RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 SOCS6O14544 535 aa11.14□□□□□ -0.63
USP3-220ENST00000561381 DSCR3O14972 297 aa11.14□□□□□ -0.63
USP3-220ENST00000561381 C1orf105O95561 183 aa11.14□□□□□ -0.63
USP3-220ENST00000561381 ONECUT2O95948 504 aa11.14□□□□□ -0.63
USP3-220ENST00000561381 IGHEP01854 428 aa11.14□□□□□ -0.63
USP3-220ENST00000561381 RPN2P04844 631 aa11.14□□□□□ -0.63
USP3-220ENST00000561381 MMP11P24347 488 aa11.14□□□□□ -0.63
USP3-220ENST00000561381 ITGA3P26006 1051 aa11.14□□□□□ -0.63
USP3-220ENST00000561381 VARSP26640 1264 aaKnown RBP11.14□□□□□ -0.63
USP3-220ENST00000561381 ARNTP27540 789 aa11.14□□□□□ -0.63
USP3-220ENST00000561381 COL8A1P27658 744 aa11.14□□□□□ -0.63
USP3-220ENST00000561381 PPARGP37231 505 aaPredicted RBP11.14□□□□□ -0.63
USP3-220ENST00000561381 GLRBP48167 497 aa11.14□□□□□ -0.63
USP3-220ENST00000561381 ARSFP54793 590 aa11.14□□□□□ -0.63
USP3-220ENST00000561381 SOX8P57073 446 aa11.14□□□□□ -0.63
USP3-220ENST00000561381 VSX2P58304 361 aaPredicted RBP11.14□□□□□ -0.63
USP3-220ENST00000561381 AIMP2Q13155 320 aaKnown RBP11.14□□□□□ -0.63
USP3-220ENST00000561381 TMED2Q15363 201 aa11.14□□□□□ -0.63
USP3-220ENST00000561381 NKG7Q16617 165 aa11.14□□□□□ -0.63
USP3-220ENST00000561381 HIF1AQ16665 826 aa11.14□□□□□ -0.63
USP3-220ENST00000561381 ZC3H12BQ5HYM0 836 aaKnown RBP11.14□□□□□ -0.63
USP3-220ENST00000561381 PCID2Q5JVF3 399 aa11.14□□□□□ -0.63
USP3-220ENST00000561381 CTSL3PQ5NE16 218 aa11.14□□□□□ -0.63
USP3-220ENST00000561381 FRMPD2BQ6IN97 320 aa11.14□□□□□ -0.63
USP3-220ENST00000561381 KIRREL2Q6UWL6 708 aa11.14□□□□□ -0.63
USP3-220ENST00000561381 CES3Q6UWW8 571 aa11.14□□□□□ -0.63
USP3-220ENST00000561381 Q6ZS92 163 aa11.14□□□□□ -0.63
USP3-220ENST00000561381 TXLNBQ8N3L3 684 aa11.14□□□□□ -0.63
USP3-220ENST00000561381 ZADH2Q8N4Q0 377 aa11.14□□□□□ -0.63
USP3-220ENST00000561381 RNF10Q8N5U6 811 aaKnown RBP11.14□□□□□ -0.63
USP3-220ENST00000561381 DENND1AQ8TEH3 1009 aa11.14□□□□□ -0.63
USP3-220ENST00000561381 SKA2Q8WVK7 121 aaPredicted RBP11.14□□□□□ -0.63
USP3-220ENST00000561381 PEX13Q92968 403 aa11.14□□□□□ -0.63
USP3-220ENST00000561381 FKBP10Q96AY3 582 aa11.14□□□□□ -0.63
USP3-220ENST00000561381 ZNF285Q96NJ3 590 aa11.14□□□□□ -0.63
USP3-220ENST00000561381 MIPEPQ99797 713 aa11.14□□□□□ -0.63
USP3-220ENST00000561381 SELENOSQ9BQE4 189 aa11.14□□□□□ -0.63
USP3-220ENST00000561381 INTS7Q9NVH2 962 aaKnown RBP11.14□□□□□ -0.63
USP3-220ENST00000561381 ANAPC5Q9UJX4 755 aa11.14□□□□□ -0.63
USP3-220ENST00000561381 HS3ST3B1Q9Y662 390 aa11.14□□□□□ -0.63
USP3-220ENST00000561381 NUP210LQ5VU65 1888 aa11.14□□□□□ -0.63
USP3-220ENST00000561381 NOTCH2Q04721 2471 aa11.13□□□□□ -0.63
USP3-220ENST00000561381 CACNA1DQ01668 2161 aa11.13□□□□□ -0.63
USP3-220ENST00000561381 LOC105369274A0A096LPK9 316 aa11.13□□□□□ -0.63
USP3-220ENST00000561381 LOC102723532A0A0G2JNH3 316 aa11.13□□□□□ -0.63
USP3-220ENST00000561381 A0A1W2PPV9 198 aa11.13□□□□□ -0.63
USP3-220ENST00000561381 FITM1A5D6W6 292 aa11.13□□□□□ -0.63
USP3-220ENST00000561381 GOLGA8KD6RF30 607 aa11.13□□□□□ -0.63
USP3-220ENST00000561381 GOLGA8TH3BQL2 631 aa11.13□□□□□ -0.63
USP3-220ENST00000561381 NDUFS3O75489 264 aa11.13□□□□□ -0.63
USP3-220ENST00000561381 IPO13O94829 963 aaKnown RBP11.13□□□□□ -0.63
USP3-220ENST00000561381 MGAT1P26572 445 aa11.13□□□□□ -0.63
USP3-220ENST00000561381 TTPAP49638 278 aa11.13□□□□□ -0.63
USP3-220ENST00000561381 EIF3BP55884 814 aaKnown RBP11.13□□□□□ -0.63
USP3-220ENST00000561381 BASP1P80723 227 aaKnown RBP11.13□□□□□ -0.63
USP3-220ENST00000561381 FASTKQ14296 549 aaKnown RBP11.13□□□□□ -0.63
USP3-220ENST00000561381 GRM7Q14831 915 aa11.13□□□□□ -0.63
USP3-220ENST00000561381 WASHC2DQ5SRD0 308 aa11.13□□□□□ -0.63
USP3-220ENST00000561381 PRAMEF13Q5VWM6 474 aa11.13□□□□□ -0.63
USP3-220ENST00000561381 CNSTQ6PJW8 725 aa11.13□□□□□ -0.63
USP3-220ENST00000561381 OTOAQ7RTW8 1153 aa11.13□□□□□ -0.63
USP3-220ENST00000561381 PARP9Q8IXQ6 854 aa11.13□□□□□ -0.63
USP3-220ENST00000561381 OR4N4Q8N0Y3 316 aa11.13□□□□□ -0.63
USP3-220ENST00000561381 FAM136AQ96C01 138 aa11.13□□□□□ -0.63
USP3-220ENST00000561381 MFSD3Q96ES6 412 aa11.13□□□□□ -0.63
USP3-220ENST00000561381 PANX3Q96QZ0 392 aa11.13□□□□□ -0.63
USP3-220ENST00000561381 WDR54Q9H977 334 aa11.13□□□□□ -0.63
USP3-220ENST00000561381 EIF2B3Q9NR50 452 aaKnown RBP11.13□□□□□ -0.63
USP3-220ENST00000561381 GNPTGQ9UJJ9 305 aa11.13□□□□□ -0.63
USP3-220ENST00000561381 COPG1Q9Y678 874 aaKnown RBP11.13□□□□□ -0.63
USP3-220ENST00000561381 A0A0J9YVX5 310 aa11.12□□□□□ -0.63
USP3-220ENST00000561381 TCRBV7S3A2A0A539 114 aa11.12□□□□□ -0.63
USP3-220ENST00000561381 ANKUB1A6NFN9 424 aa11.12□□□□□ -0.63
USP3-220ENST00000561381 WIPF3A6NGB9 483 aa11.12□□□□□ -0.63
USP3-220ENST00000561381 TARM1B6A8C7 271 aa11.12□□□□□ -0.63
USP3-220ENST00000561381 NIPSNAP2O75323 286 aa11.12□□□□□ -0.63
USP3-220ENST00000561381 VAPBO95292 243 aa11.12□□□□□ -0.63
USP3-220ENST00000561381 CLDN1O95832 211 aa11.12□□□□□ -0.63
USP3-220ENST00000561381 LDLRP01130 860 aa11.12□□□□□ -0.63
USP3-220ENST00000561381 ALBP02768 609 aa11.12□□□□□ -0.63
USP3-220ENST00000561381 PIM1P11309 404 aaPredicted RBP11.12□□□□□ -0.63
USP3-220ENST00000561381 RPS3P23396 243 aaKnown RBP eCLIP11.12□□□□□ -0.63
USP3-220ENST00000561381 FMO4P31512 558 aa11.12□□□□□ -0.63
USP3-220ENST00000561381 KCNJ1P48048 391 aa11.12□□□□□ -0.63
USP3-220ENST00000561381 TERF1P54274 439 aa11.12□□□□□ -0.63
USP3-220ENST00000561381 Q0VFX4 171 aa11.12□□□□□ -0.63
USP3-220ENST00000561381 RPS6KA1Q15418 735 aa11.12□□□□□ -0.63
USP3-220ENST00000561381 CCNG2Q16589 344 aa11.12□□□□□ -0.63
USP3-220ENST00000561381 TCTE1Q5JU00 501 aa11.12□□□□□ -0.63
USP3-220ENST00000561381 MEI1Q5TIA1 1274 aa11.12□□□□□ -0.63
USP3-220ENST00000561381 YOD1Q5VVQ6 348 aaPredicted RBP11.12□□□□□ -0.63
USP3-220ENST00000561381 TTC23LQ6PF05 361 aa11.12□□□□□ -0.63
USP3-220ENST00000561381 PRSS58Q8IYP2 241 aa11.12□□□□□ -0.63
USP3-220ENST00000561381 OTUD6BQ8N6M0 293 aa11.12□□□□□ -0.63
USP3-220ENST00000561381 TTC29Q8NA56 475 aaPredicted RBP11.12□□□□□ -0.63
USP3-220ENST00000561381 OR2L3Q8NG85 312 aa11.12□□□□□ -0.63
USP3-220ENST00000561381 OR2A1Q8NGT9 310 aa11.12□□□□□ -0.63
USP3-220ENST00000561381 GSDMBQ8TAX9 411 aa11.12□□□□□ -0.63
USP3-220ENST00000561381 TM9SF4Q92544 642 aa11.12□□□□□ -0.63
USP3-220ENST00000561381 ZUFSPQ96AP4 578 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms