RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 PGAM4Q8N0Y7 254 aa11.12□□□□□ -0.63
CLIP1-219ENST00000620786 NXPE1Q8N323 547 aa11.12□□□□□ -0.63
CLIP1-219ENST00000620786 OR10H4Q8NGA5 316 aa11.12□□□□□ -0.63
CLIP1-219ENST00000620786 TMEM209Q96SK2 561 aa11.12□□□□□ -0.63
CLIP1-219ENST00000620786 NMUR2Q9GZQ4 415 aa11.12□□□□□ -0.63
CLIP1-219ENST00000620786 SLC17A6Q9P2U8 582 aa11.12□□□□□ -0.63
CLIP1-219ENST00000620786 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP11.12□□□□□ -0.63
CLIP1-219ENST00000620786 ZNF142P52746 1687 aaPredicted RBP11.12□□□□□ -0.63
CLIP1-219ENST00000620786 A0A1W2PQ72 361 aa11.11□□□□□ -0.63
CLIP1-219ENST00000620786 A6NCN8 305 aa11.11□□□□□ -0.63
CLIP1-219ENST00000620786 MPZL2O60487 215 aa11.11□□□□□ -0.63
CLIP1-219ENST00000620786 PLOD3O60568 738 aa11.11□□□□□ -0.63
CLIP1-219ENST00000620786 PTX3P26022 381 aaPredicted RBP11.11□□□□□ -0.63
CLIP1-219ENST00000620786 PTGIRP43119 386 aa11.11□□□□□ -0.63
CLIP1-219ENST00000620786 EIF2B2P49770 351 aaKnown RBP11.11□□□□□ -0.63
CLIP1-219ENST00000620786 GDI2P50395 445 aaKnown RBP11.11□□□□□ -0.63
CLIP1-219ENST00000620786 TRAP1Q12931 704 aaKnown RBP11.11□□□□□ -0.63
CLIP1-219ENST00000620786 PACS2Q86VP3 889 aa11.11□□□□□ -0.63
CLIP1-219ENST00000620786 LNX2Q8N448 690 aa11.11□□□□□ -0.63
CLIP1-219ENST00000620786 OR5AK3PQ8NH89 298 aa11.11□□□□□ -0.63
CLIP1-219ENST00000620786 AGAP11Q8TF27 550 aa11.11□□□□□ -0.63
CLIP1-219ENST00000620786 KCNH6Q9H252 994 aa11.11□□□□□ -0.63
CLIP1-219ENST00000620786 SIGLEC1Q9BZZ2 1709 aa11.11□□□□□ -0.63
CLIP1-219ENST00000620786 A0A1W2PP55 124 aa11.11□□□□□ -0.63
CLIP1-219ENST00000620786 ARHGEF33A8MVX0 844 aa11.11□□□□□ -0.63
CLIP1-219ENST00000620786 ADAMTS3O15072 1205 aa11.11□□□□□ -0.63
CLIP1-219ENST00000620786 GSC2O15499 205 aa11.11□□□□□ -0.63
CLIP1-219ENST00000620786 TNFRSF21O75509 655 aa11.11□□□□□ -0.63
CLIP1-219ENST00000620786 AGR2O95994 175 aa11.11□□□□□ -0.63
CLIP1-219ENST00000620786 HTRA3P83110 453 aa11.11□□□□□ -0.63
CLIP1-219ENST00000620786 DECR1Q16698 335 aa11.11□□□□□ -0.63
CLIP1-219ENST00000620786 C12orf40Q86WS4 652 aa11.11□□□□□ -0.63
CLIP1-219ENST00000620786 CCDC54Q8NEL0 328 aa11.11□□□□□ -0.63
CLIP1-219ENST00000620786 PMM1Q92871 262 aa11.11□□□□□ -0.63
CLIP1-219ENST00000620786 ROPN1LQ96C74 230 aa11.11□□□□□ -0.63
CLIP1-219ENST00000620786 COQ8BQ96D53 544 aa11.11□□□□□ -0.63
CLIP1-219ENST00000620786 ZDHHC12Q96GR4 267 aa11.11□□□□□ -0.63
CLIP1-219ENST00000620786 PIWIL1Q96J94 861 aaKnown RBP11.11□□□□□ -0.63
CLIP1-219ENST00000620786 GATA5Q9BWX5 397 aaPredicted RBP11.11□□□□□ -0.63
CLIP1-219ENST00000620786 P2RX2Q9UBL9 471 aa11.11□□□□□ -0.63
CLIP1-219ENST00000620786 TAF4O00268 1085 aa11.11□□□□□ -0.63
CLIP1-219ENST00000620786 AXIN1O15169 862 aa11.11□□□□□ -0.63
CLIP1-219ENST00000620786 RNGTTO60942 597 aaKnown RBP11.11□□□□□ -0.63
CLIP1-219ENST00000620786 LEFTY1O75610 366 aa11.11□□□□□ -0.63
CLIP1-219ENST00000620786 MT-ND1P03886 318 aa11.11□□□□□ -0.63
CLIP1-219ENST00000620786 RLN1P04808 185 aa11.11□□□□□ -0.63
CLIP1-219ENST00000620786 PSMD7P51665 324 aa11.11□□□□□ -0.63
CLIP1-219ENST00000620786 GANABQ14697 944 aaKnown RBP11.11□□□□□ -0.63
CLIP1-219ENST00000620786 DENND5AQ6IQ26 1287 aa11.11□□□□□ -0.63
CLIP1-219ENST00000620786 SERINC5Q86VE9 423 aa11.11□□□□□ -0.63
CLIP1-219ENST00000620786 ELAC1Q9H777 363 aaKnown RBP11.11□□□□□ -0.63
CLIP1-219ENST00000620786 THUMPD1Q9NXG2 353 aaKnown RBP11.11□□□□□ -0.63
CLIP1-219ENST00000620786 MOCS1Q9NZB8 636 aa11.11□□□□□ -0.63
CLIP1-219ENST00000620786 PMM2O15305 246 aa11.11□□□□□ -0.63
CLIP1-219ENST00000620786 CNTN5O94779 1100 aa11.11□□□□□ -0.63
CLIP1-219ENST00000620786 AP2A2O94973 939 aa11.11□□□□□ -0.63
CLIP1-219ENST00000620786 IL33O95760 270 aa11.11□□□□□ -0.63
CLIP1-219ENST00000620786 SLC6A9P48067 706 aa11.11□□□□□ -0.63
CLIP1-219ENST00000620786 HADHBP55084 474 aaKnown RBP11.11□□□□□ -0.63
CLIP1-219ENST00000620786 MLLT6P55198 1093 aaPredicted RBP11.11□□□□□ -0.63
CLIP1-219ENST00000620786 PER3P56645 1201 aa11.11□□□□□ -0.63
CLIP1-219ENST00000620786 TARDBPQ13148 414 aaKnown RBP eCLIP11.11□□□□□ -0.63
CLIP1-219ENST00000620786 DPY19L1Q2PZI1 675 aa11.11□□□□□ -0.63
CLIP1-219ENST00000620786 SLC39A4Q6P5W5 647 aa11.11□□□□□ -0.63
CLIP1-219ENST00000620786 TRMT10BQ6PF06 316 aaKnown RBP11.11□□□□□ -0.63
CLIP1-219ENST00000620786 OLFML1Q6UWY5 402 aa11.11□□□□□ -0.63
CLIP1-219ENST00000620786 NECTIN4Q96NY8 510 aa11.11□□□□□ -0.63
CLIP1-219ENST00000620786 SRRM3A6NNA2 597 aaPredicted RBP11.11□□□□□ -0.63
CLIP1-219ENST00000620786 PRAMEF11O60813 436 aa11.11□□□□□ -0.63
CLIP1-219ENST00000620786 GJB5O95377 273 aa11.11□□□□□ -0.63
CLIP1-219ENST00000620786 F7P08709 466 aaPredicted RBP11.11□□□□□ -0.63
CLIP1-219ENST00000620786 ZNF20P17024 532 aa11.11□□□□□ -0.63
CLIP1-219ENST00000620786 CLCN4P51793 760 aa11.11□□□□□ -0.63
CLIP1-219ENST00000620786 ZNF41P51814 821 aaPredicted RBP11.11□□□□□ -0.63
CLIP1-219ENST00000620786 AP1S2P56377 157 aa11.11□□□□□ -0.63
CLIP1-219ENST00000620786 MTPNP58546 118 aa11.11□□□□□ -0.63
CLIP1-219ENST00000620786 ARF5P84085 180 aa11.11□□□□□ -0.63
CLIP1-219ENST00000620786 RASGEF1BQ0VAM2 473 aa11.11□□□□□ -0.63
CLIP1-219ENST00000620786 IL18Q14116 193 aa11.11□□□□□ -0.63
CLIP1-219ENST00000620786 KLHL6Q8WZ60 621 aa11.11□□□□□ -0.63
CLIP1-219ENST00000620786 TRIM2Q9C040 744 aa11.11□□□□□ -0.63
CLIP1-219ENST00000620786 Q9N2J8 555 aa11.11□□□□□ -0.63
CLIP1-219ENST00000620786 SQORQ9Y6N5 450 aa11.11□□□□□ -0.63
CLIP1-219ENST00000620786 RGS10O43665 173 aa11.1□□□□□ -0.63
CLIP1-219ENST00000620786 AKAP8O43823 692 aaKnown RBP11.1□□□□□ -0.63
CLIP1-219ENST00000620786 TULP3O75386 442 aa11.1□□□□□ -0.63
CLIP1-219ENST00000620786 SERPINA3P01011 423 aa11.1□□□□□ -0.63
CLIP1-219ENST00000620786 DSTNP60981 165 aa11.1□□□□□ -0.63
CLIP1-219ENST00000620786 C1orf52Q8N6N3 182 aaKnown RBP11.1□□□□□ -0.63
CLIP1-219ENST00000620786 ANKFN1Q8N957 763 aa11.1□□□□□ -0.63
CLIP1-219ENST00000620786 OR6K6Q8NGW6 343 aa11.1□□□□□ -0.63
CLIP1-219ENST00000620786 HERC2P3Q9BVR0 1158 aa11.1□□□□□ -0.63
CLIP1-219ENST00000620786 IFT46Q9NQC8 304 aa11.1□□□□□ -0.63
CLIP1-219ENST00000620786 SLC2A6Q9UGQ3 507 aa11.1□□□□□ -0.63
CLIP1-219ENST00000620786 NPIPA5E9PKD4 350 aa11.1□□□□□ -0.63
CLIP1-219ENST00000620786 ITGA3P26006 1051 aa11.1□□□□□ -0.63
CLIP1-219ENST00000620786 ZNF805Q5CZA5 627 aa11.1□□□□□ -0.63
CLIP1-219ENST00000620786 MFSD5Q6N075 450 aa11.1□□□□□ -0.63
CLIP1-219ENST00000620786 POC5Q8NA72 575 aa11.1□□□□□ -0.63
CLIP1-219ENST00000620786 SLC5A11Q8WWX8 675 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms