RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 CNPY4Q8N129 248 aa12.11□□□□□ -0.47
CLSTN3-208ENST00000538933 RIBC1Q8N443 379 aaPredicted RBP12.11□□□□□ -0.47
CLSTN3-208ENST00000538933 GPATCH11Q8N954 259 aa12.11□□□□□ -0.47
CLSTN3-208ENST00000538933 EPS8L3Q8TE67 593 aaKnown RBP12.11□□□□□ -0.47
CLSTN3-208ENST00000538933 SLC44A1Q8WWI5 657 aa12.11□□□□□ -0.47
CLSTN3-208ENST00000538933 TSSK1BQ9BXA7 367 aa12.11□□□□□ -0.47
CLSTN3-208ENST00000538933 LDHAL6BQ9BYZ2 381 aaPredicted RBP12.11□□□□□ -0.47
CLSTN3-208ENST00000538933 UCK1Q9HA47 277 aa12.11□□□□□ -0.47
CLSTN3-208ENST00000538933 CPNE7Q9UBL6 633 aa12.11□□□□□ -0.47
CLSTN3-208ENST00000538933 FETUBQ9UGM5 382 aa12.11□□□□□ -0.47
CLSTN3-208ENST00000538933 TBK1Q9UHD2 729 aa12.11□□□□□ -0.47
CLSTN3-208ENST00000538933 GNPTGQ9UJJ9 305 aa12.11□□□□□ -0.47
CLSTN3-208ENST00000538933 TRBV5-4A0A0C4DH59 114 aa12.1□□□□□ -0.47
CLSTN3-208ENST00000538933 E5RI56 91 aa12.1□□□□□ -0.47
CLSTN3-208ENST00000538933 PRMT5O14744 637 aaPredicted RBP12.1□□□□□ -0.47
CLSTN3-208ENST00000538933 RGS16O15492 202 aaPredicted RBP12.1□□□□□ -0.47
CLSTN3-208ENST00000538933 LRRTM2O43300 516 aa12.1□□□□□ -0.47
CLSTN3-208ENST00000538933 MTX2O75431 263 aa12.1□□□□□ -0.47
CLSTN3-208ENST00000538933 F7P08709 466 aaPredicted RBP12.1□□□□□ -0.47
CLSTN3-208ENST00000538933 OR56A5P0C7T3 313 aa12.1□□□□□ -0.47
CLSTN3-208ENST00000538933 F3P13726 295 aa12.1□□□□□ -0.47
CLSTN3-208ENST00000538933 KRT15P19012 456 aa12.1□□□□□ -0.47
CLSTN3-208ENST00000538933 SAT1P21673 171 aa12.1□□□□□ -0.47
CLSTN3-208ENST00000538933 CNTFP26441 200 aa12.1□□□□□ -0.47
CLSTN3-208ENST00000538933 ATP5DP30049 168 aa12.1□□□□□ -0.47
CLSTN3-208ENST00000538933 FMO4P31512 558 aa12.1□□□□□ -0.47
CLSTN3-208ENST00000538933 NSG1P42857 185 aa12.1□□□□□ -0.47
CLSTN3-208ENST00000538933 GPS2Q13227 327 aa12.1□□□□□ -0.47
CLSTN3-208ENST00000538933 CNSTQ6PJW8 725 aa12.1□□□□□ -0.47
CLSTN3-208ENST00000538933 GALNT7Q86SF2 657 aa12.1□□□□□ -0.47
CLSTN3-208ENST00000538933 SLC9B2Q86UD5 537 aa12.1□□□□□ -0.47
CLSTN3-208ENST00000538933 PPP1R3BQ86XI6 285 aa12.1□□□□□ -0.47
CLSTN3-208ENST00000538933 GALNT13Q8IUC8 556 aa12.1□□□□□ -0.47
CLSTN3-208ENST00000538933 DDHD1Q8NEL9 900 aa12.1□□□□□ -0.47
CLSTN3-208ENST00000538933 INPP5DQ92835 1189 aa12.1□□□□□ -0.47
CLSTN3-208ENST00000538933 TGM7Q96PF1 710 aa12.1□□□□□ -0.47
CLSTN3-208ENST00000538933 FCRL4Q96PJ5 515 aa12.1□□□□□ -0.47
CLSTN3-208ENST00000538933 RBBP8Q99708 897 aa12.1□□□□□ -0.47
CLSTN3-208ENST00000538933 STMN4Q9H169 189 aaPredicted RBP12.1□□□□□ -0.47
CLSTN3-208ENST00000538933 RHOJQ9H4E5 214 aa12.1□□□□□ -0.47
CLSTN3-208ENST00000538933 VIPAS39Q9H9C1 493 aa12.1□□□□□ -0.47
CLSTN3-208ENST00000538933 CORO1CQ9ULV4 474 aaPredicted RBP12.1□□□□□ -0.47
CLSTN3-208ENST00000538933 FARSAQ9Y285 508 aaKnown RBP12.1□□□□□ -0.47
CLSTN3-208ENST00000538933 PRKAB1Q9Y478 270 aa12.1□□□□□ -0.47
CLSTN3-208ENST00000538933 PSAT1Q9Y617 370 aa12.1□□□□□ -0.47
CLSTN3-208ENST00000538933 CCDC88CQ9P219 2028 aa12.1□□□□□ -0.47
CLSTN3-208ENST00000538933 ZNF469Q96JG9 3925 aaPredicted RBP12.09□□□□□ -0.47
CLSTN3-208ENST00000538933 KIR2DS5A0A0G2JLQ3 304 aa12.09□□□□□ -0.47
CLSTN3-208ENST00000538933 A0A0G2JNG1 304 aa12.09□□□□□ -0.47
CLSTN3-208ENST00000538933 FAM95CA0A1B0GW59 222 aa12.09□□□□□ -0.47
CLSTN3-208ENST00000538933 H3BMM5 538 aa12.09□□□□□ -0.47
CLSTN3-208ENST00000538933 KIR2DS3K7RE56 304 aa12.09□□□□□ -0.47
CLSTN3-208ENST00000538933 QSOX1O00391 747 aa12.09□□□□□ -0.47
CLSTN3-208ENST00000538933 ZG16O60844 167 aa12.09□□□□□ -0.47
CLSTN3-208ENST00000538933 FAM155BO75949 473 aa12.09□□□□□ -0.47
CLSTN3-208ENST00000538933 CDK14O94921 469 aa12.09□□□□□ -0.47
CLSTN3-208ENST00000538933 HAUS5O94927 633 aa12.09□□□□□ -0.47
CLSTN3-208ENST00000538933 S1PR4O95977 384 aa12.09□□□□□ -0.47
CLSTN3-208ENST00000538933 AHSGP02765 367 aa12.09□□□□□ -0.47
CLSTN3-208ENST00000538933 ESR1P03372 595 aa12.09□□□□□ -0.47
CLSTN3-208ENST00000538933 SNRPAP09012 282 aaKnown RBP12.09□□□□□ -0.47
CLSTN3-208ENST00000538933 ATP1B2P14415 290 aaPredicted RBP12.09□□□□□ -0.47
CLSTN3-208ENST00000538933 TYRP1P17643 537 aa12.09□□□□□ -0.47
CLSTN3-208ENST00000538933 NELFEP18615 380 aaKnown RBP12.09□□□□□ -0.47
CLSTN3-208ENST00000538933 ITGA3P26006 1051 aa12.09□□□□□ -0.47
CLSTN3-208ENST00000538933 RPS15P62841 145 aaKnown RBP12.09□□□□□ -0.47
CLSTN3-208ENST00000538933 ZNF844Q08AG5 666 aa12.09□□□□□ -0.47
CLSTN3-208ENST00000538933 TMEM115Q12893 351 aaPredicted RBP12.09□□□□□ -0.47
CLSTN3-208ENST00000538933 KIR2DS5Q14953 304 aa12.09□□□□□ -0.47
CLSTN3-208ENST00000538933 MROH9Q5TGP6 573 aa12.09□□□□□ -0.47
CLSTN3-208ENST00000538933 FAM45BPQ6NSW5 357 aa12.09□□□□□ -0.47
CLSTN3-208ENST00000538933 ADGRD1Q6QNK2 874 aa12.09□□□□□ -0.47
CLSTN3-208ENST00000538933 DET1Q7L5Y6 550 aa12.09□□□□□ -0.47
CLSTN3-208ENST00000538933 PRSS42Q7Z5A4 293 aa12.09□□□□□ -0.47
CLSTN3-208ENST00000538933 ZC3HC1Q86WB0 502 aaKnown RBP12.09□□□□□ -0.47
CLSTN3-208ENST00000538933 FAM45AQ8TCE6 357 aa12.09□□□□□ -0.47
CLSTN3-208ENST00000538933 ZBTB9Q96C00 473 aa12.09□□□□□ -0.47
CLSTN3-208ENST00000538933 VPS39Q96JC1 886 aa12.09□□□□□ -0.47
CLSTN3-208ENST00000538933 PANX3Q96QZ0 392 aa12.09□□□□□ -0.47
CLSTN3-208ENST00000538933 OR2AG1Q9H205 316 aa12.09□□□□□ -0.47
CLSTN3-208ENST00000538933 TRIM39Q9HCM9 518 aa12.09□□□□□ -0.47
CLSTN3-208ENST00000538933 SEMA5BQ9P283 1151 aa12.09□□□□□ -0.47
CLSTN3-208ENST00000538933 ZNHIT2Q9UHR6 403 aa12.09□□□□□ -0.47
CLSTN3-208ENST00000538933 ZNF180Q9UJW8 692 aa12.09□□□□□ -0.47
CLSTN3-208ENST00000538933 CNOT6Q9ULM6 557 aaKnown RBP12.09□□□□□ -0.47
CLSTN3-208ENST00000538933 KCNK6Q9Y257 313 aa12.09□□□□□ -0.47
CLSTN3-208ENST00000538933 B3GNT3Q9Y2A9 372 aa12.09□□□□□ -0.47
CLSTN3-208ENST00000538933 COMMD10Q9Y6G5 202 aa12.09□□□□□ -0.47
CLSTN3-208ENST00000538933 CNTRLQ7Z7A1 2325 aa12.08□□□□□ -0.48
CLSTN3-208ENST00000538933 A6NL46 340 aa12.08□□□□□ -0.48
CLSTN3-208ENST00000538933 AGAP14A8MT82 685 aa12.08□□□□□ -0.48
CLSTN3-208ENST00000538933 VEGFDO43915 354 aa12.08□□□□□ -0.48
CLSTN3-208ENST00000538933 OR1I1O60431 355 aa12.08□□□□□ -0.48
CLSTN3-208ENST00000538933 VPS26AO75436 327 aa12.08□□□□□ -0.48
CLSTN3-208ENST00000538933 UBXN7O94888 489 aa12.08□□□□□ -0.48
CLSTN3-208ENST00000538933 C1QAP02745 245 aa12.08□□□□□ -0.48
CLSTN3-208ENST00000538933 PKMP14618 531 aaKnown RBP12.08□□□□□ -0.48
CLSTN3-208ENST00000538933 FOLR1P15328 257 aa12.08□□□□□ -0.48
CLSTN3-208ENST00000538933 XRCC1P18887 633 aaPredicted RBP12.08□□□□□ -0.48
CLSTN3-208ENST00000538933 CHRM3P20309 590 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms