RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 DUSP26Q9BV47 211 aa5.38□□□□□ -1.55
CD44-236ENST00000533222 ADI1Q9BV57 179 aa5.38□□□□□ -1.55
CD44-236ENST00000533222 ADGRE3Q9BY15 652 aa5.38□□□□□ -1.55
CD44-236ENST00000533222 ZNF518BQ9C0D4 1074 aa5.38□□□□□ -1.55
CD44-236ENST00000533222 ZMYND12Q9H0C1 365 aa5.38□□□□□ -1.55
CD44-236ENST00000533222 SHARPINQ9H0F6 387 aa5.38□□□□□ -1.55
CD44-236ENST00000533222 MMP27Q9H306 513 aa5.38□□□□□ -1.55
CD44-236ENST00000533222 OSGEPL1Q9H4B0 414 aa5.38□□□□□ -1.55
CD44-236ENST00000533222 SPON1Q9HCB6 807 aa5.38□□□□□ -1.55
CD44-236ENST00000533222 VAT1LQ9HCJ6 419 aa5.38□□□□□ -1.55
CD44-236ENST00000533222 PDE7BQ9NP56 450 aa5.38□□□□□ -1.55
CD44-236ENST00000533222 EQTNQ9NQ60 294 aa5.38□□□□□ -1.55
CD44-236ENST00000533222 CTPS2Q9NRF8 586 aa5.38□□□□□ -1.55
CD44-236ENST00000533222 PLSCR4Q9NRQ2 329 aa5.38□□□□□ -1.55
CD44-236ENST00000533222 AGPAT3Q9NRZ7 376 aa5.38□□□□□ -1.55
CD44-236ENST00000533222 PNPLA3Q9NST1 481 aa5.38□□□□□ -1.55
CD44-236ENST00000533222 RBM12Q9NTZ6 932 aaKnown RBP5.38□□□□□ -1.55
CD44-236ENST00000533222 ABHD10Q9NUJ1 306 aa5.38□□□□□ -1.55
CD44-236ENST00000533222 IMP3Q9NV31 184 aaKnown RBP5.38□□□□□ -1.55
CD44-236ENST00000533222 ADPRHL2Q9NX46 363 aa5.38□□□□□ -1.55
CD44-236ENST00000533222 TREM2Q9NZC2 230 aa5.38□□□□□ -1.55
CD44-236ENST00000533222 LIPT1Q9Y234 373 aa5.38□□□□□ -1.55
CD44-236ENST00000533222 SBDSQ9Y3A5 250 aaKnown RBP eCLIP5.38□□□□□ -1.55
CD44-236ENST00000533222 KIF20BQ96Q89 1820 aa5.38□□□□□ -1.55
CD44-236ENST00000533222 ABCC4O15439 1325 aa5.38□□□□□ -1.55
CD44-236ENST00000533222 SALL3Q9BXA9 1300 aa5.38□□□□□ -1.55
CD44-236ENST00000533222 CC2D2AQ9P2K1 1620 aa5.37□□□□□ -1.55
CD44-236ENST00000533222 ARHGEF28Q8N1W1 1705 aaKnown RBP5.37□□□□□ -1.55
CD44-236ENST00000533222 MYH4Q9Y623 1939 aa5.37□□□□□ -1.55
CD44-236ENST00000533222 A0A1W2PRG0 241 aa5.37□□□□□ -1.55
CD44-236ENST00000533222 A0A1W2PRX2 142 aa5.37□□□□□ -1.55
CD44-236ENST00000533222 RAB19A4D1S5 217 aa5.37□□□□□ -1.55
CD44-236ENST00000533222 CCDC154A6NI56 674 aa5.37□□□□□ -1.55
CD44-236ENST00000533222 OR6C75A6NL08 312 aa5.37□□□□□ -1.55
CD44-236ENST00000533222 EIF4E1BA6NMX2 242 aaKnown RBP5.37□□□□□ -1.55
CD44-236ENST00000533222 KCNU1A8MYU2 1149 aa5.37□□□□□ -1.55
CD44-236ENST00000533222 CTDSP2O14595 271 aa5.37□□□□□ -1.55
CD44-236ENST00000533222 GYG2O15488 501 aa5.37□□□□□ -1.55
CD44-236ENST00000533222 RGS16O15492 202 aaPredicted RBP5.37□□□□□ -1.55
CD44-236ENST00000533222 SYNCRIPO60506 623 aaKnown RBP5.37□□□□□ -1.55
CD44-236ENST00000533222 TLR5O60602 858 aa5.37□□□□□ -1.55
CD44-236ENST00000533222 KERAO60938 352 aa5.37□□□□□ -1.55
CD44-236ENST00000533222 IDH1O75874 414 aaKnown RBP5.37□□□□□ -1.55
CD44-236ENST00000533222 CAMTA2O94983 1202 aa5.37□□□□□ -1.55
CD44-236ENST00000533222 NADKO95544 446 aaPredicted RBP5.37□□□□□ -1.55
CD44-236ENST00000533222 SHBGP04278 402 aa5.37□□□□□ -1.55
CD44-236ENST00000533222 LCKP06239 509 aa5.37□□□□□ -1.55
CD44-236ENST00000533222 GNAO1P09471 354 aa5.37□□□□□ -1.55
CD44-236ENST00000533222 SNRPA1P09661 255 aaKnown RBP5.37□□□□□ -1.55
CD44-236ENST00000533222 PLA2G4BP0C869 781 aa5.37□□□□□ -1.55
CD44-236ENST00000533222 SLC2A1P11166 492 aa5.37□□□□□ -1.55
CD44-236ENST00000533222 MSH3P20585 1137 aa5.37□□□□□ -1.55
CD44-236ENST00000533222 DNASE1P24855 282 aa5.37□□□□□ -1.55
CD44-236ENST00000533222 HNRNPH3P31942 346 aaKnown RBP5.37□□□□□ -1.55
CD44-236ENST00000533222 HPCAL1P37235 193 aa5.37□□□□□ -1.55
CD44-236ENST00000533222 CARSP49589 748 aaKnown RBP5.37□□□□□ -1.55
CD44-236ENST00000533222 CASP4P49662 377 aa5.37□□□□□ -1.55
CD44-236ENST00000533222 RGS6P49758 472 aa5.37□□□□□ -1.55
CD44-236ENST00000533222 LIG4P49917 911 aa5.37□□□□□ -1.55
CD44-236ENST00000533222 SERPINH1P50454 418 aaKnown RBP5.37□□□□□ -1.55
CD44-236ENST00000533222 PRMT2P55345 433 aa5.37□□□□□ -1.55
CD44-236ENST00000533222 TAP2Q03519 686 aa5.37□□□□□ -1.55
CD44-236ENST00000533222 MGAT3Q09327 533 aa5.37□□□□□ -1.55
CD44-236ENST00000533222 INCA1Q0VD86 236 aa5.37□□□□□ -1.55
CD44-236ENST00000533222 ITGADQ13349 1161 aa5.37□□□□□ -1.55
CD44-236ENST00000533222 POLD3Q15054 466 aaPredicted RBP5.37□□□□□ -1.55
CD44-236ENST00000533222 KYNUQ16719 465 aa5.37□□□□□ -1.55
CD44-236ENST00000533222 SYT16Q17RD7 645 aa5.37□□□□□ -1.55
CD44-236ENST00000533222 FAM83EQ2M2I3 478 aa5.37□□□□□ -1.55
CD44-236ENST00000533222 UAP1L1Q3KQV9 507 aa5.37□□□□□ -1.55
CD44-236ENST00000533222 C2orf76Q3KRA6 126 aa5.37□□□□□ -1.55
CD44-236ENST00000533222 CDNFQ49AH0 187 aa5.37□□□□□ -1.55
CD44-236ENST00000533222 GAGE13Q4V321 117 aa5.37□□□□□ -1.55
CD44-236ENST00000533222 USP39Q53GS9 565 aaKnown RBP5.37□□□□□ -1.55
CD44-236ENST00000533222 IL31Q6EBC2 164 aa5.37□□□□□ -1.55
CD44-236ENST00000533222 SLC25A24Q6NUK1 477 aa5.37□□□□□ -1.55
CD44-236ENST00000533222 EFCAB12Q6NXP0 572 aa5.37□□□□□ -1.55
CD44-236ENST00000533222 RFWD3Q6PCD5 774 aa5.37□□□□□ -1.55
CD44-236ENST00000533222 TMEM65Q6PI78 240 aa5.37□□□□□ -1.55
CD44-236ENST00000533222 FAM111BQ6SJ93 734 aa5.37□□□□□ -1.55
CD44-236ENST00000533222 USP49Q70CQ1 688 aa5.37□□□□□ -1.55
CD44-236ENST00000533222 BHLHA15Q7RTS1 189 aaPredicted RBP5.37□□□□□ -1.55
CD44-236ENST00000533222 EFL1Q7Z2Z2 1120 aaKnown RBP5.37□□□□□ -1.55
CD44-236ENST00000533222 P4HA3Q7Z4N8 544 aa5.37□□□□□ -1.55
CD44-236ENST00000533222 DCXRQ7Z4W1 244 aa5.37□□□□□ -1.55
CD44-236ENST00000533222 TFAP2DQ7Z6R9 452 aa5.37□□□□□ -1.55
CD44-236ENST00000533222 ISCA2Q86U28 154 aa5.37□□□□□ -1.55
CD44-236ENST00000533222 ANKRD46Q86W74 232 aa5.37□□□□□ -1.55
CD44-236ENST00000533222 SLC13A5Q86YT5 568 aaPredicted RBP5.37□□□□□ -1.55
CD44-236ENST00000533222 KRTAP1-3Q8IUG1 177 aa5.37□□□□□ -1.55
CD44-236ENST00000533222 TCTE3Q8IZS6 198 aa5.37□□□□□ -1.55
CD44-236ENST00000533222 CENPLQ8N0S6 344 aaPredicted RBP5.37□□□□□ -1.55
CD44-236ENST00000533222 CELF5Q8N6W0 485 aaKnown RBP5.37□□□□□ -1.55
CD44-236ENST00000533222 CCDC185Q8N715 623 aa5.37□□□□□ -1.55
CD44-236ENST00000533222 EMC1Q8N766 993 aa5.37□□□□□ -1.55
CD44-236ENST00000533222 ZNF781Q8N8C0 355 aa5.37□□□□□ -1.55
CD44-236ENST00000533222 OR1M1Q8NGA1 313 aa5.37□□□□□ -1.55
CD44-236ENST00000533222 NDNFQ8TB73 568 aa5.37□□□□□ -1.55
CD44-236ENST00000533222 ZNF480Q8WV37 535 aa5.37□□□□□ -1.55
CD44-236ENST00000533222 SSH1Q8WYL5 1049 aa5.37□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms