RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 DUSP4Q13115 394 aa13.56□□□□□ -0.24
CSPG4-201ENST00000308508 SLC13A2Q13183 592 aa13.56□□□□□ -0.24
CSPG4-201ENST00000308508 LDB1Q86U70 411 aaPredicted RBP13.56□□□□□ -0.24
CSPG4-201ENST00000308508 COMTD1Q86VU5 262 aa13.56□□□□□ -0.24
CSPG4-201ENST00000308508 CHERPQ8IWX8 916 aaKnown RBP13.56□□□□□ -0.24
CSPG4-201ENST00000308508 MFSD3Q96ES6 412 aa13.56□□□□□ -0.24
CSPG4-201ENST00000308508 UCK2Q9BZX2 261 aa13.56□□□□□ -0.24
CSPG4-201ENST00000308508 ACTR6Q9GZN1 396 aa13.56□□□□□ -0.24
CSPG4-201ENST00000308508 ZIM2Q9NZV7 527 aa13.56□□□□□ -0.24
CSPG4-201ENST00000308508 SLC27A5Q9Y2P5 690 aa13.56□□□□□ -0.24
CSPG4-201ENST00000308508 SLC8B1Q6J4K2 584 aa13.56□□□□□ -0.24
CSPG4-201ENST00000308508 SLC16A9Q7RTY1 509 aa13.56□□□□□ -0.24
CSPG4-201ENST00000308508 METTL25Q8N6Q8 603 aa13.56□□□□□ -0.24
CSPG4-201ENST00000308508 EIF5A2Q9GZV4 153 aaKnown RBP13.56□□□□□ -0.24
CSPG4-201ENST00000308508 ACTR3BQ9P1U1 418 aa13.56□□□□□ -0.24
CSPG4-201ENST00000308508 WASF3Q9UPY6 502 aa13.56□□□□□ -0.24
CSPG4-201ENST00000308508 AGAP5A6NIR3 686 aa13.56□□□□□ -0.24
CSPG4-201ENST00000308508 GKN3PP0CG01 181 aa13.56□□□□□ -0.24
CSPG4-201ENST00000308508 YBEYP58557 167 aaPredicted RBP13.56□□□□□ -0.24
CSPG4-201ENST00000308508 HERV-K104P61576 105 aa13.56□□□□□ -0.24
CSPG4-201ENST00000308508 EN1Q05925 392 aaPredicted RBP13.56□□□□□ -0.24
CSPG4-201ENST00000308508 KLF1Q13351 362 aaPredicted RBP13.56□□□□□ -0.24
CSPG4-201ENST00000308508 TRAM1Q15629 374 aa13.56□□□□□ -0.24
CSPG4-201ENST00000308508 SPIN4Q56A73 249 aa13.56□□□□□ -0.24
CSPG4-201ENST00000308508 TNFAIP8L2Q6P589 184 aaPredicted RBP13.56□□□□□ -0.24
CSPG4-201ENST00000308508 MOB2Q70IA6 237 aa13.56□□□□□ -0.24
CSPG4-201ENST00000308508 SLC5A7Q9GZV3 580 aa13.56□□□□□ -0.24
CSPG4-201ENST00000308508 MATN3O15232 486 aa13.56□□□□□ -0.24
CSPG4-201ENST00000308508 CCKBRP32239 447 aa13.56□□□□□ -0.24
CSPG4-201ENST00000308508 DCDC5Q6ZRR9 648 aa13.56□□□□□ -0.24
CSPG4-201ENST00000308508 BRSK1Q8TDC3 778 aa13.56□□□□□ -0.24
CSPG4-201ENST00000308508 FEM1CQ96JP0 617 aa13.56□□□□□ -0.24
CSPG4-201ENST00000308508 HBEGFQ99075 208 aa13.56□□□□□ -0.24
CSPG4-201ENST00000308508 OR6C75A6NL08 312 aa13.55□□□□□ -0.24
CSPG4-201ENST00000308508 LRCH4O75427 683 aa13.55□□□□□ -0.24
CSPG4-201ENST00000308508 PBX1P40424 430 aa13.55□□□□□ -0.24
CSPG4-201ENST00000308508 CNTN2Q02246 1040 aa13.55□□□□□ -0.24
CSPG4-201ENST00000308508 SEMA3AQ14563 771 aa13.55□□□□□ -0.24
CSPG4-201ENST00000308508 TSTD2Q5T7W7 516 aa13.55□□□□□ -0.24
CSPG4-201ENST00000308508 IRGQQ8WZA9 623 aa13.55□□□□□ -0.24
CSPG4-201ENST00000308508 GAL3ST4Q96RP7 486 aa13.55□□□□□ -0.24
CSPG4-201ENST00000308508 CPXM1Q96SM3 734 aa13.55□□□□□ -0.24
CSPG4-201ENST00000308508 MYNNQ9NPC7 610 aa13.55□□□□□ -0.24
CSPG4-201ENST00000308508 PPM1HQ9ULR3 514 aa13.55□□□□□ -0.24
CSPG4-201ENST00000308508 C2orf92A0A1B0GVN3 265 aa13.55□□□□□ -0.24
CSPG4-201ENST00000308508 A0A1W2PQH9 124 aa13.55□□□□□ -0.24
CSPG4-201ENST00000308508 ZNF726A6NNF4 738 aa13.55□□□□□ -0.24
CSPG4-201ENST00000308508 ITGA5P08648 1049 aa13.55□□□□□ -0.24
CSPG4-201ENST00000308508 DSG2Q14126 1118 aa13.55□□□□□ -0.24
CSPG4-201ENST00000308508 TAF1AQ15573 450 aaPredicted RBP13.55□□□□□ -0.24
CSPG4-201ENST00000308508 ZNF423Q2M1K9 1284 aa13.55□□□□□ -0.24
CSPG4-201ENST00000308508 HFE2Q6ZVN8 426 aa13.55□□□□□ -0.24
CSPG4-201ENST00000308508 CANT1Q8WVQ1 401 aa13.55□□□□□ -0.24
CSPG4-201ENST00000308508 EMID1Q96A84 441 aaPredicted RBP13.55□□□□□ -0.24
CSPG4-201ENST00000308508 ADAMTS3O15072 1205 aa13.55□□□□□ -0.24
CSPG4-201ENST00000308508 GNMTQ14749 295 aa13.55□□□□□ -0.24
CSPG4-201ENST00000308508 UAP1L1Q3KQV9 507 aa13.55□□□□□ -0.24
CSPG4-201ENST00000308508 MINDY4Q4G0A6 757 aa13.55□□□□□ -0.24
CSPG4-201ENST00000308508 SIDT2Q8NBJ9 832 aaKnown RBP13.55□□□□□ -0.24
CSPG4-201ENST00000308508 FZD4Q9ULV1 537 aa13.55□□□□□ -0.24
CSPG4-201ENST00000308508 HIF3AQ9Y2N7 669 aa13.55□□□□□ -0.24
CSPG4-201ENST00000308508 RFPL1O75677 317 aa13.55□□□□□ -0.24
CSPG4-201ENST00000308508 CDH15P55291 814 aa13.55□□□□□ -0.24
CSPG4-201ENST00000308508 C1QTNF8P60827 252 aa13.55□□□□□ -0.24
CSPG4-201ENST00000308508 KIAA1614Q5VZ46 1190 aa13.55□□□□□ -0.24
CSPG4-201ENST00000308508 SERPINA9Q86WD7 417 aa13.55□□□□□ -0.24
CSPG4-201ENST00000308508 OSTF1Q92882 214 aa13.55□□□□□ -0.24
CSPG4-201ENST00000308508 TMEM68Q96MH6 324 aa13.55□□□□□ -0.24
CSPG4-201ENST00000308508 TFB2MQ9H5Q4 396 aaKnown RBP13.55□□□□□ -0.24
CSPG4-201ENST00000308508 ZNF226Q9NYT6 803 aa13.55□□□□□ -0.24
CSPG4-201ENST00000308508 LRRC72A6NJI9 287 aa13.55□□□□□ -0.24
CSPG4-201ENST00000308508 INSIG1O15503 277 aa13.55□□□□□ -0.24
CSPG4-201ENST00000308508 HSPA12AO43301 675 aa13.55□□□□□ -0.24
CSPG4-201ENST00000308508 GRM5P41594 1212 aa13.55□□□□□ -0.24
CSPG4-201ENST00000308508 GLP1RP43220 463 aa13.55□□□□□ -0.24
CSPG4-201ENST00000308508 MAGEA6P43360 314 aa13.55□□□□□ -0.24
CSPG4-201ENST00000308508 NFKB2Q00653 900 aa13.55□□□□□ -0.24
CSPG4-201ENST00000308508 CAPSQ13938 189 aa13.55□□□□□ -0.24
CSPG4-201ENST00000308508 POGLUT1Q8NBL1 392 aa13.55□□□□□ -0.24
CSPG4-201ENST00000308508 TBC1D14Q9P2M4 693 aa13.55□□□□□ -0.24
CSPG4-201ENST00000308508 E2F3O00716 465 aa13.55□□□□□ -0.24
CSPG4-201ENST00000308508 NR2C1P13056 603 aa13.55□□□□□ -0.24
CSPG4-201ENST00000308508 PBX3P40426 434 aa13.55□□□□□ -0.24
CSPG4-201ENST00000308508 NDST2P52849 883 aa13.55□□□□□ -0.24
CSPG4-201ENST00000308508 PYURFQ96I23 114 aa13.55□□□□□ -0.24
CSPG4-201ENST00000308508 TREX2Q9BQ50 279 aaPredicted RBP13.55□□□□□ -0.24
CSPG4-201ENST00000308508 RNF121Q9H920 327 aa13.55□□□□□ -0.24
CSPG4-201ENST00000308508 ABI3Q9P2A4 366 aa13.55□□□□□ -0.24
CSPG4-201ENST00000308508 MICAL3Q7RTP6 2002 aa13.55□□□□□ -0.24
CSPG4-201ENST00000308508 CLIC1O00299 241 aa13.55□□□□□ -0.24
CSPG4-201ENST00000308508 SMIM10L2AP0DMW4 78 aa13.55□□□□□ -0.24
CSPG4-201ENST00000308508 SMIM10L2BP0DMW5 78 aa13.55□□□□□ -0.24
CSPG4-201ENST00000308508 CKMT2P17540 419 aa13.55□□□□□ -0.24
CSPG4-201ENST00000308508 DSTNP60981 165 aa13.55□□□□□ -0.24
CSPG4-201ENST00000308508 DRICH1Q6PGQ1 229 aaPredicted RBP13.55□□□□□ -0.24
CSPG4-201ENST00000308508 POC1BQ8TC44 478 aa13.55□□□□□ -0.24
CSPG4-201ENST00000308508 PCDHB16Q9NRJ7 776 aa13.55□□□□□ -0.24
CSPG4-201ENST00000308508 GNG8Q9UK08 70 aa13.55□□□□□ -0.24
CSPG4-201ENST00000308508 C12orf71A8MTZ7 269 aa13.54□□□□□ -0.24
CSPG4-201ENST00000308508 FOXO6A8MYZ6 492 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms