RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 PFKFB4Q16877 469 aa12.37□□□□□ -0.43
SHMT2-227ENST00000557269 TTMPQ5BVD1 217 aa12.37□□□□□ -0.43
SHMT2-227ENST00000557269 CDKL4Q5MAI5 379 aa12.37□□□□□ -0.43
SHMT2-227ENST00000557269 HES3Q5TGS1 186 aa12.37□□□□□ -0.43
SHMT2-227ENST00000557269 KIAA1614Q5VZ46 1190 aa12.37□□□□□ -0.43
SHMT2-227ENST00000557269 SULT1C3Q6IMI6 304 aa12.37□□□□□ -0.43
SHMT2-227ENST00000557269 SPESP1Q6UW49 350 aa12.37□□□□□ -0.43
SHMT2-227ENST00000557269 RBM44Q6ZP01 1051 aaKnown RBP12.37□□□□□ -0.43
SHMT2-227ENST00000557269 PLXDC1Q8IUK5 500 aa12.37□□□□□ -0.43
SHMT2-227ENST00000557269 RAB42Q8N4Z0 105 aa12.37□□□□□ -0.43
SHMT2-227ENST00000557269 RCBTB1Q8NDN9 531 aa12.37□□□□□ -0.43
SHMT2-227ENST00000557269 TCP10LQ8TDR4 215 aa12.37□□□□□ -0.43
SHMT2-227ENST00000557269 ADAMTS14Q8WXS8 1223 aa12.37□□□□□ -0.43
SHMT2-227ENST00000557269 CCDC74BQ96LY2 380 aa12.37□□□□□ -0.43
SHMT2-227ENST00000557269 MIPEPQ99797 713 aa12.37□□□□□ -0.43
SHMT2-227ENST00000557269 ZMYND15Q9H091 742 aa12.37□□□□□ -0.43
SHMT2-227ENST00000557269 ACSS2Q9NR19 701 aa12.37□□□□□ -0.43
SHMT2-227ENST00000557269 TAC3Q9UHF0 121 aa12.37□□□□□ -0.43
SHMT2-227ENST00000557269 GRID1Q9ULK0 1009 aa12.37□□□□□ -0.43
SHMT2-227ENST00000557269 PLLPQ9Y342 182 aa12.37□□□□□ -0.43
SHMT2-227ENST00000557269 ENTPD2Q9Y5L3 495 aa12.37□□□□□ -0.43
SHMT2-227ENST00000557269 ANKRD12Q6UB98 2062 aa12.37□□□□□ -0.43
SHMT2-227ENST00000557269 FAM149AA5PLN7 773 aa12.36□□□□□ -0.43
SHMT2-227ENST00000557269 PABPN1LA6NDY0 278 aaKnown RBP12.36□□□□□ -0.43
SHMT2-227ENST00000557269 GOLGA6L10A6NI86 522 aa12.36□□□□□ -0.43
SHMT2-227ENST00000557269 SLC9B1P1A6NJY1 282 aa12.36□□□□□ -0.43
SHMT2-227ENST00000557269 A8MT66 165 aa12.36□□□□□ -0.43
SHMT2-227ENST00000557269 NRP2O60462 931 aa12.36□□□□□ -0.43
SHMT2-227ENST00000557269 SIX3O95343 332 aaPredicted RBP12.36□□□□□ -0.43
SHMT2-227ENST00000557269 S100BP04271 92 aaPredicted RBP12.36□□□□□ -0.43
SHMT2-227ENST00000557269 THRAP10827 490 aa12.36□□□□□ -0.43
SHMT2-227ENST00000557269 GFAPP14136 432 aa12.36□□□□□ -0.43
SHMT2-227ENST00000557269 NPPBP16860 134 aa12.36□□□□□ -0.43
SHMT2-227ENST00000557269 HNMTP50135 292 aa12.36□□□□□ -0.43
SHMT2-227ENST00000557269 MAGOHP61326 146 aaKnown RBP12.36□□□□□ -0.43
SHMT2-227ENST00000557269 SETDB1Q15047 1291 aa12.36□□□□□ -0.43
SHMT2-227ENST00000557269 SF1Q15637 639 aaKnown RBP12.36□□□□□ -0.43
SHMT2-227ENST00000557269 ZIC1Q15915 447 aa12.36□□□□□ -0.43
SHMT2-227ENST00000557269 CLPPQ16740 277 aaPredicted RBP12.36□□□□□ -0.43
SHMT2-227ENST00000557269 AGBL2Q5U5Z8 902 aa12.36□□□□□ -0.43
SHMT2-227ENST00000557269 THOC6Q86W42 341 aaKnown RBP12.36□□□□□ -0.43
SHMT2-227ENST00000557269 KLHDC8AQ8IYD2 350 aa12.36□□□□□ -0.43
SHMT2-227ENST00000557269 FBXO39Q8N4B4 442 aa12.36□□□□□ -0.43
SHMT2-227ENST00000557269 CHCHD4Q8N4Q1 142 aa12.36□□□□□ -0.43
SHMT2-227ENST00000557269 PTGR2Q8N8N7 351 aaPredicted RBP12.36□□□□□ -0.43
SHMT2-227ENST00000557269 OR2L3Q8NG85 312 aa12.36□□□□□ -0.43
SHMT2-227ENST00000557269 WDR48Q8TAF3 677 aa12.36□□□□□ -0.43
SHMT2-227ENST00000557269 ATL1Q8WXF7 558 aa12.36□□□□□ -0.43
SHMT2-227ENST00000557269 PHF21BQ96EK2 531 aa12.36□□□□□ -0.43
SHMT2-227ENST00000557269 MOCOSQ96EN8 888 aa12.36□□□□□ -0.43
SHMT2-227ENST00000557269 ZDHHC12Q96GR4 267 aa12.36□□□□□ -0.43
SHMT2-227ENST00000557269 PITPNM3Q9BZ71 974 aa12.36□□□□□ -0.43
SHMT2-227ENST00000557269 SLC6A20Q9NP91 592 aa12.36□□□□□ -0.43
SHMT2-227ENST00000557269 CCDC177Q9NQR7 707 aaPredicted RBP12.36□□□□□ -0.43
SHMT2-227ENST00000557269 WWOXQ9NZC7 414 aa12.36□□□□□ -0.43
SHMT2-227ENST00000557269 SENP1Q9P0U3 644 aa12.36□□□□□ -0.43
SHMT2-227ENST00000557269 SLC22A14Q9Y267 594 aa12.36□□□□□ -0.43
SHMT2-227ENST00000557269 PCDHB11Q9Y5F2 797 aa12.36□□□□□ -0.43
SHMT2-227ENST00000557269 UNC13CQ8NB66 2214 aa12.35□□□□□ -0.43
SHMT2-227ENST00000557269 IGKV1-8A0A0C4DH67 115 aa12.35□□□□□ -0.43
SHMT2-227ENST00000557269 A0A1W2PNU3 283 aaPredicted RBP12.35□□□□□ -0.43
SHMT2-227ENST00000557269 PMS2P1A4D2B8 440 aa12.35□□□□□ -0.43
SHMT2-227ENST00000557269 ZNF839A8K0R7 811 aa12.35□□□□□ -0.43
SHMT2-227ENST00000557269 MATN2O00339 956 aa12.35□□□□□ -0.43
SHMT2-227ENST00000557269 PRAMEF4O60810 478 aa12.35□□□□□ -0.43
SHMT2-227ENST00000557269 CSO75390 466 aaKnown RBP12.35□□□□□ -0.43
SHMT2-227ENST00000557269 RASSF9O75901 435 aa12.35□□□□□ -0.43
SHMT2-227ENST00000557269 WDR47O94967 919 aa12.35□□□□□ -0.43
SHMT2-227ENST00000557269 CDK4P11802 303 aa12.35□□□□□ -0.43
SHMT2-227ENST00000557269 ST6GAL1P15907 406 aa12.35□□□□□ -0.43
SHMT2-227ENST00000557269 EPORP19235 508 aa12.35□□□□□ -0.43
SHMT2-227ENST00000557269 ID4P47928 161 aa12.35□□□□□ -0.43
SHMT2-227ENST00000557269 SEPHS1P49903 392 aa12.35□□□□□ -0.43
SHMT2-227ENST00000557269 ALDH18A1P54886 795 aaKnown RBP12.35□□□□□ -0.43
SHMT2-227ENST00000557269 INHBCP55103 352 aa12.35□□□□□ -0.43
SHMT2-227ENST00000557269 C16orf72Q14CZ0 275 aa12.35□□□□□ -0.43
SHMT2-227ENST00000557269 SLC5A12Q1EHB4 618 aa12.35□□□□□ -0.43
SHMT2-227ENST00000557269 ISXQ2M1V0 245 aa12.35□□□□□ -0.43
SHMT2-227ENST00000557269 CCDC153Q494R4 210 aa12.35□□□□□ -0.43
SHMT2-227ENST00000557269 PHF19Q5T6S3 580 aa12.35□□□□□ -0.43
SHMT2-227ENST00000557269 THEMIS2Q5TEJ8 643 aa12.35□□□□□ -0.43
SHMT2-227ENST00000557269 CACHD1Q5VU97 1274 aa12.35□□□□□ -0.43
SHMT2-227ENST00000557269 PRAMEF9Q5VWM5 478 aa12.35□□□□□ -0.43
SHMT2-227ENST00000557269 PRAMEF13Q5VWM6 474 aa12.35□□□□□ -0.43
SHMT2-227ENST00000557269 ICE2Q659A1 982 aa12.35□□□□□ -0.43
SHMT2-227ENST00000557269 CAPN13Q6MZZ7 669 aaPredicted RBP12.35□□□□□ -0.43
SHMT2-227ENST00000557269 ZYG11AQ6WRX3 759 aa12.35□□□□□ -0.43
SHMT2-227ENST00000557269 RPS27LQ71UM5 84 aaKnown RBP12.35□□□□□ -0.43
SHMT2-227ENST00000557269 ARHGAP22Q7Z5H3 698 aa12.35□□□□□ -0.43
SHMT2-227ENST00000557269 RAB44Q7Z6P3 723 aaPredicted RBP12.35□□□□□ -0.43
SHMT2-227ENST00000557269 DCBLD1Q8N8Z6 715 aa12.35□□□□□ -0.43
SHMT2-227ENST00000557269 ARMC2Q8NEN0 867 aa12.35□□□□□ -0.43
SHMT2-227ENST00000557269 UBTD2Q8WUN7 234 aa12.35□□□□□ -0.43
SHMT2-227ENST00000557269 ATP6V1G3Q96LB4 118 aa12.35□□□□□ -0.43
SHMT2-227ENST00000557269 FAM111AQ96PZ2 611 aa12.35□□□□□ -0.43
SHMT2-227ENST00000557269 TRAPPC9Q96Q05 1148 aa12.35□□□□□ -0.43
SHMT2-227ENST00000557269 CD244Q9BZW8 370 aa12.35□□□□□ -0.43
SHMT2-227ENST00000557269 SSU72Q9NP77 194 aaKnown RBP12.35□□□□□ -0.43
SHMT2-227ENST00000557269 CUEDC1Q9NWM3 386 aaPredicted RBP12.35□□□□□ -0.43
SHMT2-227ENST00000557269 SEMA5BQ9P283 1151 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms