RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 NHSL2Q5HYW2 709 aa3.71□□□□□ -1.82
HMGB1P28-201ENST00000507778 SPOUT1Q5T280 376 aaKnown RBP3.71□□□□□ -1.82
HMGB1P28-201ENST00000507778 C20orf194Q5TEA3 1177 aa3.71□□□□□ -1.82
HMGB1P28-201ENST00000507778 STPG1Q5TH74 334 aa3.71□□□□□ -1.82
HMGB1P28-201ENST00000507778 SLC35E4Q6ICL7 350 aa3.71□□□□□ -1.82
HMGB1P28-201ENST00000507778 ZNF449Q6P9G9 518 aa3.71□□□□□ -1.82
HMGB1P28-201ENST00000507778 RBMS3Q6XE24 437 aaKnown RBP3.71□□□□□ -1.82
HMGB1P28-201ENST00000507778 NRARPQ7Z6K4 114 aa3.71□□□□□ -1.82
HMGB1P28-201ENST00000507778 RTN4RL2Q86UN3 420 aa3.71□□□□□ -1.82
HMGB1P28-201ENST00000507778 ZNF383Q8NA42 475 aa3.71□□□□□ -1.82
HMGB1P28-201ENST00000507778 NOA1Q8NC60 698 aaKnown RBP3.71□□□□□ -1.82
HMGB1P28-201ENST00000507778 OR52N5Q8NH56 324 aa3.71□□□□□ -1.82
HMGB1P28-201ENST00000507778 GRAPLQ8TC17 118 aaPredicted RBP3.71□□□□□ -1.82
HMGB1P28-201ENST00000507778 LRRC8CQ8TDW0 803 aa3.71□□□□□ -1.82
HMGB1P28-201ENST00000507778 EXOC4Q96A65 974 aa3.71□□□□□ -1.82
HMGB1P28-201ENST00000507778 UHRF2Q96PU4 802 aa3.71□□□□□ -1.82
HMGB1P28-201ENST00000507778 ZMYND12Q9H0C1 365 aa3.71□□□□□ -1.82
HMGB1P28-201ENST00000507778 ALDH8A1Q9H2A2 487 aaPredicted RBP3.71□□□□□ -1.82
HMGB1P28-201ENST00000507778 TLE6Q9H808 572 aa3.71□□□□□ -1.82
HMGB1P28-201ENST00000507778 COPS7BQ9H9Q2 264 aaPredicted RBP3.71□□□□□ -1.82
HMGB1P28-201ENST00000507778 ADPRHL2Q9NX46 363 aa3.71□□□□□ -1.82
HMGB1P28-201ENST00000507778 DDX43Q9NXZ2 648 aaKnown RBP3.71□□□□□ -1.82
HMGB1P28-201ENST00000507778 ERAP1Q9NZ08 941 aa3.71□□□□□ -1.82
HMGB1P28-201ENST00000507778 FLRT3Q9NZU0 649 aa3.71□□□□□ -1.82
HMGB1P28-201ENST00000507778 STUB1Q9UNE7 303 aa3.71□□□□□ -1.82
HMGB1P28-201ENST00000507778 PROCRQ9UNN8 238 aa3.71□□□□□ -1.82
HMGB1P28-201ENST00000507778 KCNK7Q9Y2U2 307 aa3.71□□□□□ -1.82
HMGB1P28-201ENST00000507778 SMIM1B2RUZ4 78 aa3.7□□□□□ -1.82
HMGB1P28-201ENST00000507778 PRSS44E7EML9 344 aa3.7□□□□□ -1.82
HMGB1P28-201ENST00000507778 SLC22A2O15244 555 aa3.7□□□□□ -1.82
HMGB1P28-201ENST00000507778 STX6O43752 255 aa3.7□□□□□ -1.82
HMGB1P28-201ENST00000507778 SNX3O60493 162 aa3.7□□□□□ -1.82
HMGB1P28-201ENST00000507778 SLC22A3O75751 556 aa3.7□□□□□ -1.82
HMGB1P28-201ENST00000507778 PGLSO95336 258 aa3.7□□□□□ -1.82
HMGB1P28-201ENST00000507778 TGDSO95455 350 aa3.7□□□□□ -1.82
HMGB1P28-201ENST00000507778 FRMD6-AS1P0C7T7 363 aa3.7□□□□□ -1.82
HMGB1P28-201ENST00000507778 IGHV4-31P0DP07 118 aa3.7□□□□□ -1.82
HMGB1P28-201ENST00000507778 CEACAM8P31997 349 aaPredicted RBP3.7□□□□□ -1.82
HMGB1P28-201ENST00000507778 TCF7P36402 384 aaPredicted RBP3.7□□□□□ -1.82
HMGB1P28-201ENST00000507778 GMPSP49915 693 aaPredicted RBP3.7□□□□□ -1.82
HMGB1P28-201ENST00000507778 VAMP7P51809 220 aa3.7□□□□□ -1.82
HMGB1P28-201ENST00000507778 CLDN15P56746 228 aa3.7□□□□□ -1.82
HMGB1P28-201ENST00000507778 PTENP60484 403 aa3.7□□□□□ -1.82
HMGB1P28-201ENST00000507778 HNRNPA0Q13151 305 aaKnown RBP3.7□□□□□ -1.82
HMGB1P28-201ENST00000507778 NONOQ15233 471 aaKnown RBP eCLIP3.7□□□□□ -1.82
HMGB1P28-201ENST00000507778 PTGISQ16647 500 aa3.7□□□□□ -1.82
HMGB1P28-201ENST00000507778 CDO1Q16878 200 aa3.7□□□□□ -1.82
HMGB1P28-201ENST00000507778 CTU2Q2VPK5 515 aaKnown RBP3.7□□□□□ -1.82
HMGB1P28-201ENST00000507778 ZRANB3Q5FWF4 1079 aa3.7□□□□□ -1.82
HMGB1P28-201ENST00000507778 SLC35D3Q5M8T2 416 aa3.7□□□□□ -1.82
HMGB1P28-201ENST00000507778 TMEM182Q6ZP80 229 aaPredicted RBP3.7□□□□□ -1.82
HMGB1P28-201ENST00000507778 PHLDB2Q86SQ0 1253 aa3.7□□□□□ -1.82
HMGB1P28-201ENST00000507778 TRPT1Q86TN4 253 aaKnown RBP3.7□□□□□ -1.82
HMGB1P28-201ENST00000507778 NR2C2APQ86WQ0 139 aa3.7□□□□□ -1.82
HMGB1P28-201ENST00000507778 KLHL7Q8IXQ5 586 aa3.7□□□□□ -1.82
HMGB1P28-201ENST00000507778 C4orf19Q8IY42 314 aa3.7□□□□□ -1.82
HMGB1P28-201ENST00000507778 FAM9BQ8IZU0 186 aa3.7□□□□□ -1.82
HMGB1P28-201ENST00000507778 GDAP1Q8TB36 358 aa3.7□□□□□ -1.82
HMGB1P28-201ENST00000507778 TRAF3IP1Q8TDR0 691 aaPredicted RBP3.7□□□□□ -1.82
HMGB1P28-201ENST00000507778 DNASE1L2Q92874 299 aa3.7□□□□□ -1.82
HMGB1P28-201ENST00000507778 NODALQ96S42 347 aa3.7□□□□□ -1.82
HMGB1P28-201ENST00000507778 CPVLQ9H3G5 476 aa3.7□□□□□ -1.82
HMGB1P28-201ENST00000507778 FAM207AQ9NSI2 230 aaPredicted RBP3.7□□□□□ -1.82
HMGB1P28-201ENST00000507778 ZFP37Q9Y6Q3 630 aaPredicted RBP3.7□□□□□ -1.82
HMGB1P28-201ENST00000507778 IGHV4-61A0A0C4DH41 118 aa3.69□□□□□ -1.82
HMGB1P28-201ENST00000507778 A0A0G2JLW4 131 aa3.69□□□□□ -1.82
HMGB1P28-201ENST00000507778 C5orf52A6NGY3 159 aa3.69□□□□□ -1.82
HMGB1P28-201ENST00000507778 PI4K2BG5E9Z4 385 aa3.69□□□□□ -1.82
HMGB1P28-201ENST00000507778 IKBKBO14920 756 aa3.69□□□□□ -1.82
HMGB1P28-201ENST00000507778 SLC7A4O43246 635 aa3.69□□□□□ -1.82
HMGB1P28-201ENST00000507778 IGHV4-59P01825 116 aa3.69□□□□□ -1.82
HMGB1P28-201ENST00000507778 EDN1P05305 212 aa3.69□□□□□ -1.82
HMGB1P28-201ENST00000507778 ITGA3P26006 1051 aa3.69□□□□□ -1.82
HMGB1P28-201ENST00000507778 ATP5DP30049 168 aa3.69□□□□□ -1.82
HMGB1P28-201ENST00000507778 SOAT1P35610 550 aa3.69□□□□□ -1.82
HMGB1P28-201ENST00000507778 LINC01547P58512 204 aaPredicted RBP3.69□□□□□ -1.82
HMGB1P28-201ENST00000507778 RASGEF1BQ0VAM2 473 aa3.69□□□□□ -1.82
HMGB1P28-201ENST00000507778 GPR17Q13304 367 aa3.69□□□□□ -1.82
HMGB1P28-201ENST00000507778 RRS1Q15050 365 aaKnown RBP3.69□□□□□ -1.82
HMGB1P28-201ENST00000507778 LCE1AQ5T7P2 110 aa3.69□□□□□ -1.82
HMGB1P28-201ENST00000507778 OR4A47Q6IF82 309 aa3.69□□□□□ -1.82
HMGB1P28-201ENST00000507778 NOTUMQ6P988 496 aa3.69□□□□□ -1.82
HMGB1P28-201ENST00000507778 CEACAM20Q6UY09 585 aa3.69□□□□□ -1.82
HMGB1P28-201ENST00000507778 AMIGO1Q86WK6 493 aa3.69□□□□□ -1.82
HMGB1P28-201ENST00000507778 DCUN1D3Q8IWE4 304 aa3.69□□□□□ -1.82
HMGB1P28-201ENST00000507778 OR10V1Q8NGI7 309 aa3.69□□□□□ -1.82
HMGB1P28-201ENST00000507778 ST6GALNAC6Q969X2 333 aa3.69□□□□□ -1.82
HMGB1P28-201ENST00000507778 PGM2Q96G03 612 aa3.69□□□□□ -1.82
HMGB1P28-201ENST00000507778 BSCL2Q96G97 398 aaPredicted RBP3.69□□□□□ -1.82
HMGB1P28-201ENST00000507778 PARK7Q99497 189 aaKnown RBP3.69□□□□□ -1.82
HMGB1P28-201ENST00000507778 DESI2Q9BSY9 194 aa3.69□□□□□ -1.82
HMGB1P28-201ENST00000507778 MLPHQ9BV36 600 aaPredicted RBP3.69□□□□□ -1.82
HMGB1P28-201ENST00000507778 MTMR12Q9C0I1 747 aa3.69□□□□□ -1.82
HMGB1P28-201ENST00000507778 OR2B2Q9GZK3 357 aa3.69□□□□□ -1.82
HMGB1P28-201ENST00000507778 MINDY3Q9H8M7 445 aa3.69□□□□□ -1.82
HMGB1P28-201ENST00000507778 P4HTMQ9NXG6 502 aa3.69□□□□□ -1.82
HMGB1P28-201ENST00000507778 ZNF624Q9P2J8 865 aaPredicted RBP3.69□□□□□ -1.82
HMGB1P28-201ENST00000507778 ARMCX3Q9UH62 379 aaPredicted RBP3.69□□□□□ -1.82
HMGB1P28-201ENST00000507778 CDH7Q9ULB5 785 aa3.69□□□□□ -1.82
HMGB1P28-201ENST00000507778 TAF1P21675 1872 aa3.69□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms