RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 EHD1Q9H4M9 534 aa12.29□□□□□ -0.44
USP3-213ENST00000559711 SUFUQ9UMX1 484 aa12.29□□□□□ -0.44
USP3-213ENST00000559711 PSMD13Q9UNM6 376 aa12.29□□□□□ -0.44
USP3-213ENST00000559711 POMPQ9Y244 141 aa12.29□□□□□ -0.44
USP3-213ENST00000559711 ATG2BQ96BY7 2078 aa12.29□□□□□ -0.44
USP3-213ENST00000559711 PRUNE2Q8WUY3 3088 aa12.29□□□□□ -0.44
USP3-213ENST00000559711 FPGTO14772 594 aa12.29□□□□□ -0.44
USP3-213ENST00000559711 ANGPT2O15123 496 aa12.29□□□□□ -0.44
USP3-213ENST00000559711 CFLARO15519 480 aa12.29□□□□□ -0.44
USP3-213ENST00000559711 PI15O43692 258 aa12.29□□□□□ -0.44
USP3-213ENST00000559711 SEC22BO75396 215 aa12.29□□□□□ -0.44
USP3-213ENST00000559711 SLC35G4P0C7Q5 338 aa12.29□□□□□ -0.44
USP3-213ENST00000559711 ACP5P13686 325 aa12.29□□□□□ -0.44
USP3-213ENST00000559711 ACPPP15309 386 aa12.29□□□□□ -0.44
USP3-213ENST00000559711 HNRNPA2B1P22626 353 aaKnown RBP12.29□□□□□ -0.44
USP3-213ENST00000559711 CLCNKAP51800 687 aa12.29□□□□□ -0.44
USP3-213ENST00000559711 POLR2JP52435 117 aaKnown RBP12.29□□□□□ -0.44
USP3-213ENST00000559711 KCNK10P57789 538 aa12.29□□□□□ -0.44
USP3-213ENST00000559711 RPL38P63173 70 aaKnown RBP12.29□□□□□ -0.44
USP3-213ENST00000559711 PRKCQQ04759 706 aa12.29□□□□□ -0.44
USP3-213ENST00000559711 PRKG2Q13237 762 aa12.29□□□□□ -0.44
USP3-213ENST00000559711 CEACAM7Q14002 265 aa12.29□□□□□ -0.44
USP3-213ENST00000559711 PUS10Q3MIT2 529 aaKnown RBP12.29□□□□□ -0.44
USP3-213ENST00000559711 HABP4Q5JVS0 413 aaKnown RBP12.29□□□□□ -0.44
USP3-213ENST00000559711 HMGB4Q8WW32 186 aa12.29□□□□□ -0.44
USP3-213ENST00000559711 NEIL2Q969S2 332 aa12.29□□□□□ -0.44
USP3-213ENST00000559711 CMTM7Q96FZ5 175 aa12.29□□□□□ -0.44
USP3-213ENST00000559711 GPATCH1Q9BRR8 931 aaKnown RBP12.29□□□□□ -0.44
USP3-213ENST00000559711 MENTQ9BUN1 341 aa12.29□□□□□ -0.44
USP3-213ENST00000559711 CROTQ9UKG9 612 aa12.29□□□□□ -0.44
USP3-213ENST00000559711 WDR37Q9Y2I8 494 aa12.29□□□□□ -0.44
USP3-213ENST00000559711 POLR3HQ9Y535 204 aaPredicted RBP12.29□□□□□ -0.44
USP3-213ENST00000559711 EEDO75530 441 aaKnown RBP12.28□□□□□ -0.44
USP3-213ENST00000559711 SORBS2O94875 1100 aaKnown RBP12.28□□□□□ -0.44
USP3-213ENST00000559711 APBB3O95704 486 aa12.28□□□□□ -0.44
USP3-213ENST00000559711 SEMA4FO95754 770 aa12.28□□□□□ -0.44
USP3-213ENST00000559711 HSD3B1P14060 373 aa12.28□□□□□ -0.44
USP3-213ENST00000559711 HSD3B2P26439 372 aa12.28□□□□□ -0.44
USP3-213ENST00000559711 RPL10P27635 214 aaKnown RBP12.28□□□□□ -0.44
USP3-213ENST00000559711 THOP1P52888 689 aa12.28□□□□□ -0.44
USP3-213ENST00000559711 CLDN2P57739 230 aa12.28□□□□□ -0.44
USP3-213ENST00000559711 CSTF3Q12996 717 aaKnown RBP12.28□□□□□ -0.44
USP3-213ENST00000559711 NFATC4Q14934 902 aa12.28□□□□□ -0.44
USP3-213ENST00000559711 TLR1Q15399 786 aa12.28□□□□□ -0.44
USP3-213ENST00000559711 CYP2A13Q16696 494 aa12.28□□□□□ -0.44
USP3-213ENST00000559711 C10orf62Q5T681 223 aaPredicted RBP12.28□□□□□ -0.44
USP3-213ENST00000559711 CACHD1Q5VU97 1274 aa12.28□□□□□ -0.44
USP3-213ENST00000559711 ATG9BQ674R7 924 aa12.28□□□□□ -0.44
USP3-213ENST00000559711 MINDY1Q8N5J2 469 aa12.28□□□□□ -0.44
USP3-213ENST00000559711 EFCAB3Q8N7B9 438 aa12.28□□□□□ -0.44
USP3-213ENST00000559711 METTL2AQ96IZ6 378 aaKnown RBP12.28□□□□□ -0.44
USP3-213ENST00000559711 INSM2Q96T92 566 aaPredicted RBP12.28□□□□□ -0.44
USP3-213ENST00000559711 MYOCQ99972 504 aa12.28□□□□□ -0.44
USP3-213ENST00000559711 HOPXQ9BPY8 73 aaPredicted RBP12.28□□□□□ -0.44
USP3-213ENST00000559711 TRIT1Q9H3H1 467 aaKnown RBP12.28□□□□□ -0.44
USP3-213ENST00000559711 LMAN1LQ9HAT1 526 aa12.28□□□□□ -0.44
USP3-213ENST00000559711 FGF22Q9HCT0 170 aa12.28□□□□□ -0.44
USP3-213ENST00000559711 MRPL40Q9NQ50 206 aaKnown RBP12.28□□□□□ -0.44
USP3-213ENST00000559711 CCDC177Q9NQR7 707 aaPredicted RBP12.28□□□□□ -0.44
USP3-213ENST00000559711 SPATA6Q9NWH7 488 aaPredicted RBP12.28□□□□□ -0.44
USP3-213ENST00000559711 SPATA7Q9P0W8 599 aa12.28□□□□□ -0.44
USP3-213ENST00000559711 TMEM181Q9P2C4 612 aa12.28□□□□□ -0.44
USP3-213ENST00000559711 NKX1-2Q9UD57 310 aaPredicted RBP12.28□□□□□ -0.44
USP3-213ENST00000559711 TMED5Q9Y3A6 229 aa12.28□□□□□ -0.44
USP3-213ENST00000559711 DYRK1BQ9Y463 629 aa12.28□□□□□ -0.44
USP3-213ENST00000559711 PCDHGA11Q9Y5H2 935 aa12.28□□□□□ -0.44
USP3-213ENST00000559711 HS3ST3A1Q9Y663 406 aa12.28□□□□□ -0.44
USP3-213ENST00000559711 PRSS38A1L453 326 aa12.27□□□□□ -0.45
USP3-213ENST00000559711 ASPDHA6ND91 283 aa12.27□□□□□ -0.45
USP3-213ENST00000559711 CCDC154A6NI56 674 aa12.27□□□□□ -0.45
USP3-213ENST00000559711 C9JVG2 144 aa12.27□□□□□ -0.45
USP3-213ENST00000559711 TOR1BO14657 336 aa12.27□□□□□ -0.45
USP3-213ENST00000559711 TNFRSF10CO14798 259 aa12.27□□□□□ -0.45
USP3-213ENST00000559711 PSMG1O95456 288 aa12.27□□□□□ -0.45
USP3-213ENST00000559711 C1GALT1C1LP0DN25 315 aa12.27□□□□□ -0.45
USP3-213ENST00000559711 IL9P15248 144 aa12.27□□□□□ -0.45
USP3-213ENST00000559711 FOSL2P15408 326 aa12.27□□□□□ -0.45
USP3-213ENST00000559711 IDSP22304 550 aa12.27□□□□□ -0.45
USP3-213ENST00000559711 ME2P23368 584 aa12.27□□□□□ -0.45
USP3-213ENST00000559711 CCR5P51681 352 aa12.27□□□□□ -0.45
USP3-213ENST00000559711 YPEL5P62699 121 aa12.27□□□□□ -0.45
USP3-213ENST00000559711 CTBSQ01459 385 aa12.27□□□□□ -0.45
USP3-213ENST00000559711 TFF2Q03403 129 aa12.27□□□□□ -0.45
USP3-213ENST00000559711 FZD5Q13467 585 aa12.27□□□□□ -0.45
USP3-213ENST00000559711 LRRC32Q14392 662 aa12.27□□□□□ -0.45
USP3-213ENST00000559711 USP39Q53GS9 565 aaKnown RBP12.27□□□□□ -0.45
USP3-213ENST00000559711 TMEM31Q5JXX7 168 aa12.27□□□□□ -0.45
USP3-213ENST00000559711 NXPE4Q6UWF7 544 aa12.27□□□□□ -0.45
USP3-213ENST00000559711 LCTLQ6UWM7 567 aa12.27□□□□□ -0.45
USP3-213ENST00000559711 Q7L0L9 218 aa12.27□□□□□ -0.45
USP3-213ENST00000559711 GLB1L3Q8NCI6 653 aaPredicted RBP12.27□□□□□ -0.45
USP3-213ENST00000559711 FLCNQ8NFG4 579 aa12.27□□□□□ -0.45
USP3-213ENST00000559711 OR7G3Q8NG95 312 aa12.27□□□□□ -0.45
USP3-213ENST00000559711 SLC45A3Q96JT2 553 aa12.27□□□□□ -0.45
USP3-213ENST00000559711 FCRL1Q96LA6 429 aa12.27□□□□□ -0.45
USP3-213ENST00000559711 EFCAB11Q9BUY7 163 aa12.27□□□□□ -0.45
USP3-213ENST00000559711 BRF2Q9HAW0 419 aa12.27□□□□□ -0.45
USP3-213ENST00000559711 SPAG4Q9NPE6 437 aa12.27□□□□□ -0.45
USP3-213ENST00000559711 GID8Q9NWU2 228 aa12.27□□□□□ -0.45
USP3-213ENST00000559711 KCNK6Q9Y257 313 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms