RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 RHOCP08134 193 aa20.4■□□□□ 0.86
CTCF-202ENST00000401394 ITPKAP23677 461 aa20.4■□□□□ 0.86
CTCF-202ENST00000401394 OR1E2P47887 323 aa20.4■□□□□ 0.86
CTCF-202ENST00000401394 TOP3AQ13472 1001 aaPredicted RBP20.4■□□□□ 0.86
CTCF-202ENST00000401394 DDX39BQ13838 428 aaKnown RBP20.4■□□□□ 0.86
CTCF-202ENST00000401394 TAS1R1Q7RTX1 841 aa20.4■□□□□ 0.86
CTCF-202ENST00000401394 TMEM173Q86WV6 379 aaPredicted RBP20.4■□□□□ 0.86
CTCF-202ENST00000401394 PLPP6Q8IY26 295 aa20.4■□□□□ 0.86
CTCF-202ENST00000401394 SELENOMQ8WWX9 145 aa20.4■□□□□ 0.86
CTCF-202ENST00000401394 S100ZQ8WXG8 99 aa20.4■□□□□ 0.86
CTCF-202ENST00000401394 FOXJ1Q92949 421 aa20.4■□□□□ 0.86
CTCF-202ENST00000401394 FATE1Q969F0 183 aa20.4■□□□□ 0.86
CTCF-202ENST00000401394 BBS2Q9BXC9 721 aa20.4■□□□□ 0.86
CTCF-202ENST00000401394 CLPBQ9H078 707 aa20.4■□□□□ 0.86
CTCF-202ENST00000401394 TP63Q9H3D4 680 aaPredicted RBP20.4■□□□□ 0.86
CTCF-202ENST00000401394 FNIP2Q9P278 1114 aa20.4■□□□□ 0.86
CTCF-202ENST00000401394 NOX1Q9Y5S8 564 aa20.4■□□□□ 0.86
CTCF-202ENST00000401394 AIREO43918 545 aa20.39■□□□□ 0.85
CTCF-202ENST00000401394 ESR1P03372 595 aa20.39■□□□□ 0.85
CTCF-202ENST00000401394 RETP07949 1114 aa20.39■□□□□ 0.85
CTCF-202ENST00000401394 ENGP17813 658 aa20.39■□□□□ 0.85
CTCF-202ENST00000401394 SDC1P18827 310 aa20.39■□□□□ 0.85
CTCF-202ENST00000401394 PTGER3P43115 390 aa20.39■□□□□ 0.85
CTCF-202ENST00000401394 ACOX1Q15067 660 aa20.39■□□□□ 0.85
CTCF-202ENST00000401394 LRRC66Q68CR7 880 aa20.39■□□□□ 0.85
CTCF-202ENST00000401394 CHCHD6Q9BRQ6 235 aa20.39■□□□□ 0.85
CTCF-202ENST00000401394 SNX6Q9UNH7 406 aa20.39■□□□□ 0.85
CTCF-202ENST00000401394 M0QX08 132 aa20.39■□□□□ 0.85
CTCF-202ENST00000401394 IDH2P48735 452 aaKnown RBP20.39■□□□□ 0.85
CTCF-202ENST00000401394 PPP5CP53041 499 aa20.39■□□□□ 0.85
CTCF-202ENST00000401394 CRYBA2P53672 197 aa20.39■□□□□ 0.85
CTCF-202ENST00000401394 CAPN13Q6MZZ7 669 aaPredicted RBP20.39■□□□□ 0.85
CTCF-202ENST00000401394 PRSS55Q6UWB4 352 aaPredicted RBP20.39■□□□□ 0.85
CTCF-202ENST00000401394 ADAMTSL2Q86TH1 951 aa20.39■□□□□ 0.85
CTCF-202ENST00000401394 HORMAD1Q86X24 394 aa20.39■□□□□ 0.85
CTCF-202ENST00000401394 ATL1Q8WXF7 558 aa20.39■□□□□ 0.85
CTCF-202ENST00000401394 THG1LQ9NWX6 298 aaKnown RBP20.39■□□□□ 0.85
CTCF-202ENST00000401394 THUMPD1Q9NXG2 353 aaKnown RBP20.39■□□□□ 0.85
CTCF-202ENST00000401394 TESMINQ9Y4I5 508 aa20.39■□□□□ 0.85
CTCF-202ENST00000401394 ZNF623O75123 536 aa20.38■□□□□ 0.85
CTCF-202ENST00000401394 UPK1BO75841 260 aa20.38■□□□□ 0.85
CTCF-202ENST00000401394 MAPKAPK2P49137 400 aa20.38■□□□□ 0.85
CTCF-202ENST00000401394 TGM4P49221 684 aa20.38■□□□□ 0.85
CTCF-202ENST00000401394 TSPAN33Q86UF1 283 aa20.38■□□□□ 0.85
CTCF-202ENST00000401394 LMNTD1Q8N9Z9 388 aa20.38■□□□□ 0.85
CTCF-202ENST00000401394 WFDC5Q8TCV5 224 aa20.38■□□□□ 0.85
CTCF-202ENST00000401394 ATG10Q9H0Y0 220 aa20.38■□□□□ 0.85
CTCF-202ENST00000401394 NDRG4Q9ULP0 352 aaKnown RBP20.38■□□□□ 0.85
CTCF-202ENST00000401394 RNF6Q9Y252 685 aa20.38■□□□□ 0.85
CTCF-202ENST00000401394 SMAD6O43541 496 aaKnown RBP20.38■□□□□ 0.85
CTCF-202ENST00000401394 TLL1O43897 1013 aa20.38■□□□□ 0.85
CTCF-202ENST00000401394 ACSL4O60488 711 aa20.38■□□□□ 0.85
CTCF-202ENST00000401394 STSP08842 583 aa20.38■□□□□ 0.85
CTCF-202ENST00000401394 DDX59Q5T1V6 619 aaKnown RBP eCLIP20.38■□□□□ 0.85
CTCF-202ENST00000401394 DEPDC1Q5TB30 811 aa20.38■□□□□ 0.85
CTCF-202ENST00000401394 UBE2UQ5VVX9 321 aa20.38■□□□□ 0.85
CTCF-202ENST00000401394 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP20.38■□□□□ 0.85
CTCF-202ENST00000401394 PHF10Q8WUB8 498 aaKnown RBP20.38■□□□□ 0.85
CTCF-202ENST00000401394 C8orf48Q96LL4 319 aa20.38■□□□□ 0.85
CTCF-202ENST00000401394 SYT17Q9BSW7 474 aa20.38■□□□□ 0.85
CTCF-202ENST00000401394 TMEM121BQ9BXQ6 578 aaPredicted RBP20.38■□□□□ 0.85
CTCF-202ENST00000401394 IL1RAPQ9NPH3 570 aa20.38■□□□□ 0.85
CTCF-202ENST00000401394 PCDHGB1Q9Y5G3 927 aa20.38■□□□□ 0.85
CTCF-202ENST00000401394 MTX2O75431 263 aa20.37■□□□□ 0.85
CTCF-202ENST00000401394 OAZ2O95190 189 aa20.37■□□□□ 0.85
CTCF-202ENST00000401394 ITGAMP11215 1152 aa20.37■□□□□ 0.85
CTCF-202ENST00000401394 TYMPP19971 482 aa20.37■□□□□ 0.85
CTCF-202ENST00000401394 CTGFP29279 349 aa20.37■□□□□ 0.85
CTCF-202ENST00000401394 CCL23P55773 120 aa20.37■□□□□ 0.85
CTCF-202ENST00000401394 DSC3Q14574 896 aa20.37■□□□□ 0.85
CTCF-202ENST00000401394 ALG1LQ6GMV1 187 aa20.37■□□□□ 0.85
CTCF-202ENST00000401394 FAM217AQ8IXS0 508 aa20.37■□□□□ 0.85
CTCF-202ENST00000401394 KCNS3Q9BQ31 491 aa20.37■□□□□ 0.85
CTCF-202ENST00000401394 COPS4Q9BT78 406 aa20.37■□□□□ 0.85
CTCF-202ENST00000401394 REXO4Q9GZR2 422 aaKnown RBP20.37■□□□□ 0.85
CTCF-202ENST00000401394 IL26Q9NPH9 171 aa20.37■□□□□ 0.85
CTCF-202ENST00000401394 ERVK13-1Q9NX77 482 aa20.37■□□□□ 0.85
CTCF-202ENST00000401394 DYTNA2CJ06 578 aa20.37■□□□□ 0.85
CTCF-202ENST00000401394 KDELR3O43731 214 aa20.37■□□□□ 0.85
CTCF-202ENST00000401394 SLC10A3P09131 477 aa20.37■□□□□ 0.85
CTCF-202ENST00000401394 JUNDP17535 347 aa20.37■□□□□ 0.85
CTCF-202ENST00000401394 ATF6P18850 670 aa20.37■□□□□ 0.85
CTCF-202ENST00000401394 PARP16Q8N5Y8 322 aa20.37■□□□□ 0.85
CTCF-202ENST00000401394 PANX1Q96RD7 426 aa20.37■□□□□ 0.85
CTCF-202ENST00000401394 CLSTN3Q9BQT9 956 aa20.37■□□□□ 0.85
CTCF-202ENST00000401394 FAM126AQ9BYI3 521 aaPredicted RBP20.37■□□□□ 0.85
CTCF-202ENST00000401394 TPK1Q9H3S4 243 aa20.37■□□□□ 0.85
CTCF-202ENST00000401394 PCDHGA6Q9Y5G7 932 aa20.37■□□□□ 0.85
CTCF-202ENST00000401394 TNPO3Q9Y5L0 923 aaKnown RBP20.37■□□□□ 0.85
CTCF-202ENST00000401394 FAM220BPB1ANY3 271 aa20.37■□□□□ 0.85
CTCF-202ENST00000401394 KCNK5O95279 499 aa20.37■□□□□ 0.85
CTCF-202ENST00000401394 SERPINB10P48595 397 aa20.37■□□□□ 0.85
CTCF-202ENST00000401394 COPZ1P61923 177 aa20.37■□□□□ 0.85
CTCF-202ENST00000401394 ZNF404Q494X3 552 aa20.37■□□□□ 0.85
CTCF-202ENST00000401394 KLHL17Q6TDP4 642 aa20.37■□□□□ 0.85
CTCF-202ENST00000401394 METTL4Q8N3J2 472 aa20.37■□□□□ 0.85
CTCF-202ENST00000401394 PARK7Q99497 189 aaKnown RBP20.37■□□□□ 0.85
CTCF-202ENST00000401394 CDADC1Q9BWV3 514 aa20.37■□□□□ 0.85
CTCF-202ENST00000401394 MTMR11A4FU01 709 aa20.36■□□□□ 0.85
CTCF-202ENST00000401394 PABPN1LA6NDY0 278 aaKnown RBP20.36■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms