RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 KLC4Q9NSK0 619 aa7.74□□□□□ -1.17
VPS39-213ENST00000570062 TRNAU1APQ9NX07 287 aaKnown RBP7.74□□□□□ -1.17
VPS39-213ENST00000570062 STOX2Q9P2F5 926 aaPredicted RBP7.74□□□□□ -1.17
VPS39-213ENST00000570062 SERGEFQ9UGK8 458 aa7.74□□□□□ -1.17
VPS39-213ENST00000570062 EBF1Q9UH73 591 aa7.74□□□□□ -1.17
VPS39-213ENST00000570062 NDRG2Q9UN36 371 aaKnown RBP7.74□□□□□ -1.17
VPS39-213ENST00000570062 SLC22A14Q9Y267 594 aa7.74□□□□□ -1.17
VPS39-213ENST00000570062 WBP11Q9Y2W2 641 aaKnown RBP7.74□□□□□ -1.17
VPS39-213ENST00000570062 FIS1Q9Y3D6 152 aa7.74□□□□□ -1.17
VPS39-213ENST00000570062 GPSM3Q9Y4H4 160 aa7.74□□□□□ -1.17
VPS39-213ENST00000570062 ST14Q9Y5Y6 855 aa7.74□□□□□ -1.17
VPS39-213ENST00000570062 MUC6Q6W4X9 2439 aa7.74□□□□□ -1.17
VPS39-213ENST00000570062 DENND4AQ7Z401 1863 aa7.74□□□□□ -1.17
VPS39-213ENST00000570062 DOCK6Q96HP0 2047 aa7.74□□□□□ -1.17
VPS39-213ENST00000570062 MUC22E2RYF6 1773 aaPredicted RBP7.74□□□□□ -1.17
VPS39-213ENST00000570062 KIAA1549LQ6ZVL6 1849 aa7.73□□□□□ -1.17
VPS39-213ENST00000570062 ZNF106Q9H2Y7 1883 aaKnown RBP7.73□□□□□ -1.17
VPS39-213ENST00000570062 FAM170BA6NMN3 283 aa7.73□□□□□ -1.17
VPS39-213ENST00000570062 FOXE1O00358 373 aaPredicted RBP7.73□□□□□ -1.17
VPS39-213ENST00000570062 MANBAO00462 879 aa7.73□□□□□ -1.17
VPS39-213ENST00000570062 SLC31A1O15431 190 aa7.73□□□□□ -1.17
VPS39-213ENST00000570062 NARSO43776 548 aaKnown RBP7.73□□□□□ -1.17
VPS39-213ENST00000570062 PRMT3O60678 531 aa7.73□□□□□ -1.17
VPS39-213ENST00000570062 NDUFS2O75306 463 aa7.73□□□□□ -1.17
VPS39-213ENST00000570062 SLC22A3O75751 556 aa7.73□□□□□ -1.17
VPS39-213ENST00000570062 CCNDBP1O95273 360 aa7.73□□□□□ -1.17
VPS39-213ENST00000570062 FKBP9O95302 570 aa7.73□□□□□ -1.17
VPS39-213ENST00000570062 STAMBPO95630 424 aa7.73□□□□□ -1.17
VPS39-213ENST00000570062 SLC16A8O95907 504 aa7.73□□□□□ -1.17
VPS39-213ENST00000570062 TNFP01375 233 aa7.73□□□□□ -1.17
VPS39-213ENST00000570062 LINC00032P0C843 101 aa7.73□□□□□ -1.17
VPS39-213ENST00000570062 TSPAN8P19075 237 aa7.73□□□□□ -1.17
VPS39-213ENST00000570062 PBLDP30039 288 aaPredicted RBP7.73□□□□□ -1.17
VPS39-213ENST00000570062 CCR10P46092 362 aa7.73□□□□□ -1.17
VPS39-213ENST00000570062 PREPP48147 710 aa7.73□□□□□ -1.17
VPS39-213ENST00000570062 RAP1GDS1P52306 607 aa7.73□□□□□ -1.17
VPS39-213ENST00000570062 CLNS1AP54105 237 aaKnown RBP7.73□□□□□ -1.17
VPS39-213ENST00000570062 KCNK10P57789 538 aa7.73□□□□□ -1.17
VPS39-213ENST00000570062 RAB15P59190 212 aa7.73□□□□□ -1.17
VPS39-213ENST00000570062 ABATP80404 500 aa7.73□□□□□ -1.17
VPS39-213ENST00000570062 FOXM1Q08050 763 aa7.73□□□□□ -1.17
VPS39-213ENST00000570062 LRRC74AQ0VAA2 488 aa7.73□□□□□ -1.17
VPS39-213ENST00000570062 NAE1Q13564 534 aa7.73□□□□□ -1.17
VPS39-213ENST00000570062 UBAP2LQ14157 1087 aaKnown RBP7.73□□□□□ -1.17
VPS39-213ENST00000570062 FGL2Q14314 439 aa7.73□□□□□ -1.17
VPS39-213ENST00000570062 CYP2A13Q16696 494 aa7.73□□□□□ -1.17
VPS39-213ENST00000570062 UAP1L1Q3KQV9 507 aa7.73□□□□□ -1.17
VPS39-213ENST00000570062 C6orf136Q5SQH8 315 aa7.73□□□□□ -1.17
VPS39-213ENST00000570062 ZNF648Q5T619 568 aaPredicted RBP7.73□□□□□ -1.17
VPS39-213ENST00000570062 FRG2Q64ET8 278 aa7.73□□□□□ -1.17
VPS39-213ENST00000570062 ATG9BQ674R7 924 aa7.73□□□□□ -1.17
VPS39-213ENST00000570062 GRHL2Q6ISB3 625 aa7.73□□□□□ -1.17
VPS39-213ENST00000570062 LETMD1Q6P1Q0 360 aa7.73□□□□□ -1.17
VPS39-213ENST00000570062 DOK6Q6PKX4 331 aa7.73□□□□□ -1.17
VPS39-213ENST00000570062 CRTC3Q6UUV7 619 aa7.73□□□□□ -1.17
VPS39-213ENST00000570062 LCTLQ6UWM7 567 aa7.73□□□□□ -1.17
VPS39-213ENST00000570062 ABRAXAS1Q6UWZ7 409 aa7.73□□□□□ -1.17
VPS39-213ENST00000570062 C11orf74Q86VG3 221 aa7.73□□□□□ -1.17
VPS39-213ENST00000570062 IQCHQ86VS3 1027 aa7.73□□□□□ -1.17
VPS39-213ENST00000570062 LONP2Q86WA8 852 aa7.73□□□□□ -1.17
VPS39-213ENST00000570062 RBM12BQ8IXT5 1001 aaKnown RBP7.73□□□□□ -1.17
VPS39-213ENST00000570062 SDR16C5Q8N3Y7 309 aa7.73□□□□□ -1.17
VPS39-213ENST00000570062 FNDC5Q8NAU1 212 aa7.73□□□□□ -1.17
VPS39-213ENST00000570062 TTLQ8NG68 377 aa7.73□□□□□ -1.17
VPS39-213ENST00000570062 OR52B6Q8NGF0 335 aa7.73□□□□□ -1.17
VPS39-213ENST00000570062 HMGCLL1Q8TB92 370 aa7.73□□□□□ -1.17
VPS39-213ENST00000570062 SELENOMQ8WWX9 145 aa7.73□□□□□ -1.17
VPS39-213ENST00000570062 SLC22A18Q96BI1 424 aa7.73□□□□□ -1.17
VPS39-213ENST00000570062 CCDC97Q96F63 343 aaPredicted RBP7.73□□□□□ -1.17
VPS39-213ENST00000570062 CMTM7Q96FZ5 175 aa7.73□□□□□ -1.17
VPS39-213ENST00000570062 CATSPER2Q96P56 530 aa7.73□□□□□ -1.17
VPS39-213ENST00000570062 FRG2BQ96QU4 278 aa7.73□□□□□ -1.17
VPS39-213ENST00000570062 OR2M4Q96R27 311 aa7.73□□□□□ -1.17
VPS39-213ENST00000570062 SGPP1Q9BX95 441 aa7.73□□□□□ -1.17
VPS39-213ENST00000570062 FAM117AQ9C073 453 aa7.73□□□□□ -1.17
VPS39-213ENST00000570062 ZDHHC5Q9C0B5 715 aa7.73□□□□□ -1.17
VPS39-213ENST00000570062 BRINP2Q9C0B6 783 aa7.73□□□□□ -1.17
VPS39-213ENST00000570062 CHRDQ9H2X0 955 aa7.73□□□□□ -1.17
VPS39-213ENST00000570062 NT5DC2Q9H857 520 aa7.73□□□□□ -1.17
VPS39-213ENST00000570062 LTB4R2Q9NPC1 389 aa7.73□□□□□ -1.17
VPS39-213ENST00000570062 AIG1Q9NVV5 245 aa7.73□□□□□ -1.17
VPS39-213ENST00000570062 C1orf109Q9NX04 203 aa7.73□□□□□ -1.17
VPS39-213ENST00000570062 AHSPQ9NZD4 102 aa7.73□□□□□ -1.17
VPS39-213ENST00000570062 GULP1Q9UBP9 304 aa7.73□□□□□ -1.17
VPS39-213ENST00000570062 PCOLCE2Q9UKZ9 415 aa7.73□□□□□ -1.17
VPS39-213ENST00000570062 ZNF490Q9ULM2 529 aaPredicted RBP7.73□□□□□ -1.17
VPS39-213ENST00000570062 PPT2Q9UMR5 302 aa7.73□□□□□ -1.17
VPS39-213ENST00000570062 TMEM98Q9Y2Y6 226 aa7.73□□□□□ -1.17
VPS39-213ENST00000570062 PCDHGA2Q9Y5H1 932 aa7.73□□□□□ -1.17
VPS39-213ENST00000570062 COPG1Q9Y678 874 aaKnown RBP7.73□□□□□ -1.17
VPS39-213ENST00000570062 DGKBQ9Y6T7 804 aa7.73□□□□□ -1.17
VPS39-213ENST00000570062 C15orf38-AP3S2A0A0A6YYH1 394 aa7.72□□□□□ -1.17
VPS39-213ENST00000570062 CCDC163A0A0D9SF12 145 aa7.72□□□□□ -1.17
VPS39-213ENST00000570062 LOC100653049A0A140TA62 436 aa7.72□□□□□ -1.17
VPS39-213ENST00000570062 PRSS38A1L453 326 aa7.72□□□□□ -1.17
VPS39-213ENST00000570062 FAM234BA2RU67 622 aa7.72□□□□□ -1.17
VPS39-213ENST00000570062 LRRC14BA6NHZ5 514 aa7.72□□□□□ -1.17
VPS39-213ENST00000570062 TMEM233B4DJY2 109 aa7.72□□□□□ -1.17
VPS39-213ENST00000570062 C10orf142B7Z368 130 aa7.72□□□□□ -1.17
VPS39-213ENST00000570062 ANGPT2O15123 496 aa7.72□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 67.7 ms