RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 SH2B3Q9UQQ2 575 aa28.53■■■□□ 2.16
LIMCH1-211ENST00000509638 SLC22A14Q9Y267 594 aa28.53■■■□□ 2.16
LIMCH1-211ENST00000509638 KLHL20Q9Y2M5 609 aa28.53■■■□□ 2.16
LIMCH1-211ENST00000509638 PLLPQ9Y342 182 aa28.53■■■□□ 2.16
LIMCH1-211ENST00000509638 SLC9B1P1A6NJY1 282 aa28.52■■■□□ 2.16
LIMCH1-211ENST00000509638 A8MT66 165 aa28.52■■■□□ 2.16
LIMCH1-211ENST00000509638 STK16O75716 305 aa28.52■■■□□ 2.16
LIMCH1-211ENST00000509638 CCNDBP1O95273 360 aa28.52■■■□□ 2.16
LIMCH1-211ENST00000509638 TAC1P20366 129 aa28.52■■■□□ 2.16
LIMCH1-211ENST00000509638 CMPK1P30085 196 aa28.52■■■□□ 2.16
LIMCH1-211ENST00000509638 FOXC1Q12948 553 aa28.52■■■□□ 2.16
LIMCH1-211ENST00000509638 TARDBPQ13148 414 aaKnown RBP eCLIP28.52■■■□□ 2.16
LIMCH1-211ENST00000509638 LCTLQ6UWM7 567 aa28.52■■■□□ 2.16
LIMCH1-211ENST00000509638 TMPRSS7Q7RTY8 843 aa28.52■■■□□ 2.16
LIMCH1-211ENST00000509638 THOC6Q86W42 341 aaKnown RBP28.52■■■□□ 2.16
LIMCH1-211ENST00000509638 MARCH9Q86YJ5 346 aa28.52■■■□□ 2.16
LIMCH1-211ENST00000509638 KLHDC8AQ8IYD2 350 aa28.52■■■□□ 2.16
LIMCH1-211ENST00000509638 CCDC63Q8NA47 563 aa28.52■■■□□ 2.16
LIMCH1-211ENST00000509638 TLCD1Q96CP7 247 aa28.52■■■□□ 2.16
LIMCH1-211ENST00000509638 TRAPPC9Q96Q05 1148 aa28.52■■■□□ 2.16
LIMCH1-211ENST00000509638 SH3GL2Q99962 352 aa28.52■■■□□ 2.16
LIMCH1-211ENST00000509638 STRADBQ9C0K7 418 aa28.52■■■□□ 2.16
LIMCH1-211ENST00000509638 SLC6A20Q9NP91 592 aa28.52■■■□□ 2.16
LIMCH1-211ENST00000509638 MRPS30Q9NP92 439 aaKnown RBP28.52■■■□□ 2.16
LIMCH1-211ENST00000509638 SOHLH2Q9NX45 425 aa28.52■■■□□ 2.16
LIMCH1-211ENST00000509638 HYAL3O43820 417 aaPredicted RBP28.51■■■□□ 2.15
LIMCH1-211ENST00000509638 FKBP9O95302 570 aa28.51■■■□□ 2.15
LIMCH1-211ENST00000509638 ZBTB11O95625 1053 aaPredicted RBP28.51■■■□□ 2.15
LIMCH1-211ENST00000509638 PRDX1Q06830 199 aaKnown RBP28.51■■■□□ 2.15
LIMCH1-211ENST00000509638 GOLGA6L1Q8N7Z2 621 aa28.51■■■□□ 2.15
LIMCH1-211ENST00000509638 C19orf47Q8N9M1 422 aaKnown RBP28.51■■■□□ 2.15
LIMCH1-211ENST00000509638 TCP10LQ8TDR4 215 aa28.51■■■□□ 2.15
LIMCH1-211ENST00000509638 ARL8AQ96BM9 186 aa28.51■■■□□ 2.15
LIMCH1-211ENST00000509638 FAM111AQ96PZ2 611 aa28.51■■■□□ 2.15
LIMCH1-211ENST00000509638 HAUS8Q9BT25 410 aa28.51■■■□□ 2.15
LIMCH1-211ENST00000509638 CD244Q9BZW8 370 aa28.51■■■□□ 2.15
LIMCH1-211ENST00000509638 SSU72Q9NP77 194 aaKnown RBP28.51■■■□□ 2.15
LIMCH1-211ENST00000509638 SLC17A7Q9P2U7 560 aa28.51■■■□□ 2.15
LIMCH1-211ENST00000509638 TMX2-CTNND1H3BSU7 103 aa28.5■■■□□ 2.15
LIMCH1-211ENST00000509638 HGSO14964 777 aaPredicted RBP28.5■■■□□ 2.15
LIMCH1-211ENST00000509638 CCNT2O60583 730 aaKnown RBP28.5■■■□□ 2.15
LIMCH1-211ENST00000509638 MAGOHP61326 146 aaKnown RBP28.5■■■□□ 2.15
LIMCH1-211ENST00000509638 NFKB2Q00653 900 aa28.5■■■□□ 2.15
LIMCH1-211ENST00000509638 AGBL2Q5U5Z8 902 aa28.5■■■□□ 2.15
LIMCH1-211ENST00000509638 LRRC70Q7Z2Q7 622 aa28.5■■■□□ 2.15
LIMCH1-211ENST00000509638 CACTIN-AS1Q8N1I8 211 aa28.5■■■□□ 2.15
LIMCH1-211ENST00000509638 KLHL6Q8WZ60 621 aa28.5■■■□□ 2.15
LIMCH1-211ENST00000509638 LIN37Q96GY3 246 aaPredicted RBP28.5■■■□□ 2.15
LIMCH1-211ENST00000509638 ACBD3Q9H3P7 528 aa28.5■■■□□ 2.15
LIMCH1-211ENST00000509638 CUEDC1Q9NWM3 386 aaPredicted RBP28.5■■■□□ 2.15
LIMCH1-211ENST00000509638 IGKV1-8A0A0C4DH67 115 aa28.5■■■□□ 2.15
LIMCH1-211ENST00000509638 LRRC14BA6NHZ5 514 aa28.5■■■□□ 2.15
LIMCH1-211ENST00000509638 SIX3O95343 332 aaPredicted RBP28.5■■■□□ 2.15
LIMCH1-211ENST00000509638 NPPBP16860 134 aa28.5■■■□□ 2.15
LIMCH1-211ENST00000509638 GRIA3P42263 894 aa28.5■■■□□ 2.15
LIMCH1-211ENST00000509638 ABATP80404 500 aa28.5■■■□□ 2.15
LIMCH1-211ENST00000509638 C17orf64Q86WR6 236 aa28.5■■■□□ 2.15
LIMCH1-211ENST00000509638 KMT5CQ86Y97 462 aa28.5■■■□□ 2.15
LIMCH1-211ENST00000509638 ARMC2Q8NEN0 867 aa28.5■■■□□ 2.15
LIMCH1-211ENST00000509638 SLC41A2Q96JW4 573 aa28.5■■■□□ 2.15
LIMCH1-211ENST00000509638 DPH7Q9BTV6 452 aa28.5■■■□□ 2.15
LIMCH1-211ENST00000509638 DNAJC11Q9NVH1 559 aa28.5■■■□□ 2.15
LIMCH1-211ENST00000509638 OPTCQ9UBM4 332 aa28.5■■■□□ 2.15
LIMCH1-211ENST00000509638 G3V2L1 256 aa28.49■■■□□ 2.15
LIMCH1-211ENST00000509638 STX16-NPEPL1H3BU86 382 aa28.49■■■□□ 2.15
LIMCH1-211ENST00000509638 STX16O14662 325 aa28.49■■■□□ 2.15
LIMCH1-211ENST00000509638 DLX3O60479 287 aa28.49■■■□□ 2.15
LIMCH1-211ENST00000509638 PRAMEF10O60809 474 aa28.49■■■□□ 2.15
LIMCH1-211ENST00000509638 MYL2P10916 166 aa28.49■■■□□ 2.15
LIMCH1-211ENST00000509638 NELFEP18615 380 aaKnown RBP28.49■■■□□ 2.15
LIMCH1-211ENST00000509638 ATP5F1P24539 256 aaPredicted RBP28.49■■■□□ 2.15
LIMCH1-211ENST00000509638 CSTF2P33240 577 aaKnown RBP eCLIP28.49■■■□□ 2.15
LIMCH1-211ENST00000509638 ARL4DP49703 201 aa28.49■■■□□ 2.15
LIMCH1-211ENST00000509638 HSD11B2P80365 405 aa28.49■■■□□ 2.15
LIMCH1-211ENST00000509638 ZIC1Q15915 447 aa28.49■■■□□ 2.15
LIMCH1-211ENST00000509638 ZYG11AQ6WRX3 759 aa28.49■■■□□ 2.15
LIMCH1-211ENST00000509638 AGBL5Q8NDL9 886 aa28.49■■■□□ 2.15
LIMCH1-211ENST00000509638 RDH11Q8TC12 318 aa28.49■■■□□ 2.15
LIMCH1-211ENST00000509638 GRAMD1AQ96CP6 724 aa28.49■■■□□ 2.15
LIMCH1-211ENST00000509638 DYRK1BQ9Y463 629 aa28.49■■■□□ 2.15
LIMCH1-211ENST00000509638 NRP2O60462 931 aa28.48■■■□□ 2.15
LIMCH1-211ENST00000509638 EEF1DP29692 281 aaKnown RBP28.48■■■□□ 2.15
LIMCH1-211ENST00000509638 MLLT3P42568 568 aaPredicted RBP28.48■■■□□ 2.15
LIMCH1-211ENST00000509638 CDC16Q13042 620 aa28.48■■■□□ 2.15
LIMCH1-211ENST00000509638 KCNAB1Q14722 419 aa28.48■■■□□ 2.15
LIMCH1-211ENST00000509638 PDK4Q16654 411 aa28.48■■■□□ 2.15
LIMCH1-211ENST00000509638 TTMPQ5BVD1 217 aa28.48■■■□□ 2.15
LIMCH1-211ENST00000509638 SNX31Q8N9S9 440 aa28.48■■■□□ 2.15
LIMCH1-211ENST00000509638 NEIL2Q969S2 332 aa28.48■■■□□ 2.15
LIMCH1-211ENST00000509638 ATP6V1G3Q96LB4 118 aa28.48■■■□□ 2.15
LIMCH1-211ENST00000509638 CMKLR1Q99788 373 aa28.48■■■□□ 2.15
LIMCH1-211ENST00000509638 MID2Q9UJV3 735 aa28.48■■■□□ 2.15
LIMCH1-211ENST00000509638 BTRCQ9Y297 605 aa28.48■■■□□ 2.15
LIMCH1-211ENST00000509638 TNPO3Q9Y5L0 923 aaKnown RBP28.48■■■□□ 2.15
LIMCH1-211ENST00000509638 CEP295Q9C0D2 2601 aa28.48■■■□□ 2.15
LIMCH1-211ENST00000509638 K7EPI3 171 aa28.47■■■□□ 2.15
LIMCH1-211ENST00000509638 CDH1P12830 882 aa28.47■■■□□ 2.15
LIMCH1-211ENST00000509638 NAA25Q14CX7 972 aa28.47■■■□□ 2.15
LIMCH1-211ENST00000509638 PCBP2Q15366 365 aaKnown RBP eCLIP28.47■■■□□ 2.15
LIMCH1-211ENST00000509638 FAM129CQ86XR2 697 aa28.47■■■□□ 2.15
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms