RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 MICAL3Q7RTP6 2002 aa17.09■□□□□ 0.33
SYNE3-202ENST00000553340 SERPINA11Q86U17 422 aa17.09■□□□□ 0.33
SYNE3-202ENST00000553340 ZNF513Q8N8E2 541 aaPredicted RBP17.09■□□□□ 0.33
SYNE3-202ENST00000553340 UBTD2Q8WUN7 234 aa17.09■□□□□ 0.33
SYNE3-202ENST00000553340 HTRA1Q92743 480 aa17.09■□□□□ 0.33
SYNE3-202ENST00000553340 CCDC97Q96F63 343 aaPredicted RBP17.09■□□□□ 0.33
SYNE3-202ENST00000553340 TXNDC15Q96J42 360 aa17.09■□□□□ 0.33
SYNE3-202ENST00000553340 CTRCQ99895 268 aa17.09■□□□□ 0.33
SYNE3-202ENST00000553340 ACPTQ9BZG2 426 aa17.09■□□□□ 0.33
SYNE3-202ENST00000553340 SLCO3A1Q9UIG8 710 aa17.09■□□□□ 0.33
SYNE3-202ENST00000553340 RPS6KA6Q9UK32 745 aa17.09■□□□□ 0.33
SYNE3-202ENST00000553340 RBMX2Q9Y388 322 aaKnown RBP17.09■□□□□ 0.33
SYNE3-202ENST00000553340 SAMHD1Q9Y3Z3 626 aaKnown RBP17.09■□□□□ 0.33
SYNE3-202ENST00000553340 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP17.09■□□□□ 0.33
SYNE3-202ENST00000553340 TMEM189-UBE2V1I3L0A0 370 aa17.09■□□□□ 0.33
SYNE3-202ENST00000553340 TAF4O00268 1085 aa17.09■□□□□ 0.33
SYNE3-202ENST00000553340 INPPL1O15357 1258 aa17.09■□□□□ 0.33
SYNE3-202ENST00000553340 DUSP11O75319 330 aaKnown RBP17.09■□□□□ 0.33
SYNE3-202ENST00000553340 ARHGEF15O94989 841 aa17.09■□□□□ 0.33
SYNE3-202ENST00000553340 DIRAS1O95057 198 aa17.09■□□□□ 0.33
SYNE3-202ENST00000553340 CLDN9O95484 217 aa17.09■□□□□ 0.33
SYNE3-202ENST00000553340 EPHA2P29317 976 aa17.09■□□□□ 0.33
SYNE3-202ENST00000553340 HMGCLP35914 325 aa17.09■□□□□ 0.33
SYNE3-202ENST00000553340 CSNK2BP67870 215 aa17.09■□□□□ 0.33
SYNE3-202ENST00000553340 ZNF177Q13360 481 aaPredicted RBP17.09■□□□□ 0.33
SYNE3-202ENST00000553340 AKAP14Q86UN6 197 aa17.09■□□□□ 0.33
SYNE3-202ENST00000553340 RBFAQ8N0V3 343 aa17.09■□□□□ 0.33
SYNE3-202ENST00000553340 LKAAEAR1Q8TD35 194 aa17.09■□□□□ 0.33
SYNE3-202ENST00000553340 FCGR1BQ92637 280 aa17.09■□□□□ 0.33
SYNE3-202ENST00000553340 PYCR2Q96C36 320 aa17.09■□□□□ 0.33
SYNE3-202ENST00000553340 TSSK3Q96PN8 268 aa17.09■□□□□ 0.33
SYNE3-202ENST00000553340 MYOCQ99972 504 aa17.09■□□□□ 0.33
SYNE3-202ENST00000553340 UGT2A1Q9Y4X1 527 aa17.09■□□□□ 0.33
SYNE3-202ENST00000553340 SCN10AQ9Y5Y9 1956 aa17.09■□□□□ 0.33
SYNE3-202ENST00000553340 UGT2B10P36537 528 aa17.08■□□□□ 0.33
SYNE3-202ENST00000553340 DSC1Q08554 894 aa17.08■□□□□ 0.33
SYNE3-202ENST00000553340 CPSF6Q16630 551 aaKnown RBP eCLIP17.08■□□□□ 0.33
SYNE3-202ENST00000553340 ZNF551Q7Z340 670 aaPredicted RBP17.08■□□□□ 0.33
SYNE3-202ENST00000553340 SIGLEC11Q96RL6 698 aa17.08■□□□□ 0.33
SYNE3-202ENST00000553340 BOCQ9BWV1 1114 aa17.08■□□□□ 0.33
SYNE3-202ENST00000553340 VPS51Q9UID3 782 aa17.08■□□□□ 0.33
SYNE3-202ENST00000553340 POU2F3Q9UKI9 436 aa17.08■□□□□ 0.33
SYNE3-202ENST00000553340 PCDHB9Q9Y5E1 797 aa17.08■□□□□ 0.33
SYNE3-202ENST00000553340 AIREO43918 545 aa17.08■□□□□ 0.32
SYNE3-202ENST00000553340 STK16O75716 305 aa17.08■□□□□ 0.32
SYNE3-202ENST00000553340 RPP38P78345 283 aaKnown RBP17.08■□□□□ 0.32
SYNE3-202ENST00000553340 ATAD3BQ5T9A4 648 aa17.08■□□□□ 0.32
SYNE3-202ENST00000553340 ZCCHC8Q6NZY4 707 aaKnown RBP17.08■□□□□ 0.32
SYNE3-202ENST00000553340 NCEH1Q6PIU2 408 aa17.08■□□□□ 0.32
SYNE3-202ENST00000553340 FAM151BQ6UXP7 276 aa17.08■□□□□ 0.32
SYNE3-202ENST00000553340 BEND7Q8N7W2 519 aaPredicted RBP17.08■□□□□ 0.32
SYNE3-202ENST00000553340 POC5Q8NA72 575 aa17.08■□□□□ 0.32
SYNE3-202ENST00000553340 TESCQ96BS2 214 aa17.08■□□□□ 0.32
SYNE3-202ENST00000553340 EID2BQ96D98 161 aa17.08■□□□□ 0.32
SYNE3-202ENST00000553340 XRN2Q9H0D6 950 aaKnown RBP eCLIP17.08■□□□□ 0.32
SYNE3-202ENST00000553340 REEP1Q9H902 201 aa17.08■□□□□ 0.32
SYNE3-202ENST00000553340 ZBTB20Q9HC78 741 aaPredicted RBP17.08■□□□□ 0.32
SYNE3-202ENST00000553340 AGAP5A6NIR3 686 aa17.07■□□□□ 0.32
SYNE3-202ENST00000553340 TBX1O43435 398 aa17.07■□□□□ 0.32
SYNE3-202ENST00000553340 WBP4O75554 376 aaKnown RBP17.07■□□□□ 0.32
SYNE3-202ENST00000553340 PRAMEF1O95521 474 aa17.07■□□□□ 0.32
SYNE3-202ENST00000553340 B3GALT4O96024 378 aa17.07■□□□□ 0.32
SYNE3-202ENST00000553340 PDYNP01213 254 aa17.07■□□□□ 0.32
SYNE3-202ENST00000553340 ZDHHC11BP0C7U3 371 aa17.07■□□□□ 0.32
SYNE3-202ENST00000553340 S100A1P23297 94 aa17.07■□□□□ 0.32
SYNE3-202ENST00000553340 VLDLRP98155 873 aa17.07■□□□□ 0.32
SYNE3-202ENST00000553340 NPRL3Q12980 569 aa17.07■□□□□ 0.32
SYNE3-202ENST00000553340 SLC14A1Q13336 389 aa17.07■□□□□ 0.32
SYNE3-202ENST00000553340 ARHGEF7Q14155 803 aa17.07■□□□□ 0.32
SYNE3-202ENST00000553340 SYT16Q17RD7 645 aa17.07■□□□□ 0.32
SYNE3-202ENST00000553340 COLEC12Q5KU26 742 aa17.07■□□□□ 0.32
SYNE3-202ENST00000553340 CCDC71Q8IV32 467 aaPredicted RBP17.07■□□□□ 0.32
SYNE3-202ENST00000553340 ZBTB2Q8N680 514 aa17.07■□□□□ 0.32
SYNE3-202ENST00000553340 CLDN19Q8N6F1 224 aa17.07■□□□□ 0.32
SYNE3-202ENST00000553340 UBE2FQ969M7 185 aa17.07■□□□□ 0.32
SYNE3-202ENST00000553340 PITX2Q99697 317 aa17.07■□□□□ 0.32
SYNE3-202ENST00000553340 SLX1AQ9BQ83 275 aa17.07■□□□□ 0.32
SYNE3-202ENST00000553340 GPRC5BQ9NZH0 403 aa17.07■□□□□ 0.32
SYNE3-202ENST00000553340 DNMT3LQ9UJW3 386 aa17.07■□□□□ 0.32
SYNE3-202ENST00000553340 PPT2Q9UMR5 302 aa17.07■□□□□ 0.32
SYNE3-202ENST00000553340 NOD1Q9Y239 953 aa17.07■□□□□ 0.32
SYNE3-202ENST00000553340 METTL15A6NJ78 407 aa17.07■□□□□ 0.32
SYNE3-202ENST00000553340 SYN3O14994 580 aa17.07■□□□□ 0.32
SYNE3-202ENST00000553340 SNPHO15079 494 aa17.07■□□□□ 0.32
SYNE3-202ENST00000553340 PCDHGA12O60330 932 aa17.07■□□□□ 0.32
SYNE3-202ENST00000553340 RFPL2O75678 378 aa17.07■□□□□ 0.32
SYNE3-202ENST00000553340 FKBP9O95302 570 aa17.07■□□□□ 0.32
SYNE3-202ENST00000553340 PRAMEF12O95522 483 aa17.07■□□□□ 0.32
SYNE3-202ENST00000553340 DLGAP3O95886 979 aa17.07■□□□□ 0.32
SYNE3-202ENST00000553340 CREMQ03060 361 aa17.07■□□□□ 0.32
SYNE3-202ENST00000553340 FAM171A1Q5VUB5 890 aa17.07■□□□□ 0.32
SYNE3-202ENST00000553340 DENND1CQ8IV53 801 aa17.07■□□□□ 0.32
SYNE3-202ENST00000553340 P3H2Q8IVL5 708 aa17.07■□□□□ 0.32
SYNE3-202ENST00000553340 PGBD3Q8N328 593 aa17.07■□□□□ 0.32
SYNE3-202ENST00000553340 SELENOMQ8WWX9 145 aa17.07■□□□□ 0.32
SYNE3-202ENST00000553340 SPATA17Q96L03 361 aa17.07■□□□□ 0.32
SYNE3-202ENST00000553340 C6orf62Q9GZU0 229 aaPredicted RBP17.07■□□□□ 0.32
SYNE3-202ENST00000553340 LATS2Q9NRM7 1088 aa17.07■□□□□ 0.32
SYNE3-202ENST00000553340 PABPN1LA6NDY0 278 aaKnown RBP17.06■□□□□ 0.32
SYNE3-202ENST00000553340 NUAK1O60285 661 aa17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms