RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 NBASA2RRP1 2371 aa3.77□□□□□ -1.81
CD44-235ENST00000532339 LAMA4Q16363 1823 aa3.77□□□□□ -1.81
CD44-235ENST00000532339 FOCADQ5VW36 1801 aa3.77□□□□□ -1.81
CD44-235ENST00000532339 GOLGA4Q13439 2230 aaKnown RBP3.76□□□□□ -1.81
CD44-235ENST00000532339 MED13LQ71F56 2210 aa3.76□□□□□ -1.81
CD44-235ENST00000532339 PTPRBP23467 1997 aa3.76□□□□□ -1.81
CD44-235ENST00000532339 JMJD1CQ15652 2540 aa3.76□□□□□ -1.81
CD44-235ENST00000532339 A0A1W2PQ09 198 aa3.76□□□□□ -1.81
CD44-235ENST00000532339 HSPB2A8KAH6 182 aa3.76□□□□□ -1.81
CD44-235ENST00000532339 EIF3CLB5ME19 914 aaKnown RBP3.76□□□□□ -1.81
CD44-235ENST00000532339 USP17L23D6RBM5 183 aa3.76□□□□□ -1.81
CD44-235ENST00000532339 TULP2O00295 520 aa3.76□□□□□ -1.81
CD44-235ENST00000532339 BEST1O76090 585 aa3.76□□□□□ -1.81
CD44-235ENST00000532339 HOXB5P09067 269 aa3.76□□□□□ -1.81
CD44-235ENST00000532339 SMIM10L2AP0DMW4 78 aa3.76□□□□□ -1.81
CD44-235ENST00000532339 SMIM10L2BP0DMW5 78 aa3.76□□□□□ -1.81
CD44-235ENST00000532339 AMD1P17707 334 aa3.76□□□□□ -1.81
CD44-235ENST00000532339 GABRB1P18505 474 aa3.76□□□□□ -1.81
CD44-235ENST00000532339 MCM3P25205 808 aa3.76□□□□□ -1.81
CD44-235ENST00000532339 CD52P31358 61 aa3.76□□□□□ -1.81
CD44-235ENST00000532339 MRPL12P52815 198 aaKnown RBP3.76□□□□□ -1.81
CD44-235ENST00000532339 F2RL1P55085 397 aa3.76□□□□□ -1.81
CD44-235ENST00000532339 CCDC173Q0VFZ6 552 aa3.76□□□□□ -1.81
CD44-235ENST00000532339 AIMP2Q13155 320 aaKnown RBP3.76□□□□□ -1.81
CD44-235ENST00000532339 VEPH1Q14D04 833 aa3.76□□□□□ -1.81
CD44-235ENST00000532339 HSPB2Q16082 182 aa3.76□□□□□ -1.81
CD44-235ENST00000532339 HIST2H2ACQ16777 129 aaPredicted RBP3.76□□□□□ -1.81
CD44-235ENST00000532339 ASTE1Q2TB18 679 aaPredicted RBP3.76□□□□□ -1.81
CD44-235ENST00000532339 CXorf66Q5JRM2 361 aaPredicted RBP3.76□□□□□ -1.81
CD44-235ENST00000532339 RAB41Q5JT25 222 aa3.76□□□□□ -1.81
CD44-235ENST00000532339 LRRC8EQ6NSJ5 796 aa3.76□□□□□ -1.81
CD44-235ENST00000532339 SLC30A6Q6NXT4 461 aa3.76□□□□□ -1.81
CD44-235ENST00000532339 UNQ6126/PRO20091Q6UXV3 157 aa3.76□□□□□ -1.81
CD44-235ENST00000532339 ZNF771Q7L3S4 317 aaPredicted RBP3.76□□□□□ -1.81
CD44-235ENST00000532339 KRT74Q7RTS7 529 aa3.76□□□□□ -1.81
CD44-235ENST00000532339 TBC1D26Q86UD7 250 aa3.76□□□□□ -1.81
CD44-235ENST00000532339 MARCH9Q86YJ5 346 aa3.76□□□□□ -1.81
CD44-235ENST00000532339 TDRPQ86YL5 185 aa3.76□□□□□ -1.81
CD44-235ENST00000532339 NAXDQ8IW45 347 aa3.76□□□□□ -1.81
CD44-235ENST00000532339 LRRC43Q8N309 656 aa3.76□□□□□ -1.81
CD44-235ENST00000532339 LMNTD1Q8N9Z9 388 aa3.76□□□□□ -1.81
CD44-235ENST00000532339 FGF13Q92913 245 aa3.76□□□□□ -1.81
CD44-235ENST00000532339 SCMH1Q96GD3 660 aa3.76□□□□□ -1.81
CD44-235ENST00000532339 BBS4Q96RK4 519 aa3.76□□□□□ -1.81
CD44-235ENST00000532339 KXD1Q9BQD3 176 aa3.76□□□□□ -1.81
CD44-235ENST00000532339 SPRY4Q9C004 299 aa3.76□□□□□ -1.81
CD44-235ENST00000532339 TMEM117Q9H0C3 514 aa3.76□□□□□ -1.81
CD44-235ENST00000532339 TKTL2Q9H0I9 626 aa3.76□□□□□ -1.81
CD44-235ENST00000532339 TRPV5Q9NQA5 729 aa3.76□□□□□ -1.81
CD44-235ENST00000532339 HMG20BQ9P0W2 317 aa3.76□□□□□ -1.81
CD44-235ENST00000532339 CARD8Q9Y2G2 431 aa3.76□□□□□ -1.81
CD44-235ENST00000532339 FANCIQ9NVI1 1328 aa3.75□□□□□ -1.81
CD44-235ENST00000532339 A0A0U1RQF3 1178 aa3.75□□□□□ -1.81
CD44-235ENST00000532339 VPS37CA5D8V6 355 aaPredicted RBP3.75□□□□□ -1.81
CD44-235ENST00000532339 FAM149AA5PLN7 773 aa3.75□□□□□ -1.81
CD44-235ENST00000532339 CDRT15L2A8MXV6 281 aa3.75□□□□□ -1.81
CD44-235ENST00000532339 PRAC2D3DTV9 90 aa3.75□□□□□ -1.81
CD44-235ENST00000532339 PLK4O00444 970 aa3.75□□□□□ -1.81
CD44-235ENST00000532339 EXTL3O43909 919 aa3.75□□□□□ -1.81
CD44-235ENST00000532339 HNRNPCL1O60812 293 aaKnown RBP3.75□□□□□ -1.81
CD44-235ENST00000532339 RFPL2O75678 378 aa3.75□□□□□ -1.81
CD44-235ENST00000532339 IPO7O95373 1038 aaKnown RBP3.75□□□□□ -1.81
CD44-235ENST00000532339 NDUFB10O96000 172 aa3.75□□□□□ -1.81
CD44-235ENST00000532339 MT-CYBP00156 380 aaPredicted RBP3.75□□□□□ -1.81
CD44-235ENST00000532339 TFPIP10646 304 aa3.75□□□□□ -1.81
CD44-235ENST00000532339 SRD5A1P18405 259 aa3.75□□□□□ -1.81
CD44-235ENST00000532339 ITGAXP20702 1163 aa3.75□□□□□ -1.81
CD44-235ENST00000532339 PPP2R1AP30153 589 aa3.75□□□□□ -1.81
CD44-235ENST00000532339 ADORA1P30542 326 aa3.75□□□□□ -1.81
CD44-235ENST00000532339 GCH1P30793 250 aa3.75□□□□□ -1.81
CD44-235ENST00000532339 NNMTP40261 264 aa3.75□□□□□ -1.81
CD44-235ENST00000532339 EIF2DP41214 584 aaKnown RBP3.75□□□□□ -1.81
CD44-235ENST00000532339 CXCR3P49682 368 aa3.75□□□□□ -1.81
CD44-235ENST00000532339 HILS1P60008 231 aa3.75□□□□□ -1.81
CD44-235ENST00000532339 PRAMEP78395 509 aa3.75□□□□□ -1.81
CD44-235ENST00000532339 KLRC3Q07444 240 aa3.75□□□□□ -1.81
CD44-235ENST00000532339 OLIG2Q13516 323 aa3.75□□□□□ -1.81
CD44-235ENST00000532339 BAATQ14032 418 aaPredicted RBP3.75□□□□□ -1.81
CD44-235ENST00000532339 MVPQ14764 893 aaKnown RBP3.75□□□□□ -1.81
CD44-235ENST00000532339 CCDC96Q2M329 555 aa3.75□□□□□ -1.81
CD44-235ENST00000532339 FAM69BQ5VUD6 431 aa3.75□□□□□ -1.81
CD44-235ENST00000532339 MEX3BQ6ZN04 569 aaKnown RBP3.75□□□□□ -1.81
CD44-235ENST00000532339 C9orf139Q6ZV77 190 aa3.75□□□□□ -1.81
CD44-235ENST00000532339 SLC24A5Q71RS6 500 aa3.75□□□□□ -1.81
CD44-235ENST00000532339 TUBA1AQ71U36 451 aa3.75□□□□□ -1.81
CD44-235ENST00000532339 ADGRA1Q86SQ6 560 aa3.75□□□□□ -1.81
CD44-235ENST00000532339 PRPF39Q86UA1 669 aaKnown RBP3.75□□□□□ -1.81
CD44-235ENST00000532339 DCUN1D3Q8IWE4 304 aa3.75□□□□□ -1.81
CD44-235ENST00000532339 SFTPA2Q8IWL1 248 aa3.75□□□□□ -1.81
CD44-235ENST00000532339 TAGAPQ8N103 731 aa3.75□□□□□ -1.81
CD44-235ENST00000532339 MINDY1Q8N5J2 469 aa3.75□□□□□ -1.81
CD44-235ENST00000532339 SECTM1Q8WVN6 248 aa3.75□□□□□ -1.81
CD44-235ENST00000532339 SORCS1Q8WY21 1168 aa3.75□□□□□ -1.81
CD44-235ENST00000532339 LGMNQ99538 433 aa3.75□□□□□ -1.81
CD44-235ENST00000532339 TUBA1CQ9BQE3 449 aa3.75□□□□□ -1.81
CD44-235ENST00000532339 C16orf70Q9BSU1 422 aa3.75□□□□□ -1.81
CD44-235ENST00000532339 GTPBP2Q9BX10 602 aaKnown RBP3.75□□□□□ -1.81
CD44-235ENST00000532339 MAK16Q9BXY0 300 aaKnown RBP3.75□□□□□ -1.81
CD44-235ENST00000532339 TXLNGYQ9BZA5 131 aa3.75□□□□□ -1.81
CD44-235ENST00000532339 NT5C3AQ9H0P0 336 aa3.75□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms