RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, human

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-225	ENST00000566824	SLC6A20	Q9NP91	592 aa		18.83	■□□□□ 0.61
CLN3-225	ENST00000566824	FBXO8	Q9NRD0	319 aa		18.83	■□□□□ 0.61
CLN3-225	ENST00000566824	ZNF358	Q9NW07	568 aa		18.83	■□□□□ 0.61
CLN3-225	ENST00000566824	ARL15	Q9NXU5	204 aa		18.83	■□□□□ 0.61
CLN3-225	ENST00000566824	NOVA2	Q9UNW9	492 aa	Known RBP	18.83	■□□□□ 0.61
CLN3-225	ENST00000566824	ACOT9	Q9Y305	439 aa		18.83	■□□□□ 0.61
CLN3-225	ENST00000566824	IKBKG	Q9Y6K9	419 aa		18.83	■□□□□ 0.61
CLN3-225	ENST00000566824	USP24	Q9UPU5	2620 aa		18.83	■□□□□ 0.61
CLN3-225	ENST00000566824		A0A096LPK6	155 aa		18.82	■□□□□ 0.6
CLN3-225	ENST00000566824	IGKV1-8	A0A0C4DH67	115 aa		18.82	■□□□□ 0.6
CLN3-225	ENST00000566824	TYK2	P29597	1187 aa		18.82	■□□□□ 0.6
CLN3-225	ENST00000566824	GRIA3	P42263	894 aa		18.82	■□□□□ 0.6
CLN3-225	ENST00000566824	GABRA4	P48169	554 aa		18.82	■□□□□ 0.6
CLN3-225	ENST00000566824	ARL4D	P49703	201 aa		18.82	■□□□□ 0.6
CLN3-225	ENST00000566824	NAE1	Q13564	534 aa		18.82	■□□□□ 0.6
CLN3-225	ENST00000566824	DEFB110	Q30KQ9	67 aa		18.82	■□□□□ 0.6
CLN3-225	ENST00000566824	ZFAND4	Q86XD8	727 aa		18.82	■□□□□ 0.6
CLN3-225	ENST00000566824	CARF	Q8N187	725 aa		18.82	■□□□□ 0.6
CLN3-225	ENST00000566824	ZCCHC14	Q8WYQ9	949 aa	Known RBP	18.82	■□□□□ 0.6
CLN3-225	ENST00000566824	CAVIN3	Q969G5	261 aa		18.82	■□□□□ 0.6
CLN3-225	ENST00000566824	PYCR2	Q96C36	320 aa		18.82	■□□□□ 0.6
CLN3-225	ENST00000566824	GPR78	Q96P69	363 aa		18.82	■□□□□ 0.6
CLN3-225	ENST00000566824	VPS11	Q9H270	941 aa		18.82	■□□□□ 0.6
CLN3-225	ENST00000566824	CAMSAP3	Q9P1Y5	1249 aa	Predicted RBP	18.82	■□□□□ 0.6
CLN3-225	ENST00000566824	DKK4	Q9UBT3	224 aa		18.82	■□□□□ 0.6
CLN3-225	ENST00000566824	TAC3	Q9UHF0	121 aa		18.82	■□□□□ 0.6
CLN3-225	ENST00000566824	OARD1	Q9Y530	152 aa		18.82	■□□□□ 0.6
CLN3-225	ENST00000566824	MDC1	Q14676	2089 aa	Known RBP	18.82	■□□□□ 0.6
CLN3-225	ENST00000566824	RFPL1	O75677	317 aa		18.81	■□□□□ 0.6
CLN3-225	ENST00000566824	ENO2	P09104	434 aa	Predicted RBP	18.81	■□□□□ 0.6
CLN3-225	ENST00000566824	ZNF28	P17035	718 aa		18.81	■□□□□ 0.6
CLN3-225	ENST00000566824	TFEB	P19484	476 aa		18.81	■□□□□ 0.6
CLN3-225	ENST00000566824	RPA3	P35244	121 aa	Predicted RBP	18.81	■□□□□ 0.6
CLN3-225	ENST00000566824	HSD17B2	P37059	387 aa		18.81	■□□□□ 0.6
CLN3-225	ENST00000566824	SLCO1A2	P46721	670 aa		18.81	■□□□□ 0.6
CLN3-225	ENST00000566824	TBPL1	P62380	186 aa		18.81	■□□□□ 0.6
CLN3-225	ENST00000566824	TUBB3	Q13509	450 aa		18.81	■□□□□ 0.6
CLN3-225	ENST00000566824	FBXO48	Q5FWF7	155 aa		18.81	■□□□□ 0.6
CLN3-225	ENST00000566824	EMB	Q6PCB8	327 aa		18.81	■□□□□ 0.6
CLN3-225	ENST00000566824	FIGLA	Q6QHK4	219 aa		18.81	■□□□□ 0.6
CLN3-225	ENST00000566824	ISCA2	Q86U28	154 aa		18.81	■□□□□ 0.6
CLN3-225	ENST00000566824	LSMEM2	Q8N112	164 aa		18.81	■□□□□ 0.6
CLN3-225	ENST00000566824	CYP4X1	Q8N118	509 aa		18.81	■□□□□ 0.6
CLN3-225	ENST00000566824	EPS8L3	Q8TE67	593 aa	Known RBP	18.81	■□□□□ 0.6
CLN3-225	ENST00000566824	MZB1	Q8WU39	189 aa		18.81	■□□□□ 0.6
CLN3-225	ENST00000566824	KIAA1191	Q96A73	305 aa		18.81	■□□□□ 0.6
CLN3-225	ENST00000566824	SLC22A18	Q96BI1	424 aa		18.81	■□□□□ 0.6
CLN3-225	ENST00000566824	ALKBH8	Q96BT7	664 aa	Known RBP	18.81	■□□□□ 0.6
CLN3-225	ENST00000566824	FBXL8	Q96CD0	374 aa		18.81	■□□□□ 0.6
CLN3-225	ENST00000566824	ZNF501	Q96CX3	271 aa	Predicted RBP	18.81	■□□□□ 0.6
CLN3-225	ENST00000566824	ALG9	Q9H6U8	611 aa		18.81	■□□□□ 0.6
CLN3-225	ENST00000566824	SYNPO2L	Q9H987	977 aa		18.81	■□□□□ 0.6
CLN3-225	ENST00000566824	FGF21	Q9NSA1	209 aa		18.81	■□□□□ 0.6
CLN3-225	ENST00000566824	CUEDC1	Q9NWM3	386 aa	Predicted RBP	18.81	■□□□□ 0.6
CLN3-225	ENST00000566824	TBK1	Q9UHD2	729 aa		18.81	■□□□□ 0.6
CLN3-225	ENST00000566824	PCDHB11	Q9Y5F2	797 aa		18.81	■□□□□ 0.6
CLN3-225	ENST00000566824	PCDHGA7	Q9Y5G6	932 aa		18.81	■□□□□ 0.6
CLN3-225	ENST00000566824	PCDHGA3	Q9Y5H0	932 aa		18.81	■□□□□ 0.6
CLN3-225	ENST00000566824	URB1	O60287	2271 aa	Known RBP	18.81	■□□□□ 0.6
CLN3-225	ENST00000566824	CELSR3	Q9NYQ7	3312 aa		18.8	■□□□□ 0.6
CLN3-225	ENST00000566824		A0A087X1B8	175 aa		18.8	■□□□□ 0.6
CLN3-225	ENST00000566824	NCF1B	A6NI72	391 aa	Predicted RBP	18.8	■□□□□ 0.6
CLN3-225	ENST00000566824	NCF1C	A8MVU1	366 aa	Predicted RBP	18.8	■□□□□ 0.6
CLN3-225	ENST00000566824	POLR1C	O15160	346 aa	Predicted RBP	18.8	■□□□□ 0.6
CLN3-225	ENST00000566824	NVL	O15381	856 aa	Known RBP	18.8	■□□□□ 0.6
CLN3-225	ENST00000566824	CTSV	O60911	334 aa		18.8	■□□□□ 0.6
CLN3-225	ENST00000566824	KRT38	O76015	456 aa		18.8	■□□□□ 0.6
CLN3-225	ENST00000566824	SNRPA	P09012	282 aa	Known RBP	18.8	■□□□□ 0.6
CLN3-225	ENST00000566824	LTA4H	P09960	611 aa	Known RBP	18.8	■□□□□ 0.6
CLN3-225	ENST00000566824	HIST1H2AG	P0C0S8	130 aa	Predicted RBP	18.8	■□□□□ 0.6
CLN3-225	ENST00000566824	NCF1	P14598	390 aa	Predicted RBP	18.8	■□□□□ 0.6
CLN3-225	ENST00000566824	HIST1H2AD	P20671	130 aa		18.8	■□□□□ 0.6
CLN3-225	ENST00000566824	MLLT3	P42568	568 aa	Predicted RBP	18.8	■□□□□ 0.6
CLN3-225	ENST00000566824	GLRB	P48167	497 aa		18.8	■□□□□ 0.6
CLN3-225	ENST00000566824	AP1S2	P56377	157 aa		18.8	■□□□□ 0.6
CLN3-225	ENST00000566824	ERVPABLB-1	P60509	514 aa		18.8	■□□□□ 0.6
CLN3-225	ENST00000566824	ATP6V0D1	P61421	351 aa		18.8	■□□□□ 0.6
CLN3-225	ENST00000566824	PRAMEF17	Q5VTA0	474 aa		18.8	■□□□□ 0.6
CLN3-225	ENST00000566824	ICE2	Q659A1	982 aa		18.8	■□□□□ 0.6
CLN3-225	ENST00000566824	ADAMTSL2	Q86TH1	951 aa		18.8	■□□□□ 0.6
CLN3-225	ENST00000566824	TBC1D1	Q86TI0	1168 aa	Predicted RBP	18.8	■□□□□ 0.6
CLN3-225	ENST00000566824	DNAJC22	Q8N4W6	341 aa		18.8	■□□□□ 0.6
CLN3-225	ENST00000566824	OR1L3	Q8NH93	324 aa		18.8	■□□□□ 0.6
CLN3-225	ENST00000566824	MED8	Q96G25	268 aa		18.8	■□□□□ 0.6
CLN3-225	ENST00000566824	HIST1H2AH	Q96KK5	128 aa		18.8	■□□□□ 0.6
CLN3-225	ENST00000566824	ZNF578	Q96N58	590 aa	Predicted RBP	18.8	■□□□□ 0.6
CLN3-225	ENST00000566824	OR4K3	Q96R72	315 aa		18.8	■□□□□ 0.6
CLN3-225	ENST00000566824	HIST1H2AJ	Q99878	128 aa		18.8	■□□□□ 0.6
CLN3-225	ENST00000566824	H2AFJ	Q9BTM1	129 aa		18.8	■□□□□ 0.6
CLN3-225	ENST00000566824	DDA1	Q9BW61	102 aa		18.8	■□□□□ 0.6
CLN3-225	ENST00000566824	SGPP1	Q9BX95	441 aa		18.8	■□□□□ 0.6
CLN3-225	ENST00000566824	SPRY4	Q9C004	299 aa		18.8	■□□□□ 0.6
CLN3-225	ENST00000566824	PDE7B	Q9NP56	450 aa		18.8	■□□□□ 0.6
CLN3-225	ENST00000566824	THSD1	Q9NS62	852 aa		18.8	■□□□□ 0.6
CLN3-225	ENST00000566824	INTS7	Q9NVH2	962 aa	Known RBP	18.8	■□□□□ 0.6
CLN3-225	ENST00000566824	FETUB	Q9UGM5	382 aa		18.8	■□□□□ 0.6
CLN3-225	ENST00000566824	TLK1	Q9UKI8	766 aa		18.8	■□□□□ 0.6
CLN3-225	ENST00000566824	RAX	Q9Y2V3	346 aa		18.8	■□□□□ 0.6
CLN3-225	ENST00000566824	TEX51	A0A1B0GUA7	166 aa		18.79	■□□□□ 0.6
CLN3-225	ENST00000566824	SMIM23	A6NLE4	172 aa		18.79	■□□□□ 0.6

Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms