 CALB2P22676 271 aa20.3■□□□□ 0.84
VPS28-208ENST00000527797 SHMT2P34897 504 aa20.3■□□□□ 0.84
VPS28-208ENST00000527797 SCTRP47872 440 aa20.3■□□□□ 0.84
VPS28-208ENST00000527797 ATP4BP51164 291 aa20.3■□□□□ 0.84
VPS28-208ENST00000527797 LAPTM5Q13571 262 aa20.3■□□□□ 0.84
VPS28-208ENST00000527797 SQLEQ14534 574 aa20.3■□□□□ 0.84
VPS28-208ENST00000527797 NR6A1Q15406 480 aa20.3■□□□□ 0.84
VPS28-208ENST00000527797 TEAD4Q15561 434 aa20.3■□□□□ 0.84
VPS28-208ENST00000527797 HIST2H2ACQ16777 129 aaPredicted RBP20.3■□□□□ 0.84
VPS28-208ENST00000527797 IMPG1Q17R60 797 aa20.3■□□□□ 0.84
VPS28-208ENST00000527797 PAGE2BQ5JRK9 111 aa20.3■□□□□ 0.84
VPS28-208ENST00000527797 HIST2H2AA3Q6FI13 130 aa20.3■□□□□ 0.84
VPS28-208ENST00000527797 SFRP1Q8N474 314 aa20.3■□□□□ 0.84
VPS28-208ENST00000527797 DTWD2Q8NBA8 298 aa20.3■□□□□ 0.84
VPS28-208ENST00000527797 ZFPM2Q8WW38 1151 aa20.3■□□□□ 0.84
VPS28-208ENST00000527797 LCN9Q8WX39 176 aa20.3■□□□□ 0.84
VPS28-208ENST00000527797 PPP3R2Q96LZ3 170 aa20.3■□□□□ 0.84
VPS28-208ENST00000527797 ACAT2Q9BWD1 397 aa20.3■□□□□ 0.84
VPS28-208ENST00000527797 SPASTQ9UBP0 616 aa20.3■□□□□ 0.84
VPS28-208ENST00000527797 CCL27Q9Y4X3 112 aa20.3■□□□□ 0.84
VPS28-208ENST00000527797 TRIOO75962 3097 aa20.3■□□□□ 0.84
VPS28-208ENST00000527797 SERTM1A2A2V5 107 aa20.29■□□□□ 0.84
VPS28-208ENST00000527797 HNRNPCL1O60812 293 aaKnown RBP20.29■□□□□ 0.84
VPS28-208ENST00000527797 NEK2P51955 445 aa20.29■□□□□ 0.84
VPS28-208ENST00000527797 STX1BP61266 288 aa20.29■□□□□ 0.84
VPS28-208ENST00000527797 IRX1P78414 480 aaPredicted RBP20.29■□□□□ 0.84
VPS28-208ENST00000527797 SRSF5Q13243 272 aaKnown RBP20.29■□□□□ 0.84
VPS28-208ENST00000527797 C6orf136Q5SQH8 315 aa20.29■□□□□ 0.84
VPS28-208ENST00000527797 PMS2CLQ68D20 193 aa20.29■□□□□ 0.84
VPS28-208ENST00000527797 MED27Q6P2C8 311 aa20.29■□□□□ 0.84
VPS28-208ENST00000527797 AMIGO1Q86WK6 493 aa20.29■□□□□ 0.84
VPS28-208ENST00000527797 GKN2Q86XP6 184 aa20.29■□□□□ 0.84
VPS28-208ENST00000527797 FAM46DQ8NEK8 389 aa20.29■□□□□ 0.84
VPS28-208ENST00000527797 REPS1Q96D71 796 aa20.29■□□□□ 0.84
VPS28-208ENST00000527797 SLC40A1Q9NP59 571 aa20.29■□□□□ 0.84
VPS28-208ENST00000527797 POT1Q9NUX5 634 aa20.29■□□□□ 0.84
VPS28-208ENST00000527797 FBXO4Q9UKT5 387 aa20.29■□□□□ 0.84
VPS28-208ENST00000527797 PCDHB11Q9Y5F2 797 aa20.29■□□□□ 0.84
VPS28-208ENST00000527797 LRP4O75096 1905 aa20.29■□□□□ 0.84
VPS28-208ENST00000527797 COL6A3P12111 3177 aa20.29■□□□□ 0.84
VPS28-208ENST00000527797 LSM1O15116 133 aaKnown RBP20.28■□□□□ 0.84
VPS28-208ENST00000527797 ALDOCP09972 364 aaKnown RBP20.28■□□□□ 0.84
VPS28-208ENST00000527797 CDH1P12830 882 aa20.28■□□□□ 0.84
VPS28-208ENST00000527797 PIK3R1P27986 724 aa20.28■□□□□ 0.84
VPS28-208ENST00000527797 PRDX6P30041 224 aa20.28■□□□□ 0.84
VPS28-208ENST00000527797 RASSF2P50749 326 aa20.28■□□□□ 0.84
VPS28-208ENST00000527797 HNRNPKP61978 463 aaKnown RBP eCLIP20.28■□□□□ 0.84
VPS28-208ENST00000527797 ERVK-8P63133 956 aa20.28■□□□□ 0.84
VPS28-208ENST00000527797 SLBPQ14493 270 aaKnown RBP eCLIP20.28■□□□□ 0.84
VPS28-208ENST00000527797 NAA25Q14CX7 972 aa20.28■□□□□ 0.84
VPS28-208ENST00000527797 AP5B1Q2VPB7 878 aa20.28■□□□□ 0.84
VPS28-208ENST00000527797 FNDC5Q8NAU1 212 aa20.28■□□□□ 0.84
VPS28-208ENST00000527797 OR4E2Q8NGC2 313 aa20.28■□□□□ 0.84
VPS28-208ENST00000527797 WDR20Q8TBZ3 569 aa20.28■□□□□ 0.84
VPS28-208ENST00000527797 LMX1AQ8TE12 382 aa20.28■□□□□ 0.84
VPS28-208ENST00000527797 ZDHHC1Q8WTX9 485 aa20.28■□□□□ 0.84
VPS28-208ENST00000527797 CMTM5Q96DZ9 223 aa20.28■□□□□ 0.84
VPS28-208ENST00000527797 PELI2Q9HAT8 420 aa20.28■□□□□ 0.84
VPS28-208ENST00000527797 OR6C2Q9NZP2 312 aa20.28■□□□□ 0.84
VPS28-208ENST00000527797 CPNE7Q9UBL6 633 aa20.28■□□□□ 0.84
VPS28-208ENST00000527797 DOLKQ9UPQ8 538 aa20.28■□□□□ 0.84
VPS28-208ENST00000527797 ANKRD65E5RJM6 399 aa20.27■□□□□ 0.84
VPS28-208ENST00000527797 GNSP15586 552 aa20.27■□□□□ 0.84
VPS28-208ENST00000527797 NCALDP61601 193 aa20.27■□□□□ 0.84
VPS28-208ENST00000527797 HMGCS1Q01581 520 aa20.27■□□□□ 0.84
VPS28-208ENST00000527797 GSTA3Q16772 222 aa20.27■□□□□ 0.84
VPS28-208ENST00000527797 SMU1Q2TAY7 513 aa20.27■□□□□ 0.84
VPS28-208ENST00000527797 SLC9B2Q86UD5 537 aa20.27■□□□□ 0.84
VPS28-208ENST00000527797 NAGSQ8N159 534 aa20.27■□□□□ 0.84
VPS28-208ENST00000527797 JPH3Q8WXH2 748 aaPredicted RBP20.27■□□□□ 0.84
VPS28-208ENST00000527797 UBE2E3Q969T4 207 aa20.27■□□□□ 0.84
VPS28-208ENST00000527797 ACPTQ9BZG2 426 aa20.27■□□□□ 0.84
VPS28-208ENST00000527797 SRMSQ9H3Y6 488 aa20.27■□□□□ 0.84
VPS28-208ENST00000527797 GEMIN8Q9NWZ8 242 aaKnown RBP20.27■□□□□ 0.84
VPS28-208ENST00000527797 TECTAO75443 2155 aa20.27■□□□□ 0.84
VPS28-208ENST00000527797 A0A1B0GTW7 788 aa20.27■□□□□ 0.83
VPS28-208ENST00000527797 PCNAP12004 261 aa20.27■□□□□ 0.83
VPS28-208ENST00000527797 IDO1P14902 403 aa20.27■□□□□ 0.83
VPS28-208ENST00000527797 PSMB5P28074 263 aa20.27■□□□□ 0.83
VPS28-208ENST00000527797 UBE2IP63279 158 aaKnown RBP20.27■□□□□ 0.83
VPS28-208ENST00000527797 EMX2Q04743 252 aa20.27■□□□□ 0.83
VPS28-208ENST00000527797 CSTF3Q12996 717 aaKnown RBP20.27■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms