RNA–Protein interactions for RNA: ENST00000560445.1

TPM1-223, Transcript of tropomyosin 1, human

TSL 3 BASIC

Gene TPM1, Length 485 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM1-223	ENST00000560445	ABAT	P80404	500 aa		13.51	□□□□□ -0.25
TPM1-223	ENST00000560445	CHAF1B	Q13112	559 aa		13.51	□□□□□ -0.25
TPM1-223	ENST00000560445	AIMP2	Q13155	320 aa	Known RBP	13.51	□□□□□ -0.25
TPM1-223	ENST00000560445	GRB7	Q14451	532 aa		13.51	□□□□□ -0.25
TPM1-223	ENST00000560445	PPP1R7	Q15435	360 aa		13.51	□□□□□ -0.25
TPM1-223	ENST00000560445	TRIP13	Q15645	432 aa	Predicted RBP	13.51	□□□□□ -0.25
TPM1-223	ENST00000560445	LONRF1	Q17RB8	773 aa		13.51	□□□□□ -0.25
TPM1-223	ENST00000560445	MUM1	Q2TAK8	710 aa		13.51	□□□□□ -0.25
TPM1-223	ENST00000560445	CTSL3P	Q5NE16	218 aa		13.51	□□□□□ -0.25
TPM1-223	ENST00000560445	DCAF10	Q5QP82	559 aa		13.51	□□□□□ -0.25
TPM1-223	ENST00000560445	LCN10	Q6JVE6	187 aa		13.51	□□□□□ -0.25
TPM1-223	ENST00000560445	MRPL14	Q6P1L8	145 aa	Known RBP	13.51	□□□□□ -0.25
TPM1-223	ENST00000560445	TTLL10	Q6ZVT0	673 aa		13.51	□□□□□ -0.25
TPM1-223	ENST00000560445	TAX1BP1	Q86VP1	789 aa		13.51	□□□□□ -0.25
TPM1-223	ENST00000560445	PPIL6	Q8IXY8	311 aa		13.51	□□□□□ -0.25
TPM1-223	ENST00000560445	FAM26E	Q8N5C1	309 aa		13.51	□□□□□ -0.25
TPM1-223	ENST00000560445	FBXO15	Q8NCQ5	510 aa	Predicted RBP	13.51	□□□□□ -0.25
TPM1-223	ENST00000560445	OR2L3	Q8NG85	312 aa		13.51	□□□□□ -0.25
TPM1-223	ENST00000560445	OR9A1P	Q8NGU1	263 aa		13.51	□□□□□ -0.25
TPM1-223	ENST00000560445	ACTRT1	Q8TDG2	376 aa		13.51	□□□□□ -0.25
TPM1-223	ENST00000560445	PNPLA2	Q96AD5	504 aa		13.51	□□□□□ -0.25
TPM1-223	ENST00000560445	SMAD5	Q99717	465 aa	Known RBP	13.51	□□□□□ -0.25
TPM1-223	ENST00000560445	SLC26A1	Q9H2B4	701 aa		13.51	□□□□□ -0.25
TPM1-223	ENST00000560445	ATP13A2	Q9NQ11	1180 aa		13.51	□□□□□ -0.25
TPM1-223	ENST00000560445	SEMA3G	Q9NS98	782 aa		13.51	□□□□□ -0.25
TPM1-223	ENST00000560445	P4HTM	Q9NXG6	502 aa		13.51	□□□□□ -0.25
TPM1-223	ENST00000560445	CRYL1	Q9Y2S2	319 aa		13.51	□□□□□ -0.25
TPM1-223	ENST00000560445	MAD1L1	Q9Y6D9	718 aa		13.51	□□□□□ -0.25
TPM1-223	ENST00000560445	PTPN13	Q12923	2485 aa		13.51	□□□□□ -0.25
TPM1-223	ENST00000560445	FITM1	A5D6W6	292 aa		13.5	□□□□□ -0.25
TPM1-223	ENST00000560445	MYO1C	O00159	1063 aa		13.5	□□□□□ -0.25
TPM1-223	ENST00000560445	ZNF185	O15231	689 aa		13.5	□□□□□ -0.25
TPM1-223	ENST00000560445	NIPSNAP2	O75323	286 aa		13.5	□□□□□ -0.25
TPM1-223	ENST00000560445	SNRNP200	O75643	2136 aa	Known RBP	13.5	□□□□□ -0.25
TPM1-223	ENST00000560445	TTC4	O95801	387 aa		13.5	□□□□□ -0.25
TPM1-223	ENST00000560445	NR1D1	P20393	614 aa		13.5	□□□□□ -0.25
TPM1-223	ENST00000560445	MMP11	P24347	488 aa		13.5	□□□□□ -0.25
TPM1-223	ENST00000560445	GRIA3	P42263	894 aa		13.5	□□□□□ -0.25
TPM1-223	ENST00000560445	BDKRB1	P46663	353 aa		13.5	□□□□□ -0.25
TPM1-223	ENST00000560445	OCA2	Q04671	838 aa		13.5	□□□□□ -0.25
TPM1-223	ENST00000560445	UBAP2L	Q14157	1087 aa	Known RBP	13.5	□□□□□ -0.25
TPM1-223	ENST00000560445	GBX1	Q14549	363 aa		13.5	□□□□□ -0.25
TPM1-223	ENST00000560445	MYBPC3	Q14896	1274 aa		13.5	□□□□□ -0.25
TPM1-223	ENST00000560445	OVCH1	Q7RTY7	1134 aa		13.5	□□□□□ -0.25
TPM1-223	ENST00000560445	FDCSP	Q8NFU4	85 aa		13.5	□□□□□ -0.25
TPM1-223	ENST00000560445	CPT1C	Q8TCG5	803 aa		13.5	□□□□□ -0.25
TPM1-223	ENST00000560445	RERG	Q96A58	199 aa	Predicted RBP	13.5	□□□□□ -0.25
TPM1-223	ENST00000560445	MVB12A	Q96EY5	273 aa		13.5	□□□□□ -0.25
TPM1-223	ENST00000560445	ZNF285	Q96NJ3	590 aa		13.5	□□□□□ -0.25
TPM1-223	ENST00000560445	RUNDC3B	Q96NL0	473 aa		13.5	□□□□□ -0.25
TPM1-223	ENST00000560445	SERPINB12	Q96P63	405 aa		13.5	□□□□□ -0.25
TPM1-223	ENST00000560445	IL17F	Q96PD4	163 aa		13.5	□□□□□ -0.25
TPM1-223	ENST00000560445	ZFYVE21	Q9BQ24	234 aa		13.5	□□□□□ -0.25
TPM1-223	ENST00000560445	CDC23	Q9UJX2	597 aa		13.5	□□□□□ -0.25
TPM1-223	ENST00000560445	AGPS	O00116	658 aa		13.49	□□□□□ -0.25
TPM1-223	ENST00000560445	SMAP	O00193	183 aa		13.49	□□□□□ -0.25
TPM1-223	ENST00000560445	NDC80	O14777	642 aa		13.49	□□□□□ -0.25
TPM1-223	ENST00000560445	ZBTB14	O43829	449 aa		13.49	□□□□□ -0.25
TPM1-223	ENST00000560445	PRICKLE3	O43900	615 aa	Predicted RBP	13.49	□□□□□ -0.25
TPM1-223	ENST00000560445	PSIP1	O75475	530 aa	Known RBP	13.49	□□□□□ -0.25
TPM1-223	ENST00000560445	MPC1L	P0DKB6	136 aa		13.49	□□□□□ -0.25
TPM1-223	ENST00000560445	ERG	P11308	486 aa		13.49	□□□□□ -0.25
TPM1-223	ENST00000560445	TCP1	P17987	556 aa	Known RBP	13.49	□□□□□ -0.25
TPM1-223	ENST00000560445	HRH2	P25021	359 aa		13.49	□□□□□ -0.25
TPM1-223	ENST00000560445	SKIV2L2	P42285	1042 aa	Known RBP	13.49	□□□□□ -0.25
TPM1-223	ENST00000560445	RGS4	P49798	205 aa		13.49	□□□□□ -0.25
TPM1-223	ENST00000560445	SOX8	P57073	446 aa		13.49	□□□□□ -0.25
TPM1-223	ENST00000560445	AP2B1	P63010	937 aa		13.49	□□□□□ -0.25
TPM1-223	ENST00000560445	RELA	Q04206	551 aa		13.49	□□□□□ -0.25
TPM1-223	ENST00000560445	CES3	Q6UWW8	571 aa		13.49	□□□□□ -0.25
TPM1-223	ENST00000560445	MICALCL	Q6ZW33	695 aa		13.49	□□□□□ -0.25
TPM1-223	ENST00000560445	RNF44	Q7L0R7	432 aa		13.49	□□□□□ -0.25
TPM1-223	ENST00000560445	CAND1	Q86VP6	1230 aa	Known RBP	13.49	□□□□□ -0.25
TPM1-223	ENST00000560445	PALM2	Q8IXS6	379 aa		13.49	□□□□□ -0.25
TPM1-223	ENST00000560445	IQCK	Q8N0W5	287 aa		13.49	□□□□□ -0.25
TPM1-223	ENST00000560445	GALNT16	Q8N428	558 aa		13.49	□□□□□ -0.25
TPM1-223	ENST00000560445	ZADH2	Q8N4Q0	377 aa		13.49	□□□□□ -0.25
TPM1-223	ENST00000560445	C2orf73	Q8N5S3	287 aa	Predicted RBP	13.49	□□□□□ -0.25
TPM1-223	ENST00000560445	SERBP1	Q8NC51	408 aa	Known RBP eCLIP	13.49	□□□□□ -0.25
TPM1-223	ENST00000560445	NRTN	Q99748	197 aa		13.49	□□□□□ -0.25
TPM1-223	ENST00000560445	MIPEP	Q99797	713 aa		13.49	□□□□□ -0.25
TPM1-223	ENST00000560445	PCBD2	Q9H0N5	130 aa		13.49	□□□□□ -0.25
TPM1-223	ENST00000560445	MRPS30	Q9NP92	439 aa	Known RBP	13.49	□□□□□ -0.25
TPM1-223	ENST00000560445	C20orf96	Q9NUD7	363 aa	Predicted RBP	13.49	□□□□□ -0.25
TPM1-223	ENST00000560445	NFS1	Q9Y697	457 aa		13.49	□□□□□ -0.25
TPM1-223	ENST00000560445	HECTD1	Q9ULT8	2610 aa		13.48	□□□□□ -0.25
TPM1-223	ENST00000560445	TCRBV7S3A2	A0A539	114 aa		13.48	□□□□□ -0.25
TPM1-223	ENST00000560445	HYKK	A2RU49	373 aa		13.48	□□□□□ -0.25
TPM1-223	ENST00000560445		A6NL46	340 aa		13.48	□□□□□ -0.25
TPM1-223	ENST00000560445	GOLGA8K	D6RF30	607 aa		13.48	□□□□□ -0.25
TPM1-223	ENST00000560445	GOLGA8T	H3BQL2	631 aa		13.48	□□□□□ -0.25
TPM1-223	ENST00000560445	AVIL	O75366	819 aa		13.48	□□□□□ -0.25
TPM1-223	ENST00000560445	PDGFA	P04085	211 aa		13.48	□□□□□ -0.25
TPM1-223	ENST00000560445	EZR	P15311	586 aa	Known RBP	13.48	□□□□□ -0.25
TPM1-223	ENST00000560445	PGAM1	P18669	254 aa		13.48	□□□□□ -0.25
TPM1-223	ENST00000560445	PNLIPRP1	P54315	467 aa		13.48	□□□□□ -0.25
TPM1-223	ENST00000560445	VSX2	P58304	361 aa	Predicted RBP	13.48	□□□□□ -0.25
TPM1-223	ENST00000560445	IGFBP7	Q16270	282 aa		13.48	□□□□□ -0.25
TPM1-223	ENST00000560445	RBBP7	Q16576	425 aa		13.48	□□□□□ -0.25
TPM1-223	ENST00000560445	KLHL38	Q2WGJ6	581 aa		13.48	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms