RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 CHID1Q9BWS9 393 aa9.6□□□□□ -0.87
SS18-205ENST00000542420 KAT8Q9H7Z6 458 aaKnown RBP9.6□□□□□ -0.87
SS18-205ENST00000542420 SPATA6Q9NWH7 488 aaPredicted RBP9.6□□□□□ -0.87
SS18-205ENST00000542420 SLAMF8Q9P0V8 285 aa9.6□□□□□ -0.87
SS18-205ENST00000542420 PPT2Q9UMR5 302 aa9.6□□□□□ -0.87
SS18-205ENST00000542420 RUVBL1Q9Y265 456 aaKnown RBP9.6□□□□□ -0.87
SS18-205ENST00000542420 ALPK3Q96L96 1907 aa9.6□□□□□ -0.87
SS18-205ENST00000542420 C17orf113A0A1B0GUU1 675 aa9.59□□□□□ -0.87
SS18-205ENST00000542420 C9JVG2 144 aa9.59□□□□□ -0.87
SS18-205ENST00000542420 GSTA4O15217 222 aa9.59□□□□□ -0.87
SS18-205ENST00000542420 LEFTY1O75610 366 aa9.59□□□□□ -0.87
SS18-205ENST00000542420 ACRP10323 421 aa9.59□□□□□ -0.87
SS18-205ENST00000542420 CKMT2P17540 419 aa9.59□□□□□ -0.87
SS18-205ENST00000542420 SYN1P17600 705 aa9.59□□□□□ -0.87
SS18-205ENST00000542420 CTNNB1P35222 781 aa9.59□□□□□ -0.87
SS18-205ENST00000542420 GDF5P43026 501 aa9.59□□□□□ -0.87
SS18-205ENST00000542420 CD97P48960 835 aa9.59□□□□□ -0.87
SS18-205ENST00000542420 GZMMP51124 257 aa9.59□□□□□ -0.87
SS18-205ENST00000542420 ALDH3A2P51648 485 aa9.59□□□□□ -0.87
SS18-205ENST00000542420 PFN3P60673 137 aa9.59□□□□□ -0.87
SS18-205ENST00000542420 ADARB1P78563 741 aaKnown RBP9.59□□□□□ -0.87
SS18-205ENST00000542420 FPGSQ05932 587 aa9.59□□□□□ -0.87
SS18-205ENST00000542420 HSPA14Q0VDF9 509 aa9.59□□□□□ -0.87
SS18-205ENST00000542420 RFX4Q33E94 735 aa9.59□□□□□ -0.87
SS18-205ENST00000542420 SPANXN4Q5MJ08 99 aa9.59□□□□□ -0.87
SS18-205ENST00000542420 SUSD1Q6UWL2 747 aa9.59□□□□□ -0.87
SS18-205ENST00000542420 ABRAXAS1Q6UWZ7 409 aa9.59□□□□□ -0.87
SS18-205ENST00000542420 B3GNT6Q6ZMB0 384 aa9.59□□□□□ -0.87
SS18-205ENST00000542420 OR8J2Q8NGG1 315 aa9.59□□□□□ -0.87
SS18-205ENST00000542420 WDR20Q8TBZ3 569 aa9.59□□□□□ -0.87
SS18-205ENST00000542420 POF1BQ8WVV4 589 aa9.59□□□□□ -0.87
SS18-205ENST00000542420 NELL1Q92832 810 aa9.59□□□□□ -0.87
SS18-205ENST00000542420 TMEM159Q96B96 161 aa9.59□□□□□ -0.87
SS18-205ENST00000542420 TCEAL4Q96EI5 215 aa9.59□□□□□ -0.87
SS18-205ENST00000542420 AURKBQ96GD4 344 aaPredicted RBP9.59□□□□□ -0.87
SS18-205ENST00000542420 COQ10AQ96MF6 247 aa9.59□□□□□ -0.87
SS18-205ENST00000542420 PPM1MQ96MI6 270 aa9.59□□□□□ -0.87
SS18-205ENST00000542420 EHD1Q9H4M9 534 aa9.59□□□□□ -0.87
SS18-205ENST00000542420 HCFC1R1Q9NWW0 138 aa9.59□□□□□ -0.87
SS18-205ENST00000542420 VAPAQ9P0L0 249 aa9.59□□□□□ -0.87
SS18-205ENST00000542420 GMPR2Q9P2T1 348 aaKnown RBP9.59□□□□□ -0.87
SS18-205ENST00000542420 OAZ3Q9UMX2 235 aa9.59□□□□□ -0.87
SS18-205ENST00000542420 CORO2BQ9UQ03 480 aa9.59□□□□□ -0.87
SS18-205ENST00000542420 SH3GLB1Q9Y371 365 aa9.59□□□□□ -0.87
SS18-205ENST00000542420 BPTFQ12830 3046 aa9.59□□□□□ -0.87
SS18-205ENST00000542420 hCG_2014768A0A024R1R8 64 aa9.59□□□□□ -0.87
SS18-205ENST00000542420 SAC3D1A6NKF1 404 aa9.59□□□□□ -0.87
SS18-205ENST00000542420 ZBBXA8MT70 800 aa9.59□□□□□ -0.87
SS18-205ENST00000542420 FFAR3O14843 346 aa9.59□□□□□ -0.87
SS18-205ENST00000542420 GPR42O15529 346 aa9.59□□□□□ -0.87
SS18-205ENST00000542420 DPM1O60762 260 aa9.59□□□□□ -0.87
SS18-205ENST00000542420 MYO1DO94832 1006 aa9.59□□□□□ -0.87
SS18-205ENST00000542420 MTHFD1P11586 935 aaKnown RBP9.59□□□□□ -0.87
SS18-205ENST00000542420 ADH5P11766 374 aa9.59□□□□□ -0.87
SS18-205ENST00000542420 ITGB7P26010 798 aa9.59□□□□□ -0.87
SS18-205ENST00000542420 DGKGP49619 791 aa9.59□□□□□ -0.87
SS18-205ENST00000542420 DGKQP52824 942 aa9.59□□□□□ -0.87
SS18-205ENST00000542420 DPTQ07507 201 aa9.59□□□□□ -0.87
SS18-205ENST00000542420 DAG1Q14118 895 aa9.59□□□□□ -0.87
SS18-205ENST00000542420 DHCR24Q15392 516 aa9.59□□□□□ -0.87
SS18-205ENST00000542420 NADK2Q4G0N4 442 aa9.59□□□□□ -0.87
SS18-205ENST00000542420 ZNF658BQ4V348 819 aaPredicted RBP9.59□□□□□ -0.87
SS18-205ENST00000542420 FAM219BQ5XKK7 198 aa9.59□□□□□ -0.87
SS18-205ENST00000542420 TMEM215Q68D42 235 aa9.59□□□□□ -0.87
SS18-205ENST00000542420 NEK5Q6P3R8 708 aa9.59□□□□□ -0.87
SS18-205ENST00000542420 LIPIQ6XZB0 460 aa9.59□□□□□ -0.87
SS18-205ENST00000542420 OTOP2Q7RTS6 562 aa9.59□□□□□ -0.87
SS18-205ENST00000542420 ZNF554Q86TJ5 538 aa9.59□□□□□ -0.87
SS18-205ENST00000542420 MSRB3Q8IXL7 192 aa9.59□□□□□ -0.87
SS18-205ENST00000542420 DCBLD1Q8N8Z6 715 aa9.59□□□□□ -0.87
SS18-205ENST00000542420 SDCCAG3Q96C92 435 aa9.59□□□□□ -0.87
SS18-205ENST00000542420 DTD2Q96FN9 168 aa9.59□□□□□ -0.87
SS18-205ENST00000542420 PHF12Q96QT6 1004 aa9.59□□□□□ -0.87
SS18-205ENST00000542420 SMG9Q9H0W8 520 aaKnown RBP9.59□□□□□ -0.87
SS18-205ENST00000542420 ABCG8Q9H221 673 aa9.59□□□□□ -0.87
SS18-205ENST00000542420 SERHLQ9NQF3 203 aa9.59□□□□□ -0.87
SS18-205ENST00000542420 DCAF13Q9NV06 445 aaKnown RBP9.59□□□□□ -0.87
SS18-205ENST00000542420 DDX18Q9NVP1 670 aaKnown RBP9.59□□□□□ -0.87
SS18-205ENST00000542420 NIPSNAP3AQ9UFN0 247 aaPredicted RBP9.59□□□□□ -0.87
SS18-205ENST00000542420 PCDHGA11Q9Y5H2 935 aa9.59□□□□□ -0.87
SS18-205ENST00000542420 EDDM13A0A1B0GTR0 161 aa9.58□□□□□ -0.88
SS18-205ENST00000542420 HIDE1A8MVS5 230 aa9.58□□□□□ -0.88
SS18-205ENST00000542420 CXCR6O00574 342 aa9.58□□□□□ -0.88
SS18-205ENST00000542420 DFNA5O60443 496 aa9.58□□□□□ -0.88
SS18-205ENST00000542420 MYCP01106 439 aaPredicted RBP9.58□□□□□ -0.88
SS18-205ENST00000542420 SDC1P18827 310 aa9.58□□□□□ -0.88
SS18-205ENST00000542420 RPL3P39023 403 aaKnown RBP9.58□□□□□ -0.88
SS18-205ENST00000542420 HMGCS1Q01581 520 aa9.58□□□□□ -0.88
SS18-205ENST00000542420 TMED1Q13445 227 aa9.58□□□□□ -0.88
SS18-205ENST00000542420 PTGR1Q14914 329 aa9.58□□□□□ -0.88
SS18-205ENST00000542420 EML3Q32P44 896 aa9.58□□□□□ -0.88
SS18-205ENST00000542420 SYTL3Q4VX76 610 aa9.58□□□□□ -0.88
SS18-205ENST00000542420 TMEM259Q4ZIN3 620 aa9.58□□□□□ -0.88
SS18-205ENST00000542420 SPIN4Q56A73 249 aa9.58□□□□□ -0.88
SS18-205ENST00000542420 ARSIQ5FYB1 569 aa9.58□□□□□ -0.88
SS18-205ENST00000542420 ZC3H12BQ5HYM0 836 aaKnown RBP9.58□□□□□ -0.88
SS18-205ENST00000542420 IYDQ6PHW0 289 aa9.58□□□□□ -0.88
SS18-205ENST00000542420 GPR180Q86V85 440 aa9.58□□□□□ -0.88
SS18-205ENST00000542420 SATL1Q86VE3 508 aa9.58□□□□□ -0.88
SS18-205ENST00000542420 IFNEQ86WN2 208 aa9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms