RNA–Protein interactions for RNA: ENST00000594806.5

TRIM28-204, Transcript of tripartite motif containing 28, humanhuman

TSL 5

Gene TRIM28, Length 861 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-204ENST00000594806 UBAP2Q5T6F2 1119 aaKnown RBP24.81■■□□□ 1.56
TRIM28-204ENST00000594806 FIGLAQ6QHK4 219 aa24.81■■□□□ 1.56
TRIM28-204ENST00000594806 SBSNQ6UWP8 590 aa24.81■■□□□ 1.56
TRIM28-204ENST00000594806 DTX1Q86Y01 620 aa24.81■■□□□ 1.56
TRIM28-204ENST00000594806 LRRC56Q8IYG6 542 aaPredicted RBP24.81■■□□□ 1.56
TRIM28-204ENST00000594806 UBXN10Q96LJ8 280 aa24.81■■□□□ 1.56
TRIM28-204ENST00000594806 PAFAH2Q99487 392 aa24.81■■□□□ 1.56
TRIM28-204ENST00000594806 UTP6Q9NYH9 597 aaKnown RBP24.81■■□□□ 1.56
TRIM28-204ENST00000594806 ANKMY1Q9P2S6 941 aa24.81■■□□□ 1.56
TRIM28-204ENST00000594806 SERTAD3Q9UJW9 196 aa24.81■■□□□ 1.56
TRIM28-204ENST00000594806 SRRM3A6NNA2 597 aaPredicted RBP24.8■■□□□ 1.56
TRIM28-204ENST00000594806 KRT38O76015 456 aa24.8■■□□□ 1.56
TRIM28-204ENST00000594806 CCDC166P0CW27 439 aa24.8■■□□□ 1.56
TRIM28-204ENST00000594806 MAGP20916 626 aa24.8■■□□□ 1.56
TRIM28-204ENST00000594806 PRDX1Q06830 199 aaKnown RBP24.8■■□□□ 1.56
TRIM28-204ENST00000594806 MROH9Q5TGP6 573 aa24.8■■□□□ 1.56
TRIM28-204ENST00000594806 CDHR3Q6ZTQ4 885 aa24.8■■□□□ 1.56
TRIM28-204ENST00000594806 RAPH1Q70E73 1250 aa24.8■■□□□ 1.56
TRIM28-204ENST00000594806 MRRFQ96E11 262 aaKnown RBP24.8■■□□□ 1.56
TRIM28-204ENST00000594806 KLHL25Q9H0H3 589 aa24.8■■□□□ 1.56
TRIM28-204ENST00000594806 CCDC177Q9NQR7 707 aaPredicted RBP24.8■■□□□ 1.56
TRIM28-204ENST00000594806 FETUBQ9UGM5 382 aa24.8■■□□□ 1.56
TRIM28-204ENST00000594806 HEATR5BQ9P2D3 2071 aa24.79■■□□□ 1.56
TRIM28-204ENST00000594806 CCDC189A1A4V9 331 aa24.79■■□□□ 1.56
TRIM28-204ENST00000594806 STK17BO94768 372 aa24.79■■□□□ 1.56
TRIM28-204ENST00000594806 MT-ND3P03897 115 aa24.79■■□□□ 1.56
TRIM28-204ENST00000594806 MYBL2P10244 700 aa24.79■■□□□ 1.56
TRIM28-204ENST00000594806 GRIA3P42263 894 aa24.79■■□□□ 1.56
TRIM28-204ENST00000594806 ATP1A2P50993 1020 aa24.79■■□□□ 1.56
TRIM28-204ENST00000594806 GPR19Q15760 415 aa24.79■■□□□ 1.56
TRIM28-204ENST00000594806 ZIC1Q15915 447 aa24.79■■□□□ 1.56
TRIM28-204ENST00000594806 PPP1R3AQ16821 1122 aa24.79■■□□□ 1.56
TRIM28-204ENST00000594806 ZC3H12BQ5HYM0 836 aaKnown RBP24.79■■□□□ 1.56
TRIM28-204ENST00000594806 LGSNQ5TDP6 509 aa24.79■■□□□ 1.56
TRIM28-204ENST00000594806 KIAA1614Q5VZ46 1190 aa24.79■■□□□ 1.56
TRIM28-204ENST00000594806 AGTRAPQ6RW13 159 aa24.79■■□□□ 1.56
TRIM28-204ENST00000594806 SUSD1Q6UWL2 747 aa24.79■■□□□ 1.56
TRIM28-204ENST00000594806 TBC1D1Q86TI0 1168 aaPredicted RBP24.79■■□□□ 1.56
TRIM28-204ENST00000594806 ZFAND4Q86XD8 727 aa24.79■■□□□ 1.56
TRIM28-204ENST00000594806 DNAJC22Q8N4W6 341 aa24.79■■□□□ 1.56
TRIM28-204ENST00000594806 N4BP2L2Q92802 583 aaPredicted RBP24.79■■□□□ 1.56
TRIM28-204ENST00000594806 FBXL8Q96CD0 374 aa24.79■■□□□ 1.56
TRIM28-204ENST00000594806 DCBLD2Q96PD2 775 aa24.79■■□□□ 1.56
TRIM28-204ENST00000594806 MIPEPQ99797 713 aa24.79■■□□□ 1.56
TRIM28-204ENST00000594806 MRPS30Q9NP92 439 aaKnown RBP24.79■■□□□ 1.56
TRIM28-204ENST00000594806 PILRAQ9UKJ1 303 aa24.79■■□□□ 1.56
TRIM28-204ENST00000594806 PLCL2Q9UPR0 1127 aa24.79■■□□□ 1.56
TRIM28-204ENST00000594806 ACOT9Q9Y305 439 aa24.79■■□□□ 1.56
TRIM28-204ENST00000594806 OARD1Q9Y530 152 aa24.79■■□□□ 1.56
TRIM28-204ENST00000594806 A0A087X1B8 175 aa24.78■■□□□ 1.56
TRIM28-204ENST00000594806 EXOC1LA0A1B0GW35 172 aa24.78■■□□□ 1.56
TRIM28-204ENST00000594806 CDC7O00311 574 aa24.78■■□□□ 1.56
TRIM28-204ENST00000594806 DLGAP3O95886 979 aa24.78■■□□□ 1.56
TRIM28-204ENST00000594806 SLC35E2BP0CK96 405 aa24.78■■□□□ 1.56
TRIM28-204ENST00000594806 HRH2P25021 359 aa24.78■■□□□ 1.56
TRIM28-204ENST00000594806 PSMB5P28074 263 aa24.78■■□□□ 1.56
TRIM28-204ENST00000594806 SERPINB8P50452 374 aa24.78■■□□□ 1.56
TRIM28-204ENST00000594806 TSTA3Q13630 321 aaPredicted RBP24.78■■□□□ 1.56
TRIM28-204ENST00000594806 CDKL4Q5MAI5 379 aa24.78■■□□□ 1.56
TRIM28-204ENST00000594806 ICE2Q659A1 982 aa24.78■■□□□ 1.56
TRIM28-204ENST00000594806 CCDC77Q9BR77 488 aa24.78■■□□□ 1.56
TRIM28-204ENST00000594806 ULBP3Q9BZM4 244 aa24.78■■□□□ 1.56
TRIM28-204ENST00000594806 NMRAL1Q9HBL8 299 aa24.78■■□□□ 1.56
TRIM28-204ENST00000594806 FAM60AQ9NP50 221 aa24.78■■□□□ 1.56
TRIM28-204ENST00000594806 TAC3Q9UHF0 121 aa24.78■■□□□ 1.56
TRIM28-204ENST00000594806 TLK1Q9UKI8 766 aa24.78■■□□□ 1.56
TRIM28-204ENST00000594806 SSUH2Q9Y2M2 353 aa24.78■■□□□ 1.56
TRIM28-204ENST00000594806 PCDHB3Q9Y5E6 796 aa24.78■■□□□ 1.56
TRIM28-204ENST00000594806 ANKRD11Q6UB99 2663 aaPredicted RBP24.78■■□□□ 1.56
TRIM28-204ENST00000594806 SPTBP11277 2137 aa24.77■■□□□ 1.56
TRIM28-204ENST00000594806 HMX2A2RU54 273 aa24.77■■□□□ 1.56
TRIM28-204ENST00000594806 NPEPPSL1A6NEC2 478 aa24.77■■□□□ 1.56
TRIM28-204ENST00000594806 TMEM150CB9EJG8 249 aa24.77■■□□□ 1.56
TRIM28-204ENST00000594806 POC1B-GALNT4F8VUJ3 575 aa24.77■■□□□ 1.56
TRIM28-204ENST00000594806 ANXA5P08758 320 aa24.77■■□□□ 1.56
TRIM28-204ENST00000594806 CD1DP15813 335 aa24.77■■□□□ 1.56
TRIM28-204ENST00000594806 GABRA4P48169 554 aa24.77■■□□□ 1.56
TRIM28-204ENST00000594806 HNMTP50135 292 aa24.77■■□□□ 1.56
TRIM28-204ENST00000594806 CSRP3P50461 194 aa24.77■■□□□ 1.56
TRIM28-204ENST00000594806 ITGA1P56199 1179 aa24.77■■□□□ 1.56
TRIM28-204ENST00000594806 RELAQ04206 551 aa24.77■■□□□ 1.56
TRIM28-204ENST00000594806 CLN3Q13286 438 aa24.77■■□□□ 1.56
TRIM28-204ENST00000594806 CSHL1Q14406 222 aa24.77■■□□□ 1.56
TRIM28-204ENST00000594806 SLC29A2Q14542 456 aa24.77■■□□□ 1.56
TRIM28-204ENST00000594806 TAF1BQ53T94 588 aaPredicted RBP24.77■■□□□ 1.56
TRIM28-204ENST00000594806 THEMIS2Q5TEJ8 643 aa24.77■■□□□ 1.56
TRIM28-204ENST00000594806 BROXQ5VW32 411 aa24.77■■□□□ 1.56
TRIM28-204ENST00000594806 CAPN13Q6MZZ7 669 aaPredicted RBP24.77■■□□□ 1.56
TRIM28-204ENST00000594806 WDR93Q6P2C0 686 aa24.77■■□□□ 1.56
TRIM28-204ENST00000594806 FRA10AC1Q70Z53 315 aa24.77■■□□□ 1.56
TRIM28-204ENST00000594806 CMC1Q7Z7K0 106 aa24.77■■□□□ 1.56
TRIM28-204ENST00000594806 SPACA3Q8IXA5 215 aa24.77■■□□□ 1.56
TRIM28-204ENST00000594806 GSPT2Q8IYD1 628 aaKnown RBP24.77■■□□□ 1.56
TRIM28-204ENST00000594806 GPR135Q8IZ08 494 aa24.77■■□□□ 1.56
TRIM28-204ENST00000594806 NLGN4XQ8N0W4 816 aa24.77■■□□□ 1.56
TRIM28-204ENST00000594806 ESX1Q8N693 406 aa24.77■■□□□ 1.56
TRIM28-204ENST00000594806 PPFIBP2Q8ND30 876 aa24.77■■□□□ 1.56
TRIM28-204ENST00000594806 NLGN4YQ8NFZ3 816 aaPredicted RBP24.77■■□□□ 1.56
TRIM28-204ENST00000594806 IKZF3Q9UKT9 509 aa24.77■■□□□ 1.56
TRIM28-204ENST00000594806 ASPMQ8IZT6 3477 aa24.77■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms