RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 SKA2Q8WVK7 121 aaPredicted RBP11.83□□□□□ -0.52
CPSF3-204ENST00000489403 MIEF2Q96C03 454 aa11.83□□□□□ -0.52
CPSF3-204ENST00000489403 C8orf44Q96CB5 159 aa11.83□□□□□ -0.52
CPSF3-204ENST00000489403 VPS50Q96JG6 964 aa11.83□□□□□ -0.52
CPSF3-204ENST00000489403 ZNF160Q9HCG1 818 aa11.83□□□□□ -0.52
CPSF3-204ENST00000489403 SPATA7Q9P0W8 599 aa11.83□□□□□ -0.52
CPSF3-204ENST00000489403 STOX2Q9P2F5 926 aaPredicted RBP11.83□□□□□ -0.52
CPSF3-204ENST00000489403 ZNF282Q9UDV7 671 aaPredicted RBP11.83□□□□□ -0.52
CPSF3-204ENST00000489403 OSGIN2Q9Y236 505 aa11.83□□□□□ -0.52
CPSF3-204ENST00000489403 NOTCH2Q04721 2471 aa11.83□□□□□ -0.52
CPSF3-204ENST00000489403 IGLV3-12A0A075B6K2 115 aa11.82□□□□□ -0.52
CPSF3-204ENST00000489403 OR2A25A4D2G3 310 aa11.82□□□□□ -0.52
CPSF3-204ENST00000489403 ENO4A6NNW6 628 aa11.82□□□□□ -0.52
CPSF3-204ENST00000489403 MAP2K7O14733 419 aa11.82□□□□□ -0.52
CPSF3-204ENST00000489403 KPNA5O15131 536 aa11.82□□□□□ -0.52
CPSF3-204ENST00000489403 NDUFS3O75489 264 aa11.82□□□□□ -0.52
CPSF3-204ENST00000489403 EIF2S1P05198 315 aaKnown RBP11.82□□□□□ -0.52
CPSF3-204ENST00000489403 ERGP11308 486 aa11.82□□□□□ -0.52
CPSF3-204ENST00000489403 ACPPP15309 386 aa11.82□□□□□ -0.52
CPSF3-204ENST00000489403 ARNTP27540 789 aa11.82□□□□□ -0.52
CPSF3-204ENST00000489403 RPL22P35268 128 aaKnown RBP11.82□□□□□ -0.52
CPSF3-204ENST00000489403 CCNFP41002 786 aa11.82□□□□□ -0.52
CPSF3-204ENST00000489403 EIF3BP55884 814 aaKnown RBP11.82□□□□□ -0.52
CPSF3-204ENST00000489403 OCA2Q04671 838 aa11.82□□□□□ -0.52
CPSF3-204ENST00000489403 GBX1Q14549 363 aa11.82□□□□□ -0.52
CPSF3-204ENST00000489403 PRTGQ2VWP7 1150 aa11.82□□□□□ -0.52
CPSF3-204ENST00000489403 VWA2Q5GFL6 755 aa11.82□□□□□ -0.52
CPSF3-204ENST00000489403 ATG9BQ674R7 924 aa11.82□□□□□ -0.52
CPSF3-204ENST00000489403 RPUSD3Q6P087 351 aaKnown RBP11.82□□□□□ -0.52
CPSF3-204ENST00000489403 FAM180AQ6UWF9 173 aa11.82□□□□□ -0.52
CPSF3-204ENST00000489403 LRRC6Q86X45 466 aa11.82□□□□□ -0.52
CPSF3-204ENST00000489403 TXLNBQ8N3L3 684 aa11.82□□□□□ -0.52
CPSF3-204ENST00000489403 MPP5Q8N3R9 675 aa11.82□□□□□ -0.52
CPSF3-204ENST00000489403 CCDC89Q8N998 374 aa11.82□□□□□ -0.52
CPSF3-204ENST00000489403 FOPNLQ96NB1 174 aa11.82□□□□□ -0.52
CPSF3-204ENST00000489403 BIRC8Q96P09 236 aa11.82□□□□□ -0.52
CPSF3-204ENST00000489403 LMF1Q96S06 567 aa11.82□□□□□ -0.52
CPSF3-204ENST00000489403 ZFYVE21Q9BQ24 234 aa11.82□□□□□ -0.52
CPSF3-204ENST00000489403 SLX1AQ9BQ83 275 aa11.82□□□□□ -0.52
CPSF3-204ENST00000489403 TRIM56Q9BRZ2 755 aaKnown RBP11.82□□□□□ -0.52
CPSF3-204ENST00000489403 ACAT2Q9BWD1 397 aa11.82□□□□□ -0.52
CPSF3-204ENST00000489403 RBSNQ9H1K0 784 aa11.82□□□□□ -0.52
CPSF3-204ENST00000489403 SYNPO2LQ9H987 977 aa11.82□□□□□ -0.52
CPSF3-204ENST00000489403 EIF2B3Q9NR50 452 aaKnown RBP11.82□□□□□ -0.52
CPSF3-204ENST00000489403 TSR3Q9UJK0 312 aaKnown RBP11.82□□□□□ -0.52
CPSF3-204ENST00000489403 C3orf18Q9UK00 162 aa11.82□□□□□ -0.52
CPSF3-204ENST00000489403 MRFAP1Q9Y605 127 aa11.82□□□□□ -0.52
CPSF3-204ENST00000489403 POLEQ07864 2286 aa11.81□□□□□ -0.52
CPSF3-204ENST00000489403 ZGRF1Q86YA3 2104 aa11.81□□□□□ -0.52
CPSF3-204ENST00000489403 NSG1A0A0A6YYJ2 146 aa11.81□□□□□ -0.52
CPSF3-204ENST00000489403 ZG16O60844 167 aa11.81□□□□□ -0.52
CPSF3-204ENST00000489403 MATN4O95460 622 aa11.81□□□□□ -0.52
CPSF3-204ENST00000489403 ERVK-10P10266 1014 aa11.81□□□□□ -0.52
CPSF3-204ENST00000489403 COX6A1P12074 109 aa11.81□□□□□ -0.52
CPSF3-204ENST00000489403 FBLP22087 321 aaKnown RBP11.81□□□□□ -0.52
CPSF3-204ENST00000489403 CMPK1P30085 196 aa11.81□□□□□ -0.52
CPSF3-204ENST00000489403 SOX11P35716 441 aa11.81□□□□□ -0.52
CPSF3-204ENST00000489403 PER3P56645 1201 aa11.81□□□□□ -0.52
CPSF3-204ENST00000489403 BASP1P80723 227 aaKnown RBP11.81□□□□□ -0.52
CPSF3-204ENST00000489403 SIX1Q15475 284 aaPredicted RBP11.81□□□□□ -0.52
CPSF3-204ENST00000489403 ZRSR2Q15696 482 aaKnown RBP11.81□□□□□ -0.52
CPSF3-204ENST00000489403 MUM1Q2TAK8 710 aa11.81□□□□□ -0.52
CPSF3-204ENST00000489403 EEF1AKMT2Q5JPI9 291 aaKnown RBP11.81□□□□□ -0.52
CPSF3-204ENST00000489403 FBXO42Q6P3S6 717 aa11.81□□□□□ -0.52
CPSF3-204ENST00000489403 LAPTM4BQ86VI4 370 aa11.81□□□□□ -0.52
CPSF3-204ENST00000489403 MAGEC3Q8TD91 643 aa11.81□□□□□ -0.52
CPSF3-204ENST00000489403 MFSD3Q96ES6 412 aa11.81□□□□□ -0.52
CPSF3-204ENST00000489403 DPH7Q9BTV6 452 aa11.81□□□□□ -0.52
CPSF3-204ENST00000489403 IL22Q9GZX6 179 aa11.81□□□□□ -0.52
CPSF3-204ENST00000489403 CPAMD8Q8IZJ3 1885 aa11.8□□□□□ -0.52
CPSF3-204ENST00000489403 ITPR2Q14571 2701 aa11.8□□□□□ -0.52
CPSF3-204ENST00000489403 IGKV1-8A0A0C4DH67 115 aa11.8□□□□□ -0.52
CPSF3-204ENST00000489403 ARHGEF33A8MVX0 844 aa11.8□□□□□ -0.52
CPSF3-204ENST00000489403 IDSB3KWA1 339 aa11.8□□□□□ -0.52
CPSF3-204ENST00000489403 GOLGA8KD6RF30 607 aa11.8□□□□□ -0.52
CPSF3-204ENST00000489403 H0YGG7 62 aa11.8□□□□□ -0.52
CPSF3-204ENST00000489403 GOLGA8TH3BQL2 631 aa11.8□□□□□ -0.52
CPSF3-204ENST00000489403 FFAR3O14843 346 aa11.8□□□□□ -0.52
CPSF3-204ENST00000489403 GPR42O15529 346 aa11.8□□□□□ -0.52
CPSF3-204ENST00000489403 NIPSNAP2O75323 286 aa11.8□□□□□ -0.52
CPSF3-204ENST00000489403 USP1O94782 785 aa11.8□□□□□ -0.52
CPSF3-204ENST00000489403 STSP08842 583 aa11.8□□□□□ -0.52
CPSF3-204ENST00000489403 PRR35P0CG20 571 aa11.8□□□□□ -0.52
CPSF3-204ENST00000489403 MGAT1P26572 445 aa11.8□□□□□ -0.52
CPSF3-204ENST00000489403 FMO4P31512 558 aa11.8□□□□□ -0.52
CPSF3-204ENST00000489403 ARF3P61204 181 aaPredicted RBP11.8□□□□□ -0.52
CPSF3-204ENST00000489403 ARG2P78540 354 aa11.8□□□□□ -0.52
CPSF3-204ENST00000489403 NAA25Q14CX7 972 aa11.8□□□□□ -0.52
CPSF3-204ENST00000489403 TYSND1Q2T9J0 566 aa11.8□□□□□ -0.52
CPSF3-204ENST00000489403 ZNF324BQ6AW86 544 aaPredicted RBP11.8□□□□□ -0.52
CPSF3-204ENST00000489403 SUSD1Q6UWL2 747 aa11.8□□□□□ -0.52
CPSF3-204ENST00000489403 CES3Q6UWW8 571 aa11.8□□□□□ -0.52
CPSF3-204ENST00000489403 PAQR7Q86WK9 346 aa11.8□□□□□ -0.52
CPSF3-204ENST00000489403 KBTBD2Q8IY47 623 aa11.8□□□□□ -0.52
CPSF3-204ENST00000489403 SLC34A3Q8N130 599 aa11.8□□□□□ -0.52
CPSF3-204ENST00000489403 RNF10Q8N5U6 811 aaKnown RBP11.8□□□□□ -0.52
CPSF3-204ENST00000489403 OTUD6BQ8N6M0 293 aa11.8□□□□□ -0.52
CPSF3-204ENST00000489403 BCORP1Q8N888 145 aa11.8□□□□□ -0.52
CPSF3-204ENST00000489403 OR1N1Q8NGS0 311 aa11.8□□□□□ -0.52
CPSF3-204ENST00000489403 OR9A1PQ8NGU1 263 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms