RNA–Protein interactions for RNA: ENST00000583344.1

SMCHD1-208, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 738 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-208ENST00000583344 PPIGQ13427 754 aaKnown RBP eCLIP3.85□□□□□ -1.79
SMCHD1-208ENST00000583344 TDGQ13569 410 aa3.85□□□□□ -1.79
SMCHD1-208ENST00000583344 RPS6KA1Q15418 735 aa3.85□□□□□ -1.79
SMCHD1-208ENST00000583344 C2orf68Q2NKX9 166 aa3.85□□□□□ -1.79
SMCHD1-208ENST00000583344 CCDC40Q4G0X9 1142 aa3.85□□□□□ -1.79
SMCHD1-208ENST00000583344 TNFAIP8L3Q5GJ75 292 aa3.85□□□□□ -1.79
SMCHD1-208ENST00000583344 SIRPB2Q5JXA9 342 aa3.85□□□□□ -1.79
SMCHD1-208ENST00000583344 PDSS1Q5T2R2 415 aa3.85□□□□□ -1.79
SMCHD1-208ENST00000583344 TRNP1Q6NT89 227 aa3.85□□□□□ -1.79
SMCHD1-208ENST00000583344 SLC30A6Q6NXT4 461 aa3.85□□□□□ -1.79
SMCHD1-208ENST00000583344 KCTD18Q6PI47 426 aaPredicted RBP3.85□□□□□ -1.79
SMCHD1-208ENST00000583344 CEACAM20Q6UY09 585 aa3.85□□□□□ -1.79
SMCHD1-208ENST00000583344 C15orf52Q6ZUT6 534 aaKnown RBP3.85□□□□□ -1.79
SMCHD1-208ENST00000583344 CACNA2D4Q7Z3S7 1137 aa3.85□□□□□ -1.79
SMCHD1-208ENST00000583344 PIGWQ7Z7B1 504 aa3.85□□□□□ -1.79
SMCHD1-208ENST00000583344 TDRPQ86YL5 185 aa3.85□□□□□ -1.79
SMCHD1-208ENST00000583344 MYOCDQ8IZQ8 938 aa3.85□□□□□ -1.79
SMCHD1-208ENST00000583344 ZNF444Q8N0Y2 327 aaPredicted RBP3.85□□□□□ -1.79
SMCHD1-208ENST00000583344 ZCCHC9Q8N567 271 aaKnown RBP3.85□□□□□ -1.79
SMCHD1-208ENST00000583344 ZBTB2Q8N680 514 aa3.85□□□□□ -1.79
SMCHD1-208ENST00000583344 CCDC26Q8TAB7 109 aa3.85□□□□□ -1.79
SMCHD1-208ENST00000583344 IFT81Q8WYA0 676 aa3.85□□□□□ -1.79
SMCHD1-208ENST00000583344 RAD54LQ92698 747 aa3.85□□□□□ -1.79
SMCHD1-208ENST00000583344 TAF4BQ92750 862 aa3.85□□□□□ -1.79
SMCHD1-208ENST00000583344 ZKSCAN4Q969J2 545 aaPredicted RBP3.85□□□□□ -1.79
SMCHD1-208ENST00000583344 TLCD1Q96CP7 247 aa3.85□□□□□ -1.79
SMCHD1-208ENST00000583344 LGALS12Q96DT0 336 aa3.85□□□□□ -1.79
SMCHD1-208ENST00000583344 ELP4Q96EB1 424 aa3.85□□□□□ -1.79
SMCHD1-208ENST00000583344 RNF125Q96EQ8 232 aa3.85□□□□□ -1.79
SMCHD1-208ENST00000583344 MS4A14Q96JA4 679 aa3.85□□□□□ -1.79
SMCHD1-208ENST00000583344 ZMAT2Q96NC0 199 aaKnown RBP3.85□□□□□ -1.79
SMCHD1-208ENST00000583344 KRT12Q99456 494 aa3.85□□□□□ -1.79
SMCHD1-208ENST00000583344 TMEM47Q9BQJ4 181 aa3.85□□□□□ -1.79
SMCHD1-208ENST00000583344 SYT17Q9BSW7 474 aa3.85□□□□□ -1.79
SMCHD1-208ENST00000583344 HEMGNQ9BXL5 484 aa3.85□□□□□ -1.79
SMCHD1-208ENST00000583344 RAB34Q9BZG1 259 aa3.85□□□□□ -1.79
SMCHD1-208ENST00000583344 ANKRD2Q9GZV1 360 aa3.85□□□□□ -1.79
SMCHD1-208ENST00000583344 SLC40A1Q9NP59 571 aa3.85□□□□□ -1.79
SMCHD1-208ENST00000583344 MMP25Q9NPA2 562 aa3.85□□□□□ -1.79
SMCHD1-208ENST00000583344 FAM114A2Q9NRY5 505 aa3.85□□□□□ -1.79
SMCHD1-208ENST00000583344 MRGBPQ9NV56 204 aa3.85□□□□□ -1.79
SMCHD1-208ENST00000583344 SUCLA2Q9P2R7 463 aaPredicted RBP3.85□□□□□ -1.79
SMCHD1-208ENST00000583344 LSM4Q9Y4Z0 139 aaKnown RBP3.85□□□□□ -1.79
SMCHD1-208ENST00000583344 ITGB4P16144 1822 aa3.85□□□□□ -1.79
SMCHD1-208ENST00000583344 BRWD3Q6RI45 1802 aa3.85□□□□□ -1.79
SMCHD1-208ENST00000583344 ATAD5Q96QE3 1844 aa3.85□□□□□ -1.79
SMCHD1-208ENST00000583344 CICQ96RK0 1608 aaPredicted RBP3.84□□□□□ -1.79
SMCHD1-208ENST00000583344 TNKS1BP1Q9C0C2 1729 aaKnown RBP3.84□□□□□ -1.79
SMCHD1-208ENST00000583344 KIAA1551Q9HCM1 1747 aa3.84□□□□□ -1.79
SMCHD1-208ENST00000583344 A0A1B0GUL6 1792 aa3.84□□□□□ -1.79
SMCHD1-208ENST00000583344 LAMB2P55268 1798 aa3.84□□□□□ -1.79
SMCHD1-208ENST00000583344 FRMD3A2A2Y4 597 aa3.84□□□□□ -1.79
SMCHD1-208ENST00000583344 GOLGA6L10A6NI86 522 aa3.84□□□□□ -1.79
SMCHD1-208ENST00000583344 H0YHG0 523 aa3.84□□□□□ -1.79
SMCHD1-208ENST00000583344 BUB1O43683 1085 aa3.84□□□□□ -1.79
SMCHD1-208ENST00000583344 TSPAN3O60637 253 aa3.84□□□□□ -1.79
SMCHD1-208ENST00000583344 DKC1O60832 514 aaKnown RBP eCLIP3.84□□□□□ -1.79
SMCHD1-208ENST00000583344 TMEM63AO94886 807 aa3.84□□□□□ -1.79
SMCHD1-208ENST00000583344 HEXAP06865 529 aa3.84□□□□□ -1.79
SMCHD1-208ENST00000583344 NUDT17P0C025 328 aa3.84□□□□□ -1.79
SMCHD1-208ENST00000583344 RNF224P0DH78 156 aa3.84□□□□□ -1.79
SMCHD1-208ENST00000583344 MAOAP21397 527 aa3.84□□□□□ -1.79
SMCHD1-208ENST00000583344 BDKRB2P30411 391 aa3.84□□□□□ -1.79
SMCHD1-208ENST00000583344 SHMT1P34896 483 aa3.84□□□□□ -1.79
SMCHD1-208ENST00000583344 CTNNA1P35221 906 aaKnown RBP3.84□□□□□ -1.79
SMCHD1-208ENST00000583344 RDXP35241 583 aaKnown RBP3.84□□□□□ -1.79
SMCHD1-208ENST00000583344 SLC1A4P43007 532 aa3.84□□□□□ -1.79
SMCHD1-208ENST00000583344 MATR3P43243 847 aaKnown RBP eCLIP3.84□□□□□ -1.79
SMCHD1-208ENST00000583344 HADHBP55084 474 aaKnown RBP3.84□□□□□ -1.79
SMCHD1-208ENST00000583344 POLR2FP61218 127 aaKnown RBP3.84□□□□□ -1.79
SMCHD1-208ENST00000583344 RPS8P62241 208 aaKnown RBP3.84□□□□□ -1.79
SMCHD1-208ENST00000583344 GSTO1P78417 241 aa3.84□□□□□ -1.79
SMCHD1-208ENST00000583344 ROR1Q01973 937 aa3.84□□□□□ -1.79
SMCHD1-208ENST00000583344 KHDRBS1Q07666 443 aaKnown RBP eCLIP3.84□□□□□ -1.79
SMCHD1-208ENST00000583344 KLHL30Q0D2K2 578 aa3.84□□□□□ -1.79
SMCHD1-208ENST00000583344 IFT88Q13099 833 aa3.84□□□□□ -1.79
SMCHD1-208ENST00000583344 ITIH4Q14624 930 aa3.84□□□□□ -1.79
SMCHD1-208ENST00000583344 CRYMQ14894 314 aa3.84□□□□□ -1.79
SMCHD1-208ENST00000583344 GPR68Q15743 365 aa3.84□□□□□ -1.79
SMCHD1-208ENST00000583344 UAP1Q16222 522 aaPredicted RBP3.84□□□□□ -1.79
SMCHD1-208ENST00000583344 NFIL3Q16649 462 aa3.84□□□□□ -1.79
SMCHD1-208ENST00000583344 TMEM266Q2M3C6 531 aa3.84□□□□□ -1.79
SMCHD1-208ENST00000583344 TCTN1Q2MV58 587 aa3.84□□□□□ -1.79
SMCHD1-208ENST00000583344 LETM2Q2VYF4 491 aa3.84□□□□□ -1.79
SMCHD1-208ENST00000583344 ANKRD20A8PQ5CZ79 823 aa3.84□□□□□ -1.79
SMCHD1-208ENST00000583344 ERMARDQ5T6L9 678 aa3.84□□□□□ -1.79
SMCHD1-208ENST00000583344 KRT79Q5XKE5 535 aa3.84□□□□□ -1.79
SMCHD1-208ENST00000583344 KCTD16Q68DU8 428 aa3.84□□□□□ -1.79
SMCHD1-208ENST00000583344 CCDC121Q6ZUS5 278 aa3.84□□□□□ -1.79
SMCHD1-208ENST00000583344 ASB18Q6ZVZ8 466 aa3.84□□□□□ -1.79
SMCHD1-208ENST00000583344 GET4Q7L5D6 327 aaPredicted RBP3.84□□□□□ -1.79
SMCHD1-208ENST00000583344 LINGO2Q7L985 606 aa3.84□□□□□ -1.79
SMCHD1-208ENST00000583344 R3HCC1LQ7Z5L2 792 aaKnown RBP3.84□□□□□ -1.79
SMCHD1-208ENST00000583344 CPLX4Q7Z7G2 160 aa3.84□□□□□ -1.79
SMCHD1-208ENST00000583344 ZSCAN2Q7Z7L9 614 aaPredicted RBP3.84□□□□□ -1.79
SMCHD1-208ENST00000583344 FAM228AQ86W67 206 aa3.84□□□□□ -1.79
SMCHD1-208ENST00000583344 ARMC8Q8IUR7 673 aa3.84□□□□□ -1.79
SMCHD1-208ENST00000583344 CCDC13Q8IYE1 715 aa3.84□□□□□ -1.79
SMCHD1-208ENST00000583344 SYCE1Q8N0S2 351 aa3.84□□□□□ -1.79
SMCHD1-208ENST00000583344 METTL13Q8N6R0 699 aa3.84□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms