RNA–Protein interactions for RNA: ENST00000513643.5

RNF4-221, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-221ENST00000513643 CALCOCO2Q13137 446 aa9.33□□□□□ -0.92
RNF4-221ENST00000513643 TBR1Q16650 682 aa9.33□□□□□ -0.92
RNF4-221ENST00000513643 HECTD2Q5U5R9 776 aa9.33□□□□□ -0.92
RNF4-221ENST00000513643 ZNF425Q6IV72 752 aa9.33□□□□□ -0.92
RNF4-221ENST00000513643 RHBDD2Q6NTF9 364 aa9.33□□□□□ -0.92
RNF4-221ENST00000513643 FAM199XQ6PEV8 388 aaPredicted RBP9.33□□□□□ -0.92
RNF4-221ENST00000513643 FIGLAQ6QHK4 219 aa9.33□□□□□ -0.92
RNF4-221ENST00000513643 RELL1Q8IUW5 271 aa9.33□□□□□ -0.92
RNF4-221ENST00000513643 MCATQ8IVS2 390 aaKnown RBP9.33□□□□□ -0.92
RNF4-221ENST00000513643 ZBED8Q8IZ13 594 aa9.33□□□□□ -0.92
RNF4-221ENST00000513643 ARHGEF39Q8N4T4 335 aa9.33□□□□□ -0.92
RNF4-221ENST00000513643 C2orf73Q8N5S3 287 aaPredicted RBP9.33□□□□□ -0.92
RNF4-221ENST00000513643 EXD3Q8N9H8 876 aa9.33□□□□□ -0.92
RNF4-221ENST00000513643 PYROXD1Q8WU10 500 aa9.33□□□□□ -0.92
RNF4-221ENST00000513643 CT55Q8WUE5 264 aa9.33□□□□□ -0.92
RNF4-221ENST00000513643 SMPDL3AQ92484 453 aa9.33□□□□□ -0.92
RNF4-221ENST00000513643 CFAP36Q96G28 342 aa9.33□□□□□ -0.92
RNF4-221ENST00000513643 GBP5Q96PP8 586 aa9.33□□□□□ -0.92
RNF4-221ENST00000513643 RUFY1Q96T51 708 aa9.33□□□□□ -0.92
RNF4-221ENST00000513643 DPH2Q9BQC3 489 aaPredicted RBP9.33□□□□□ -0.92
RNF4-221ENST00000513643 RAB17Q9H0T7 212 aa9.33□□□□□ -0.92
RNF4-221ENST00000513643 SYNPO2LQ9H987 977 aa9.33□□□□□ -0.92
RNF4-221ENST00000513643 LRRC4CQ9HCJ2 640 aa9.33□□□□□ -0.92
RNF4-221ENST00000513643 EURLQ9NYK6 297 aa9.33□□□□□ -0.92
RNF4-221ENST00000513643 LNPEPQ9UIQ6 1025 aa9.33□□□□□ -0.92
RNF4-221ENST00000513643 KCND3Q9UK17 655 aa9.33□□□□□ -0.92
RNF4-221ENST00000513643 ADAMTS6Q9UKP5 1117 aa9.33□□□□□ -0.92
RNF4-221ENST00000513643 IKZF3Q9UKT9 509 aa9.33□□□□□ -0.92
RNF4-221ENST00000513643 PLCL2Q9UPR0 1127 aa9.33□□□□□ -0.92
RNF4-221ENST00000513643 PDE10AQ9Y233 779 aa9.33□□□□□ -0.92
RNF4-221ENST00000513643 KLHL20Q9Y2M5 609 aa9.33□□□□□ -0.92
RNF4-221ENST00000513643 UTP11Q9Y3A2 253 aaKnown RBP9.33□□□□□ -0.92
RNF4-221ENST00000513643 AP1M2Q9Y6Q5 423 aa9.33□□□□□ -0.92
RNF4-221ENST00000513643 FER1L5A0AVI2 2057 aa9.32□□□□□ -0.92
RNF4-221ENST00000513643 TCRBV9S1A1TA0A576 114 aa9.32□□□□□ -0.92
RNF4-221ENST00000513643 E7EQ34 232 aa9.32□□□□□ -0.92
RNF4-221ENST00000513643 ZNF749O43361 778 aa9.32□□□□□ -0.92
RNF4-221ENST00000513643 ZBTB14O43829 449 aa9.32□□□□□ -0.92
RNF4-221ENST00000513643 SRPX2O60687 465 aaPredicted RBP9.32□□□□□ -0.92
RNF4-221ENST00000513643 KLF7O75840 302 aaPredicted RBP9.32□□□□□ -0.92
RNF4-221ENST00000513643 URI1O94763 535 aaPredicted RBP9.32□□□□□ -0.92
RNF4-221ENST00000513643 C8GP07360 202 aa9.32□□□□□ -0.92
RNF4-221ENST00000513643 HBQ1P09105 142 aa9.32□□□□□ -0.92
RNF4-221ENST00000513643 FURINP09958 794 aa9.32□□□□□ -0.92
RNF4-221ENST00000513643 TCN2P20062 427 aa9.32□□□□□ -0.92
RNF4-221ENST00000513643 ITGAXP20702 1163 aa9.32□□□□□ -0.92
RNF4-221ENST00000513643 PSMB5P28074 263 aa9.32□□□□□ -0.92
RNF4-221ENST00000513643 PTPN4P29074 926 aa9.32□□□□□ -0.92
RNF4-221ENST00000513643 DLSTP36957 453 aa9.32□□□□□ -0.92
RNF4-221ENST00000513643 CSRP3P50461 194 aa9.32□□□□□ -0.92
RNF4-221ENST00000513643 PGGT1BP53609 377 aa9.32□□□□□ -0.92
RNF4-221ENST00000513643 PNLIPRP1P54315 467 aa9.32□□□□□ -0.92
RNF4-221ENST00000513643 PLTPP55058 493 aa9.32□□□□□ -0.92
RNF4-221ENST00000513643 SP140Q13342 867 aa9.32□□□□□ -0.92
RNF4-221ENST00000513643 DNASE1L3Q13609 305 aa9.32□□□□□ -0.92
RNF4-221ENST00000513643 SF1Q15637 639 aaKnown RBP9.32□□□□□ -0.92
RNF4-221ENST00000513643 PHKG1Q16816 387 aa9.32□□□□□ -0.92
RNF4-221ENST00000513643 PPP1R3AQ16821 1122 aa9.32□□□□□ -0.92
RNF4-221ENST00000513643 FAM45BPQ6NSW5 357 aa9.32□□□□□ -0.92
RNF4-221ENST00000513643 TLDC1Q6P9B6 456 aa9.32□□□□□ -0.92
RNF4-221ENST00000513643 FAM198BQ6UWH4 519 aa9.32□□□□□ -0.92
RNF4-221ENST00000513643 C3orf62Q6ZUJ4 267 aa9.32□□□□□ -0.92
RNF4-221ENST00000513643 RNF44Q7L0R7 432 aa9.32□□□□□ -0.92
RNF4-221ENST00000513643 PAQR7Q86WK9 346 aa9.32□□□□□ -0.92
RNF4-221ENST00000513643 TMEM126BQ8IUX1 230 aa9.32□□□□□ -0.92
RNF4-221ENST00000513643 ZSCAN1Q8NBB4 408 aa9.32□□□□□ -0.92
RNF4-221ENST00000513643 NOA1Q8NC60 698 aaKnown RBP9.32□□□□□ -0.92
RNF4-221ENST00000513643 FAM45AQ8TCE6 357 aa9.32□□□□□ -0.92
RNF4-221ENST00000513643 ADAMTS17Q8TE56 1095 aa9.32□□□□□ -0.92
RNF4-221ENST00000513643 SKA2Q8WVK7 121 aaPredicted RBP9.32□□□□□ -0.92
RNF4-221ENST00000513643 STARD8Q92502 1023 aa9.32□□□□□ -0.92
RNF4-221ENST00000513643 SLC39A7Q92504 469 aa9.32□□□□□ -0.92
RNF4-221ENST00000513643 KIAA1143Q96AT1 154 aaPredicted RBP9.32□□□□□ -0.92
RNF4-221ENST00000513643 RNF31Q96EP0 1072 aa9.32□□□□□ -0.92
RNF4-221ENST00000513643 PLCD4Q9BRC7 762 aa9.32□□□□□ -0.92
RNF4-221ENST00000513643 SGPP1Q9BX95 441 aa9.32□□□□□ -0.92
RNF4-221ENST00000513643 FUT8Q9BYC5 575 aa9.32□□□□□ -0.92
RNF4-221ENST00000513643 NLNQ9BYT8 704 aa9.32□□□□□ -0.92
RNF4-221ENST00000513643 CHST8Q9H2A9 424 aa9.32□□□□□ -0.92
RNF4-221ENST00000513643 RHOJQ9H4E5 214 aa9.32□□□□□ -0.92
RNF4-221ENST00000513643 ACTR5Q9H9F9 607 aaPredicted RBP9.32□□□□□ -0.92
RNF4-221ENST00000513643 FANCEQ9HB96 536 aa9.32□□□□□ -0.92
RNF4-221ENST00000513643 PARVBQ9HBI1 364 aa9.32□□□□□ -0.92
RNF4-221ENST00000513643 SLC6A20Q9NP91 592 aa9.32□□□□□ -0.92
RNF4-221ENST00000513643 SAYSD1Q9NPB0 183 aa9.32□□□□□ -0.92
RNF4-221ENST00000513643 SLC22A11Q9NSA0 550 aa9.32□□□□□ -0.92
RNF4-221ENST00000513643 INTS7Q9NVH2 962 aaKnown RBP9.32□□□□□ -0.92
RNF4-221ENST00000513643 ZFATQ9P243 1243 aa9.32□□□□□ -0.92
RNF4-221ENST00000513643 ANKMY1Q9P2S6 941 aa9.32□□□□□ -0.92
RNF4-221ENST00000513643 DMGDHQ9UI17 866 aaKnown RBP9.32□□□□□ -0.92
RNF4-221ENST00000513643 TRMT6Q9UJA5 497 aaKnown RBP9.32□□□□□ -0.92
RNF4-221ENST00000513643 NOVA2Q9UNW9 492 aaKnown RBP9.32□□□□□ -0.92
RNF4-221ENST00000513643 MRPS18BQ9Y676 258 aaKnown RBP9.32□□□□□ -0.92
RNF4-221ENST00000513643 KIF2AO00139 706 aaPredicted RBP9.31□□□□□ -0.92
RNF4-221ENST00000513643 ZSCAN9O15535 394 aaPredicted RBP9.31□□□□□ -0.92
RNF4-221ENST00000513643 MAP3K7O43318 606 aa9.31□□□□□ -0.92
RNF4-221ENST00000513643 NRP2O60462 931 aa9.31□□□□□ -0.92
RNF4-221ENST00000513643 CREG1O75629 220 aa9.31□□□□□ -0.92
RNF4-221ENST00000513643 PIAS1O75925 651 aa9.31□□□□□ -0.92
RNF4-221ENST00000513643 OR2B3O76000 313 aa9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms