RNA–Protein interactions for RNA: ENST00000526669.6

CD44-224, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5 BASIC

Gene CD44, Length 870 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-224ENST00000526669 SPIDRQ14159 915 aa13.25□□□□□ -0.29
CD44-224ENST00000526669 ARHGAP19Q14CB8 494 aa13.25□□□□□ -0.29
CD44-224ENST00000526669 PTCHD3Q3KNS1 767 aa13.25□□□□□ -0.29
CD44-224ENST00000526669 PRAMEF13Q5VWM6 474 aa13.25□□□□□ -0.29
CD44-224ENST00000526669 KLHL35Q6PF15 583 aa13.25□□□□□ -0.29
CD44-224ENST00000526669 DHRS13Q6UX07 377 aa13.25□□□□□ -0.29
CD44-224ENST00000526669 ZYG11AQ6WRX3 759 aa13.25□□□□□ -0.29
CD44-224ENST00000526669 OR56A3Q8NH54 315 aa13.25□□□□□ -0.29
CD44-224ENST00000526669 ATL1Q8WXF7 558 aa13.25□□□□□ -0.29
CD44-224ENST00000526669 MOCOSQ96EN8 888 aa13.25□□□□□ -0.29
CD44-224ENST00000526669 OR2A14Q96R47 310 aa13.25□□□□□ -0.29
CD44-224ENST00000526669 MIPEPQ99797 713 aa13.25□□□□□ -0.29
CD44-224ENST00000526669 SSU72Q9NP77 194 aaKnown RBP13.25□□□□□ -0.29
CD44-224ENST00000526669 INTS7Q9NVH2 962 aaKnown RBP13.25□□□□□ -0.29
CD44-224ENST00000526669 TAC3Q9UHF0 121 aa13.25□□□□□ -0.29
CD44-224ENST00000526669 KLHL20Q9Y2M5 609 aa13.25□□□□□ -0.29
CD44-224ENST00000526669 SEC16AO15027 2179 aa13.24□□□□□ -0.29
CD44-224ENST00000526669 CCDC189A1A4V9 331 aa13.24□□□□□ -0.29
CD44-224ENST00000526669 WDR91A4D1P6 747 aa13.24□□□□□ -0.29
CD44-224ENST00000526669 C2orf74A8MZ97 194 aa13.24□□□□□ -0.29
CD44-224ENST00000526669 HMGB1P1B2RPK0 211 aaPredicted RBP13.24□□□□□ -0.29
CD44-224ENST00000526669 D6RAR5 112 aa13.24□□□□□ -0.29
CD44-224ENST00000526669 H3BQF6 201 aa13.24□□□□□ -0.29
CD44-224ENST00000526669 NTN3O00634 580 aaPredicted RBP13.24□□□□□ -0.29
CD44-224ENST00000526669 ZW10O43264 779 aa13.24□□□□□ -0.29
CD44-224ENST00000526669 ATP8B1O43520 1251 aa13.24□□□□□ -0.29
CD44-224ENST00000526669 PRICKLE3O43900 615 aaPredicted RBP13.24□□□□□ -0.29
CD44-224ENST00000526669 KLK8O60259 260 aa13.24□□□□□ -0.29
CD44-224ENST00000526669 KCNK5O95279 499 aa13.24□□□□□ -0.29
CD44-224ENST00000526669 GP1BAP07359 652 aa13.24□□□□□ -0.29
CD44-224ENST00000526669 PVRP15151 417 aa13.24□□□□□ -0.29
CD44-224ENST00000526669 CDH3P22223 829 aa13.24□□□□□ -0.29
CD44-224ENST00000526669 ATP5F1P24539 256 aaPredicted RBP13.24□□□□□ -0.29
CD44-224ENST00000526669 EEF1DP29692 281 aaKnown RBP13.24□□□□□ -0.29
CD44-224ENST00000526669 HSD17B2P37059 387 aa13.24□□□□□ -0.29
CD44-224ENST00000526669 SLC6A12P48065 614 aa13.24□□□□□ -0.29
CD44-224ENST00000526669 LSSP48449 732 aa13.24□□□□□ -0.29
CD44-224ENST00000526669 HNMTP50135 292 aa13.24□□□□□ -0.29
CD44-224ENST00000526669 ALDH18A1P54886 795 aaKnown RBP13.24□□□□□ -0.29
CD44-224ENST00000526669 PCLAFQ15004 111 aa13.24□□□□□ -0.29
CD44-224ENST00000526669 SETDB1Q15047 1291 aa13.24□□□□□ -0.29
CD44-224ENST00000526669 CAPN13Q6MZZ7 669 aaPredicted RBP13.24□□□□□ -0.29
CD44-224ENST00000526669 SPESP1Q6UW49 350 aa13.24□□□□□ -0.29
CD44-224ENST00000526669 GLRX5Q86SX6 157 aa13.24□□□□□ -0.29
CD44-224ENST00000526669 THOC6Q86W42 341 aaKnown RBP13.24□□□□□ -0.29
CD44-224ENST00000526669 C10orf107Q8IVU9 208 aa13.24□□□□□ -0.29
CD44-224ENST00000526669 TCAIMQ8N3R3 496 aa13.24□□□□□ -0.29
CD44-224ENST00000526669 SNX31Q8N9S9 440 aa13.24□□□□□ -0.29
CD44-224ENST00000526669 FLVCR1-AS1Q8TAF5 88 aa13.24□□□□□ -0.29
CD44-224ENST00000526669 HMGCLL1Q8TB92 370 aa13.24□□□□□ -0.29
CD44-224ENST00000526669 UBTD2Q8WUN7 234 aa13.24□□□□□ -0.29
CD44-224ENST00000526669 MAP3K3Q99759 626 aa13.24□□□□□ -0.29
CD44-224ENST00000526669 PAIP2Q9BPZ3 127 aaKnown RBP13.24□□□□□ -0.29
CD44-224ENST00000526669 EPB41L1Q9H4G0 881 aa13.24□□□□□ -0.29
CD44-224ENST00000526669 POMT2Q9UKY4 750 aa13.24□□□□□ -0.29
CD44-224ENST00000526669 SLC22A14Q9Y267 594 aa13.24□□□□□ -0.29
CD44-224ENST00000526669 MN1Q10571 1320 aaPredicted RBP13.23□□□□□ -0.29
CD44-224ENST00000526669 STK16O75716 305 aa13.23□□□□□ -0.29
CD44-224ENST00000526669 RASSF9O75901 435 aa13.23□□□□□ -0.29
CD44-224ENST00000526669 CPNE6O95741 557 aa13.23□□□□□ -0.29
CD44-224ENST00000526669 CEACAM1P13688 526 aa13.23□□□□□ -0.29
CD44-224ENST00000526669 CPA3P15088 417 aa13.23□□□□□ -0.29
CD44-224ENST00000526669 PRDX3P30048 256 aaKnown RBP13.23□□□□□ -0.29
CD44-224ENST00000526669 ALDH3A1P30838 453 aa13.23□□□□□ -0.29
CD44-224ENST00000526669 SEPHS1P49903 392 aa13.23□□□□□ -0.29
CD44-224ENST00000526669 INSM1Q01101 510 aaPredicted RBP13.23□□□□□ -0.29
CD44-224ENST00000526669 KIR2DS3Q14952 304 aa13.23□□□□□ -0.29
CD44-224ENST00000526669 SF1Q15637 639 aaKnown RBP13.23□□□□□ -0.29
CD44-224ENST00000526669 CDKL4Q5MAI5 379 aa13.23□□□□□ -0.29
CD44-224ENST00000526669 HHATQ5VTY9 493 aa13.23□□□□□ -0.29
CD44-224ENST00000526669 KIAA1614Q5VZ46 1190 aa13.23□□□□□ -0.29
CD44-224ENST00000526669 ZNF574Q6ZN55 896 aaPredicted RBP13.23□□□□□ -0.29
CD44-224ENST00000526669 B3GNT8Q7Z7M8 397 aa13.23□□□□□ -0.29
CD44-224ENST00000526669 MDM1Q8TC05 714 aa13.23□□□□□ -0.29
CD44-224ENST00000526669 NSUN5Q96P11 429 aaKnown RBP13.23□□□□□ -0.29
CD44-224ENST00000526669 TMEM237Q96Q45 408 aa13.23□□□□□ -0.29
CD44-224ENST00000526669 OR4K3Q96R72 315 aa13.23□□□□□ -0.29
CD44-224ENST00000526669 RTKNQ9BST9 563 aa13.23□□□□□ -0.29
CD44-224ENST00000526669 SGPP1Q9BX95 441 aa13.23□□□□□ -0.29
CD44-224ENST00000526669 PITPNM3Q9BZ71 974 aa13.23□□□□□ -0.29
CD44-224ENST00000526669 CD244Q9BZW8 370 aa13.23□□□□□ -0.29
CD44-224ENST00000526669 SEMA6CQ9H3T2 930 aa13.23□□□□□ -0.29
CD44-224ENST00000526669 CNOT10Q9H9A5 744 aaKnown RBP13.23□□□□□ -0.29
CD44-224ENST00000526669 SLC6A20Q9NP91 592 aa13.23□□□□□ -0.29
CD44-224ENST00000526669 DNAJC11Q9NVH1 559 aa13.23□□□□□ -0.29
CD44-224ENST00000526669 CUEDC1Q9NWM3 386 aaPredicted RBP13.23□□□□□ -0.29
CD44-224ENST00000526669 COPG2Q9UBF2 871 aa13.23□□□□□ -0.29
CD44-224ENST00000526669 OPTCQ9UBM4 332 aa13.23□□□□□ -0.29
CD44-224ENST00000526669 MID2Q9UJV3 735 aa13.23□□□□□ -0.29
CD44-224ENST00000526669 TMCO1Q9UM00 188 aa13.23□□□□□ -0.29
CD44-224ENST00000526669 DYRK1BQ9Y463 629 aa13.23□□□□□ -0.29
CD44-224ENST00000526669 PCDHB11Q9Y5F2 797 aa13.23□□□□□ -0.29
CD44-224ENST00000526669 A0A0J9YY10 115 aa13.22□□□□□ -0.29
CD44-224ENST00000526669 TM9SF1O15321 606 aa13.22□□□□□ -0.29
CD44-224ENST00000526669 NRP2O60462 931 aa13.22□□□□□ -0.29
CD44-224ENST00000526669 PRAMEF10O60809 474 aa13.22□□□□□ -0.29
CD44-224ENST00000526669 IPO13O94829 963 aaKnown RBP13.22□□□□□ -0.29
CD44-224ENST00000526669 ZWINTO95229 277 aa13.22□□□□□ -0.29
CD44-224ENST00000526669 CDH1P12830 882 aa13.22□□□□□ -0.29
CD44-224ENST00000526669 ST6GAL1P15907 406 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms