RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 LYVE1Q9Y5Y7 322 aa10.5□□□□□ -0.73
LIMCH1-205ENST00000503057 TRIM43BA6NCK2 446 aa10.5□□□□□ -0.73
LIMCH1-205ENST00000503057 SAGE2PA6NJ88 616 aa10.5□□□□□ -0.73
LIMCH1-205ENST00000503057 HPRP00739 348 aa10.5□□□□□ -0.73
LIMCH1-205ENST00000503057 ADH5P11766 374 aa10.5□□□□□ -0.73
LIMCH1-205ENST00000503057 CMPK1P30085 196 aa10.5□□□□□ -0.73
LIMCH1-205ENST00000503057 HMGCLP35914 325 aa10.5□□□□□ -0.73
LIMCH1-205ENST00000503057 CDH15P55291 814 aa10.5□□□□□ -0.73
LIMCH1-205ENST00000503057 RAB15P59190 212 aa10.5□□□□□ -0.73
LIMCH1-205ENST00000503057 PTSQ03393 145 aa10.5□□□□□ -0.73
LIMCH1-205ENST00000503057 TRIM32Q13049 653 aa10.5□□□□□ -0.73
LIMCH1-205ENST00000503057 SF1Q15637 639 aaKnown RBP10.5□□□□□ -0.73
LIMCH1-205ENST00000503057 CTC1Q2NKJ3 1217 aa10.5□□□□□ -0.73
LIMCH1-205ENST00000503057 SLC34A3Q8N130 599 aa10.5□□□□□ -0.73
LIMCH1-205ENST00000503057 TRPV1Q8NER1 839 aa10.5□□□□□ -0.73
LIMCH1-205ENST00000503057 PTPN18Q99952 460 aa10.5□□□□□ -0.73
LIMCH1-205ENST00000503057 WDR83Q9BRX9 315 aaKnown RBP10.5□□□□□ -0.73
LIMCH1-205ENST00000503057 CRISPLD1Q9H336 500 aa10.5□□□□□ -0.73
LIMCH1-205ENST00000503057 THUMPD1Q9NXG2 353 aaKnown RBP10.5□□□□□ -0.73
LIMCH1-205ENST00000503057 PCDHGB3Q9Y5G1 929 aa10.5□□□□□ -0.73
LIMCH1-205ENST00000503057 PIPSLA2A3N6 862 aa10.5□□□□□ -0.73
LIMCH1-205ENST00000503057 LRRC14BA6NHZ5 514 aa10.5□□□□□ -0.73
LIMCH1-205ENST00000503057 OR1F1O43749 312 aa10.5□□□□□ -0.73
LIMCH1-205ENST00000503057 MTX2O75431 263 aa10.5□□□□□ -0.73
LIMCH1-205ENST00000503057 CTSEP14091 401 aa10.5□□□□□ -0.73
LIMCH1-205ENST00000503057 RPL34P49207 117 aaKnown RBP10.5□□□□□ -0.73
LIMCH1-205ENST00000503057 ZNF789Q5FWF6 425 aa10.5□□□□□ -0.73
LIMCH1-205ENST00000503057 KIAA1324Q6UXG2 1013 aaKnown RBP10.5□□□□□ -0.73
LIMCH1-205ENST00000503057 AMZ2Q86W34 360 aa10.5□□□□□ -0.73
LIMCH1-205ENST00000503057 C1orf52Q8N6N3 182 aaKnown RBP10.5□□□□□ -0.73
LIMCH1-205ENST00000503057 OLIG1Q8TAK6 271 aa10.5□□□□□ -0.73
LIMCH1-205ENST00000503057 RPF2Q9H7B2 306 aaKnown RBP10.5□□□□□ -0.73
LIMCH1-205ENST00000503057 SYNDIG1Q9H7V2 258 aa10.5□□□□□ -0.73
LIMCH1-205ENST00000503057 KAT8Q9H7Z6 458 aaKnown RBP10.5□□□□□ -0.73
LIMCH1-205ENST00000503057 KLHL1Q9NR64 748 aa10.5□□□□□ -0.73
LIMCH1-205ENST00000503057 TDP1Q9NUW8 608 aa10.5□□□□□ -0.73
LIMCH1-205ENST00000503057 A0A096LPI6 279 aa10.49□□□□□ -0.73
LIMCH1-205ENST00000503057 A0A1W2PRB8 838 aa10.49□□□□□ -0.73
LIMCH1-205ENST00000503057 C2orf78A6NCI8 922 aa10.49□□□□□ -0.73
LIMCH1-205ENST00000503057 CLDN25C9JDP6 229 aa10.49□□□□□ -0.73
LIMCH1-205ENST00000503057 SLC22A1O15245 554 aa10.49□□□□□ -0.73
LIMCH1-205ENST00000503057 BMP7P18075 431 aa10.49□□□□□ -0.73
LIMCH1-205ENST00000503057 EFNA1P20827 205 aaPredicted RBP10.49□□□□□ -0.73
LIMCH1-205ENST00000503057 LMAN2Q12907 356 aa10.49□□□□□ -0.73
LIMCH1-205ENST00000503057 TAB1Q15750 504 aa10.49□□□□□ -0.73
LIMCH1-205ENST00000503057 ZNF57Q68EA5 555 aaPredicted RBP10.49□□□□□ -0.73
LIMCH1-205ENST00000503057 DENND5AQ6IQ26 1287 aa10.49□□□□□ -0.73
LIMCH1-205ENST00000503057 MZT2BQ6NZ67 158 aa10.49□□□□□ -0.73
LIMCH1-205ENST00000503057 PXYLP1Q8TE99 480 aa10.49□□□□□ -0.73
LIMCH1-205ENST00000503057 XAGE5Q8WWM1 108 aa10.49□□□□□ -0.73
LIMCH1-205ENST00000503057 PTERQ96BW5 349 aa10.49□□□□□ -0.73
LIMCH1-205ENST00000503057 ZBED6CLQ96FA7 236 aaPredicted RBP10.49□□□□□ -0.73
LIMCH1-205ENST00000503057 FBXL20Q96IG2 436 aa10.49□□□□□ -0.73
LIMCH1-205ENST00000503057 SLC35A5Q9BS91 424 aa10.49□□□□□ -0.73
LIMCH1-205ENST00000503057 C11orf84Q9BUA3 381 aaPredicted RBP10.49□□□□□ -0.73
LIMCH1-205ENST00000503057 TOR4AQ9NXH8 423 aa10.49□□□□□ -0.73
LIMCH1-205ENST00000503057 MSRAQ9UJ68 235 aa10.49□□□□□ -0.73
LIMCH1-205ENST00000503057 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP10.49□□□□□ -0.73
LIMCH1-205ENST00000503057 LOC285095A0A1B0GVY8 99 aa10.49□□□□□ -0.73
LIMCH1-205ENST00000503057 PABPC4LP0CB38 370 aaKnown RBP10.49□□□□□ -0.73
LIMCH1-205ENST00000503057 ARSFP54793 590 aa10.49□□□□□ -0.73
LIMCH1-205ENST00000503057 HSPB3Q12988 150 aa10.49□□□□□ -0.73
LIMCH1-205ENST00000503057 LIPJQ5W064 366 aa10.49□□□□□ -0.73
LIMCH1-205ENST00000503057 ZNF773Q6PK81 442 aa10.49□□□□□ -0.73
LIMCH1-205ENST00000503057 CACTIN-AS1Q8N1I8 211 aa10.49□□□□□ -0.73
LIMCH1-205ENST00000503057 GPATCH1Q9BRR8 931 aaKnown RBP10.49□□□□□ -0.73
LIMCH1-205ENST00000503057 TM9SF3Q9HD45 589 aa10.49□□□□□ -0.73
LIMCH1-205ENST00000503057 TMEM9Q9P0T7 183 aa10.49□□□□□ -0.73
LIMCH1-205ENST00000503057 B4GALT6Q9UBX8 382 aa10.49□□□□□ -0.73
LIMCH1-205ENST00000503057 TBC1D3DA0A087WVF3 549 aa10.49□□□□□ -0.73
LIMCH1-205ENST00000503057 TBC1D3IA0A087WXS9 549 aa10.49□□□□□ -0.73
LIMCH1-205ENST00000503057 TBC1D3EA0A087X179 549 aa10.49□□□□□ -0.73
LIMCH1-205ENST00000503057 TBC1D3KA0A087X1G2 549 aa10.49□□□□□ -0.73
LIMCH1-205ENST00000503057 TBC1D3FA6NER0 549 aaPredicted RBP10.49□□□□□ -0.73
LIMCH1-205ENST00000503057 TBC1D3LB9A6J9 549 aa10.49□□□□□ -0.73
LIMCH1-205ENST00000503057 AIREO43918 545 aa10.49□□□□□ -0.73
LIMCH1-205ENST00000503057 STX11O75558 287 aa10.49□□□□□ -0.73
LIMCH1-205ENST00000503057 TBC1D3HP0C7X1 549 aa10.49□□□□□ -0.73
LIMCH1-205ENST00000503057 TYRP14679 529 aa10.49□□□□□ -0.73
LIMCH1-205ENST00000503057 FEN1P39748 380 aaKnown RBP10.49□□□□□ -0.73
LIMCH1-205ENST00000503057 BDKRB1P46663 353 aa10.49□□□□□ -0.73
LIMCH1-205ENST00000503057 TUBA3CQ13748 450 aa10.49□□□□□ -0.73
LIMCH1-205ENST00000503057 SMU1Q2TAY7 513 aa10.49□□□□□ -0.73
LIMCH1-205ENST00000503057 TBC1D3GQ6DHY5 549 aa10.49□□□□□ -0.73
LIMCH1-205ENST00000503057 TBC1D3CQ6IPX1 549 aa10.49□□□□□ -0.73
LIMCH1-205ENST00000503057 PSRC1Q6PGN9 363 aaPredicted RBP10.49□□□□□ -0.73
LIMCH1-205ENST00000503057 TBC1D3Q8IZP1 549 aaPredicted RBP10.49□□□□□ -0.73
LIMCH1-205ENST00000503057 ADAMTS15Q8TE58 950 aa10.49□□□□□ -0.73
LIMCH1-205ENST00000503057 ISL2Q96A47 359 aa10.49□□□□□ -0.73
LIMCH1-205ENST00000503057 HERC2P3Q9BVR0 1158 aa10.49□□□□□ -0.73
LIMCH1-205ENST00000503057 C20orf27Q9GZN8 174 aa10.49□□□□□ -0.73
LIMCH1-205ENST00000503057 CALML5Q9NZT1 146 aa10.49□□□□□ -0.73
LIMCH1-205ENST00000503057 ITGB1BP2Q9UKP3 347 aa10.49□□□□□ -0.73
LIMCH1-205ENST00000503057 OAS3Q9Y6K5 1087 aaKnown RBP10.49□□□□□ -0.73
LIMCH1-205ENST00000503057 GSAPA4D1B5 854 aa10.49□□□□□ -0.73
LIMCH1-205ENST00000503057 LDB2O43679 373 aa10.49□□□□□ -0.73
LIMCH1-205ENST00000503057 PRMT3O60678 531 aa10.49□□□□□ -0.73
LIMCH1-205ENST00000503057 EIF2S1P05198 315 aaKnown RBP10.49□□□□□ -0.73
LIMCH1-205ENST00000503057 GJA1P17302 382 aa10.49□□□□□ -0.73
LIMCH1-205ENST00000503057 FPR1P21462 350 aa10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms