RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 RNF19AQ9NV58 838 aa9.65□□□□□ -0.86
COL6A3-201ENST00000295550 GABRDO14764 452 aa9.65□□□□□ -0.87
COL6A3-201ENST00000295550 PCSK2P16519 638 aa9.65□□□□□ -0.87
COL6A3-201ENST00000295550 HTR1BP28222 390 aa9.65□□□□□ -0.87
COL6A3-201ENST00000295550 SLC6A9P48067 706 aa9.65□□□□□ -0.87
COL6A3-201ENST00000295550 C8orf48Q96LL4 319 aa9.65□□□□□ -0.87
COL6A3-201ENST00000295550 ABCD2Q9UBJ2 740 aa9.65□□□□□ -0.87
COL6A3-201ENST00000295550 YAP1P46937 504 aaKnown RBP9.65□□□□□ -0.87
COL6A3-201ENST00000295550 MAXP61244 160 aa9.65□□□□□ -0.87
COL6A3-201ENST00000295550 SLC10A6Q3KNW5 377 aa9.65□□□□□ -0.87
COL6A3-201ENST00000295550 SLC9B1Q4ZJI4 515 aa9.65□□□□□ -0.87
COL6A3-201ENST00000295550 NUP54Q7Z3B4 507 aa9.65□□□□□ -0.87
COL6A3-201ENST00000295550 TMED4Q7Z7H5 227 aa9.65□□□□□ -0.87
COL6A3-201ENST00000295550 OR10A6Q8NH74 314 aa9.65□□□□□ -0.87
COL6A3-201ENST00000295550 PRICKLE1Q96MT3 831 aaPredicted RBP9.65□□□□□ -0.87
COL6A3-201ENST00000295550 GDAP2Q9NXN4 497 aa9.65□□□□□ -0.87
COL6A3-201ENST00000295550 PCDH10Q9P2E7 1040 aa9.65□□□□□ -0.87
COL6A3-201ENST00000295550 DPP7Q9UHL4 492 aa9.65□□□□□ -0.87
COL6A3-201ENST00000295550 SPTBN1Q01082 2364 aaKnown RBP9.65□□□□□ -0.87
COL6A3-201ENST00000295550 A0A1W2PQH9 124 aa9.64□□□□□ -0.87
COL6A3-201ENST00000295550 CLDN9O95484 217 aa9.64□□□□□ -0.87
COL6A3-201ENST00000295550 CHRM5P08912 532 aaPredicted RBP9.64□□□□□ -0.87
COL6A3-201ENST00000295550 DLDP09622 509 aaKnown RBP9.64□□□□□ -0.87
COL6A3-201ENST00000295550 VAMP1P23763 118 aa9.64□□□□□ -0.87
COL6A3-201ENST00000295550 CSTF2P33240 577 aaKnown RBP eCLIP9.64□□□□□ -0.87
COL6A3-201ENST00000295550 MAP3K8P41279 467 aa9.64□□□□□ -0.87
COL6A3-201ENST00000295550 NDST2P52849 883 aa9.64□□□□□ -0.87
COL6A3-201ENST00000295550 ZDHHC21Q8IVQ6 265 aa9.64□□□□□ -0.87
COL6A3-201ENST00000295550 TOR1AIP2Q8NFQ8 470 aa9.64□□□□□ -0.87
COL6A3-201ENST00000295550 RPS3P23396 243 aaKnown RBP eCLIP9.64□□□□□ -0.87
COL6A3-201ENST00000295550 CACNG1Q06432 222 aa9.64□□□□□ -0.87
COL6A3-201ENST00000295550 PABPC1LQ4VXU2 614 aaKnown RBP9.64□□□□□ -0.87
COL6A3-201ENST00000295550 ADAMTS15Q8TE58 950 aa9.64□□□□□ -0.87
COL6A3-201ENST00000295550 PPM1HQ9ULR3 514 aa9.64□□□□□ -0.87
COL6A3-201ENST00000295550 NOP16Q9Y3C1 178 aaKnown RBP9.64□□□□□ -0.87
COL6A3-201ENST00000295550 RPL36Q9Y3U8 105 aaKnown RBP9.64□□□□□ -0.87
COL6A3-201ENST00000295550 C9JVG2 144 aa9.64□□□□□ -0.87
COL6A3-201ENST00000295550 VARSP26640 1264 aaKnown RBP9.64□□□□□ -0.87
COL6A3-201ENST00000295550 DCKP27707 260 aa9.64□□□□□ -0.87
COL6A3-201ENST00000295550 GPR158Q5T848 1215 aa9.64□□□□□ -0.87
COL6A3-201ENST00000295550 TXNRD3NBQ6F5E7 133 aa9.64□□□□□ -0.87
COL6A3-201ENST00000295550 NCCRP1Q6ZVX7 275 aaPredicted RBP9.64□□□□□ -0.87
COL6A3-201ENST00000295550 POLR2J3Q9H1A7 115 aaKnown RBP9.64□□□□□ -0.87
COL6A3-201ENST00000295550 OR51V1Q9H2C8 321 aa9.64□□□□□ -0.87
COL6A3-201ENST00000295550 VNN2O95498 520 aa9.64□□□□□ -0.87
COL6A3-201ENST00000295550 MAGEA11P43364 429 aa9.64□□□□□ -0.87
COL6A3-201ENST00000295550 LILRA4P59901 499 aa9.64□□□□□ -0.87
COL6A3-201ENST00000295550 OGDHQ02218 1023 aa9.64□□□□□ -0.87
COL6A3-201ENST00000295550 CREMQ03060 361 aa9.64□□□□□ -0.87
COL6A3-201ENST00000295550 TEAD4Q15561 434 aa9.64□□□□□ -0.87
COL6A3-201ENST00000295550 SPIN3Q5JUX0 258 aa9.64□□□□□ -0.87
COL6A3-201ENST00000295550 TM6SF2Q9BZW4 377 aa9.64□□□□□ -0.87
COL6A3-201ENST00000295550 OR2B2Q9GZK3 357 aa9.64□□□□□ -0.87
COL6A3-201ENST00000295550 TRAV6A0A075B6T7 132 aa9.64□□□□□ -0.87
COL6A3-201ENST00000295550 CXorf49A8MYA2 514 aaPredicted RBP9.64□□□□□ -0.87
COL6A3-201ENST00000295550 M0R233 179 aa9.64□□□□□ -0.87
COL6A3-201ENST00000295550 MAFKO60675 156 aa9.64□□□□□ -0.87
COL6A3-201ENST00000295550 TBL1XO60907 577 aa9.64□□□□□ -0.87
COL6A3-201ENST00000295550 RAP2AP10114 183 aa9.64□□□□□ -0.87
COL6A3-201ENST00000295550 SLC7A1P30825 629 aa9.64□□□□□ -0.87
COL6A3-201ENST00000295550 ZNF81P51508 661 aa9.64□□□□□ -0.87
COL6A3-201ENST00000295550 BNIP3Q12983 259 aa9.64□□□□□ -0.87
COL6A3-201ENST00000295550 TARDBPQ13148 414 aaKnown RBP eCLIP9.64□□□□□ -0.87
COL6A3-201ENST00000295550 DNAJB7Q7Z6W7 309 aaPredicted RBP9.64□□□□□ -0.87
COL6A3-201ENST00000295550 DEFB128Q7Z7B8 93 aa9.64□□□□□ -0.87
COL6A3-201ENST00000295550 ZBTB2Q8N680 514 aa9.64□□□□□ -0.87
COL6A3-201ENST00000295550 TCEAL4Q96EI5 215 aa9.64□□□□□ -0.87
COL6A3-201ENST00000295550 MYO19Q96H55 970 aa9.64□□□□□ -0.87
COL6A3-201ENST00000295550 GOLGA2P5Q9HBQ8 144 aa9.64□□□□□ -0.87
COL6A3-201ENST00000295550 TVP23AA6NH52 213 aa9.64□□□□□ -0.87
COL6A3-201ENST00000295550 CYP17A1P05093 508 aa9.64□□□□□ -0.87
COL6A3-201ENST00000295550 F8A1P23610 371 aa9.64□□□□□ -0.87
COL6A3-201ENST00000295550 HSPB3Q12988 150 aa9.64□□□□□ -0.87
COL6A3-201ENST00000295550 AIMP2Q13155 320 aaKnown RBP9.64□□□□□ -0.87
COL6A3-201ENST00000295550 ATXN7L2Q5T6C5 722 aaPredicted RBP9.64□□□□□ -0.87
COL6A3-201ENST00000295550 ZDHHC20Q5W0Z9 365 aa9.64□□□□□ -0.87
COL6A3-201ENST00000295550 CRYGNQ8WXF5 182 aa9.64□□□□□ -0.87
COL6A3-201ENST00000295550 SLC38A4Q969I6 547 aa9.64□□□□□ -0.87
COL6A3-201ENST00000295550 ADAM7Q9H2U9 754 aa9.64□□□□□ -0.87
COL6A3-201ENST00000295550 SIRPGQ9P1W8 387 aa9.64□□□□□ -0.87
COL6A3-201ENST00000295550 C13orf42A0A1B0GVH6 325 aa9.64□□□□□ -0.87
COL6A3-201ENST00000295550 OR6C75A6NL08 312 aa9.64□□□□□ -0.87
COL6A3-201ENST00000295550 ISM1B1AKI9 464 aa9.64□□□□□ -0.87
COL6A3-201ENST00000295550 FAM189A1O60320 539 aa9.64□□□□□ -0.87
COL6A3-201ENST00000295550 STK16O75716 305 aa9.64□□□□□ -0.87
COL6A3-201ENST00000295550 RYKP34925 604 aa9.64□□□□□ -0.87
COL6A3-201ENST00000295550 TLE2Q04725 743 aa9.64□□□□□ -0.87
COL6A3-201ENST00000295550 IL23RQ5VWK5 629 aa9.64□□□□□ -0.87
COL6A3-201ENST00000295550 PARGQ86W56 976 aa9.64□□□□□ -0.87
COL6A3-201ENST00000295550 GLIS1Q8NBF1 620 aa9.64□□□□□ -0.87
COL6A3-201ENST00000295550 RABL2AQ9UBK7 228 aaPredicted RBP9.64□□□□□ -0.87
COL6A3-201ENST00000295550 B8ZZF3 427 aa9.64□□□□□ -0.87
COL6A3-201ENST00000295550 FNTBP49356 437 aa9.64□□□□□ -0.87
COL6A3-201ENST00000295550 RAB5BP61020 215 aa9.64□□□□□ -0.87
COL6A3-201ENST00000295550 MAP2K5Q13163 448 aa9.64□□□□□ -0.87
COL6A3-201ENST00000295550 TUSC3Q13454 348 aa9.64□□□□□ -0.87
COL6A3-201ENST00000295550 C15orf40Q8WUR7 153 aa9.64□□□□□ -0.87
COL6A3-201ENST00000295550 NDRG1Q92597 394 aaKnown RBP9.64□□□□□ -0.87
COL6A3-201ENST00000295550 WACQ9BTA9 647 aa9.64□□□□□ -0.87
COL6A3-201ENST00000295550 EVA1BQ9NVM1 165 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms