RNA–Protein interactions for RNA: ENST00000339865.9

USP47-202, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 2 BASIC

Gene USP47, Length 7,775 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-202ENST00000339865 CPSF1Q10570 1443 aaKnown RBP12.56□□□□□ -0.4
USP47-202ENST00000339865 SH3PXD2BA1X283 911 aa12.56□□□□□ -0.4
USP47-202ENST00000339865 GMDSO60547 372 aa12.56□□□□□ -0.4
USP47-202ENST00000339865 ALPPL2P10696 532 aa12.56□□□□□ -0.4
USP47-202ENST00000339865 CD72P21854 359 aa12.56□□□□□ -0.4
USP47-202ENST00000339865 PPM1JQ5JR12 505 aa12.56□□□□□ -0.4
USP47-202ENST00000339865 ATAT1Q5SQI0 421 aa12.56□□□□□ -0.4
USP47-202ENST00000339865 SPATC1Q76KD6 591 aa12.56□□□□□ -0.4
USP47-202ENST00000339865 LDB1Q86U70 411 aaPredicted RBP12.56□□□□□ -0.4
USP47-202ENST00000339865 PYROXD2Q8N2H3 581 aa12.56□□□□□ -0.4
USP47-202ENST00000339865 MAPK3P27361 379 aaPredicted RBP12.56□□□□□ -0.4
USP47-202ENST00000339865 CCKBRP32239 447 aa12.56□□□□□ -0.4
USP47-202ENST00000339865 MAPK8P45983 427 aa12.56□□□□□ -0.4
USP47-202ENST00000339865 C14orf28Q4W4Y0 310 aa12.56□□□□□ -0.4
USP47-202ENST00000339865 TIGD3Q6B0B8 471 aa12.56□□□□□ -0.4
USP47-202ENST00000339865 ANKRD52Q8NB46 1076 aa12.56□□□□□ -0.4
USP47-202ENST00000339865 LAMP5Q9UJQ1 280 aa12.56□□□□□ -0.4
USP47-202ENST00000339865 FER1L6Q2WGJ9 1857 aa12.56□□□□□ -0.4
USP47-202ENST00000339865 LRRC66Q68CR7 880 aa12.55□□□□□ -0.4
USP47-202ENST00000339865 UNC5BQ8IZJ1 945 aa12.55□□□□□ -0.4
USP47-202ENST00000339865 BEST3Q8N1M1 668 aa12.55□□□□□ -0.4
USP47-202ENST00000339865 ASCC1Q8N9N2 400 aaKnown RBP12.55□□□□□ -0.4
USP47-202ENST00000339865 DAGLBQ8NCG7 672 aa12.55□□□□□ -0.4
USP47-202ENST00000339865 TMEM100Q9NV29 134 aa12.55□□□□□ -0.4
USP47-202ENST00000339865 GRID2O43424 1007 aa12.55□□□□□ -0.4
USP47-202ENST00000339865 IFNGR1P15260 489 aa12.55□□□□□ -0.4
USP47-202ENST00000339865 WASP42768 502 aa12.55□□□□□ -0.4
USP47-202ENST00000339865 ENTPD1P49961 510 aa12.55□□□□□ -0.4
USP47-202ENST00000339865 PRKXP51817 358 aa12.55□□□□□ -0.4
USP47-202ENST00000339865 NUDT6P53370 316 aa12.55□□□□□ -0.4
USP47-202ENST00000339865 TLE1Q04724 770 aa12.55□□□□□ -0.4
USP47-202ENST00000339865 TMEM69Q5SWH9 247 aa12.55□□□□□ -0.4
USP47-202ENST00000339865 HECTD2Q5U5R9 776 aa12.55□□□□□ -0.4
USP47-202ENST00000339865 UPF1Q92900 1129 aaKnown RBP eCLIP12.55□□□□□ -0.48e-7■■■□□ 14.9
USP47-202ENST00000339865 YIPF4Q9BSR8 244 aa12.55□□□□□ -0.4
USP47-202ENST00000339865 UNC93B1Q9H1C4 597 aa12.55□□□□□ -0.4
USP47-202ENST00000339865 ITM2CQ9NQX7 267 aa12.55□□□□□ -0.4
USP47-202ENST00000339865 MYPNQ86TC9 1320 aa12.55□□□□□ -0.4
USP47-202ENST00000339865 RTTNQ86VV8 2226 aa12.55□□□□□ -0.4
USP47-202ENST00000339865 BOLA2-SMG1P6H3BVE0 249 aa12.55□□□□□ -0.4
USP47-202ENST00000339865 C2P06681 752 aa12.55□□□□□ -0.4
USP47-202ENST00000339865 DEFA6Q01524 100 aa12.55□□□□□ -0.4
USP47-202ENST00000339865 GRIK4Q16099 956 aa12.55□□□□□ -0.4
USP47-202ENST00000339865 MED27Q6P2C8 311 aa12.55□□□□□ -0.4
USP47-202ENST00000339865 TRABD2AQ86V40 505 aa12.55□□□□□ -0.4
USP47-202ENST00000339865 DTX3Q8N9I9 347 aa12.55□□□□□ -0.4
USP47-202ENST00000339865 OR6Q1Q8NGQ2 317 aa12.55□□□□□ -0.4
USP47-202ENST00000339865 ITPAQ9BY32 194 aa12.55□□□□□ -0.4
USP47-202ENST00000339865 PCDHAC1Q9H158 963 aa12.55□□□□□ -0.4
USP47-202ENST00000339865 ZNF334Q9HCZ1 680 aaPredicted RBP12.55□□□□□ -0.4
USP47-202ENST00000339865 MRPL17Q9NRX2 175 aaKnown RBP12.55□□□□□ -0.4
USP47-202ENST00000339865 NYAP2Q9P242 653 aa12.55□□□□□ -0.4
USP47-202ENST00000339865 ZNF223Q9UK11 482 aaPredicted RBP12.55□□□□□ -0.4
USP47-202ENST00000339865 CYP8B1Q9UNU6 501 aa12.55□□□□□ -0.4
USP47-202ENST00000339865 QRICH2Q9H0J4 1663 aa12.55□□□□□ -0.4
USP47-202ENST00000339865 IL33O95760 270 aa12.55□□□□□ -0.4
USP47-202ENST00000339865 ADAP00813 363 aa12.55□□□□□ -0.4
USP47-202ENST00000339865 ALPPP05187 535 aa12.55□□□□□ -0.4
USP47-202ENST00000339865 SREBF1P36956 1147 aa12.55□□□□□ -0.4
USP47-202ENST00000339865 GPR68Q15743 365 aa12.55□□□□□ -0.4
USP47-202ENST00000339865 ZBED5Q49AG3 693 aa12.55□□□□□ -0.4
USP47-202ENST00000339865 SP8Q8IXZ3 490 aa12.55□□□□□ -0.4
USP47-202ENST00000339865 PRSS58Q8IYP2 241 aa12.55□□□□□ -0.4
USP47-202ENST00000339865 ZNF781Q8N8C0 355 aa12.55□□□□□ -0.4
USP47-202ENST00000339865 ZSCAN4Q8NAM6 433 aaPredicted RBP12.55□□□□□ -0.4
USP47-202ENST00000339865 ART4Q93070 314 aa12.55□□□□□ -0.4
USP47-202ENST00000339865 SAMD11Q96NU1 681 aa12.55□□□□□ -0.4
USP47-202ENST00000339865 OR14A2Q96R54 314 aa12.55□□□□□ -0.4
USP47-202ENST00000339865 WASF2Q9Y6W5 498 aa12.55□□□□□ -0.4
USP47-202ENST00000339865 CDK12Q9NYV4 1490 aaPredicted RBP12.55□□□□□ -0.4
USP47-202ENST00000339865 SPATA31D3P0C874 917 aa12.55□□□□□ -0.4
USP47-202ENST00000339865 HOXC8P31273 242 aa12.55□□□□□ -0.4
USP47-202ENST00000339865 CDKAL1Q5VV42 579 aa12.55□□□□□ -0.4
USP47-202ENST00000339865 SPATA31D4Q6ZUB0 917 aa12.55□□□□□ -0.4
USP47-202ENST00000339865 GLYATL2Q8WU03 294 aa12.55□□□□□ -0.4
USP47-202ENST00000339865 SENP8Q96LD8 212 aa12.55□□□□□ -0.4
USP47-202ENST00000339865 ACSS3Q9H6R3 686 aa12.55□□□□□ -0.4
USP47-202ENST00000339865 CALML5Q9NZT1 146 aa12.55□□□□□ -0.4
USP47-202ENST00000339865 AGO1Q9UL18 857 aaKnown RBP12.55□□□□□ -0.4
USP47-202ENST00000339865 PCDHB3Q9Y5E6 796 aa12.55□□□□□ -0.4
USP47-202ENST00000339865 A0A1B0GVT2 93 aa12.55□□□□□ -0.4
USP47-202ENST00000339865 HTR3EA5X5Y0 456 aa12.55□□□□□ -0.4
USP47-202ENST00000339865 STK16O75716 305 aa12.55□□□□□ -0.4
USP47-202ENST00000339865 RECQL4O94761 1208 aa12.55□□□□□ -0.4
USP47-202ENST00000339865 TGFB3P10600 412 aa12.55□□□□□ -0.4
USP47-202ENST00000339865 VEGFAP15692 232 aaPredicted RBP12.55□□□□□ -0.4
USP47-202ENST00000339865 GSTM2P28161 218 aa12.55□□□□□ -0.4
USP47-202ENST00000339865 CASRP41180 1078 aa12.55□□□□□ -0.4
USP47-202ENST00000339865 FGL1Q08830 312 aa12.55□□□□□ -0.4
USP47-202ENST00000339865 RBM39Q14498 530 aaKnown RBP12.55□□□□□ -0.4
USP47-202ENST00000339865 PLEKHN1Q494U1 663 aaPredicted RBP12.55□□□□□ -0.4
USP47-202ENST00000339865 FBXO43Q4G163 708 aa12.55□□□□□ -0.4
USP47-202ENST00000339865 XKR5Q6UX68 686 aa12.55□□□□□ -0.4
USP47-202ENST00000339865 PAQR5Q9NXK6 330 aaPredicted RBP12.55□□□□□ -0.4
USP47-202ENST00000339865 REV1Q9UBZ9 1251 aa12.55□□□□□ -0.4
USP47-202ENST00000339865 DOCK10Q96BY6 2186 aa12.55□□□□□ -0.4
USP47-202ENST00000339865 AP2A1O95782 977 aa12.55□□□□□ -0.4
USP47-202ENST00000339865 VIPP01282 170 aa12.55□□□□□ -0.4
USP47-202ENST00000339865 PKMP14618 531 aaKnown RBP12.55□□□□□ -0.4
USP47-202ENST00000339865 SMSP52788 366 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms