RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 HOXC9P31274 260 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 GKP32189 559 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 CCR1P32246 355 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 SLC8A1P32418 973 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 SHMT1P34896 483 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 RYKP34925 604 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 BMI1P35226 326 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 SERPINB6P35237 376 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 NF2P35240 595 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 IDUAP35475 653 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 SLC16A2P36021 539 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 CHI3L1P36222 383 aaPredicted RBP0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 LONP1P36776 959 aaKnown RBP0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 HSD17B3P37058 310 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 HSD17B2P37059 387 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 PLA2G5P39877 138 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 CAPGP40121 348 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 PTGER3P43115 390 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 MAGEA1P43355 309 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 PTPN9P43378 593 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 NSFP46459 744 aaKnown RBP0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 GPR12P47775 334 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 CDX1P47902 265 aaPredicted RBP0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 SLC9A3P48764 834 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 FMO5P49326 533 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 RGS7P49802 495 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 GMPSP49915 693 aaPredicted RBP0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 AGTR2P50052 363 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 ZNF84P51523 738 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 CLCN3P51790 818 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 GPR143P51810 404 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 CNN1P51911 297 aaKnown RBP0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 JAK3P52333 1124 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 HNRNPFP52597 415 aaKnown RBP0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 METAP1P53582 386 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 COPB1P53618 953 aaKnown RBP0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 RAD23BP54727 409 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 ARSFP54793 590 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 PRRX1P54821 245 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 AIF1P55008 147 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 MFAP3P55082 362 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 CDH13P55290 713 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 HUNKP57058 714 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 MAP3K7CLP57077 242 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 PTENP60484 403 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 SRP54P61011 504 aaKnown RBP0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 ERVK11-1P61568 191 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 UBE2HP62256 183 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 RPL23AP62750 156 aaKnown RBP0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 POLR2LP62875 67 aaKnown RBP0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 GPC5P78333 572 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 RPP38P78345 283 aaKnown RBP0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 PHEXP78562 749 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 DLK1P80370 383 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 ABATP80404 500 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 ADORA2A-AS1P86434 159 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 CCZ1BP86790 482 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 CCZ1P86791 482 aaPredicted RBP0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 SHC2P98077 582 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 CDK3Q00526 305 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 E2F1Q01094 437 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 GALK2Q01415 458 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 GCNT1Q02742 428 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 CFHR3Q02985 330 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 MECOMQ03112 1051 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 HSF2Q03933 536 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 CSTF1Q05048 431 aaKnown RBP0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 GAD2Q05329 585 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 MZT1Q08AG7 82 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 NCBP1Q09161 790 aaKnown RBP0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 CCDC173Q0VFZ6 552 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 SREBF2Q12772 1141 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 PPP1R8Q12972 351 aaKnown RBP0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 TRDNQ13061 729 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 GAGE2BQ13066 116 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 DNAJC3Q13217 504 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 ITGADQ13349 1161 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 MAB21L1Q13394 359 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 SNTB2Q13425 540 aaKnown RBP0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 HNRNPDQ14103 355 aaKnown RBP0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 NEDD9Q14511 834 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 PDIA5Q14554 519 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 PTGR1Q14914 329 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 DAZAP2Q15038 168 aaPredicted RBP0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 KARSQ15046 597 aaKnown RBP0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 PDK3Q15120 406 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 KRT31Q15323 416 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 DLG2Q15700 870 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 CEBPEQ15744 281 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 CARTPTQ16568 116 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 PDK4Q16654 411 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 TATDN3Q17R31 274 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 PNLIPRP3Q17RR3 467 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 LY6KQ17RY6 165 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 MTHFSDQ2M296 383 aaKnown RBP0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 SOWAHAQ2M3V2 549 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 KLHL40Q2TBA0 621 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 COL28A1Q2UY09 1125 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 ANKRD55Q3KP44 614 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 LRIT3Q3SXY7 679 aa0.56□□□□□ -2.32
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms