RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 EMCNQ9ULC0 261 aa11.49□□□□□ -0.57
CUX1-210ENST00000497815 GRID1Q9ULK0 1009 aa11.49□□□□□ -0.57
CUX1-210ENST00000497815 CLCA2Q9UQC9 943 aa11.49□□□□□ -0.57
CUX1-210ENST00000497815 PCDHB11Q9Y5F2 797 aa11.49□□□□□ -0.57
CUX1-210ENST00000497815 ENTPD2Q9Y5L3 495 aa11.49□□□□□ -0.57
CUX1-210ENST00000497815 MN1Q10571 1320 aaPredicted RBP11.49□□□□□ -0.57
CUX1-210ENST00000497815 A0A0J9YY10 115 aa11.48□□□□□ -0.57
CUX1-210ENST00000497815 TLCD2A6NGC4 264 aa11.48□□□□□ -0.57
CUX1-210ENST00000497815 SLC9B1P1A6NJY1 282 aa11.48□□□□□ -0.57
CUX1-210ENST00000497815 MAP2K7O14733 419 aa11.48□□□□□ -0.57
CUX1-210ENST00000497815 CCNT2O60583 730 aaKnown RBP11.48□□□□□ -0.57
CUX1-210ENST00000497815 WDR47O94967 919 aa11.48□□□□□ -0.57
CUX1-210ENST00000497815 C9P02748 559 aa11.48□□□□□ -0.57
CUX1-210ENST00000497815 SBK3P0C264 359 aa11.48□□□□□ -0.57
CUX1-210ENST00000497815 THRAP10827 490 aa11.48□□□□□ -0.57
CUX1-210ENST00000497815 MTHFD2P13995 350 aa11.48□□□□□ -0.57
CUX1-210ENST00000497815 JUPP14923 745 aa11.48□□□□□ -0.57
CUX1-210ENST00000497815 TAC1P20366 129 aa11.48□□□□□ -0.57
CUX1-210ENST00000497815 LSSP48449 732 aa11.48□□□□□ -0.57
CUX1-210ENST00000497815 HNMTP50135 292 aa11.48□□□□□ -0.57
CUX1-210ENST00000497815 FOXC1Q12948 553 aa11.48□□□□□ -0.57
CUX1-210ENST00000497815 CLPPQ16740 277 aaPredicted RBP11.48□□□□□ -0.57
CUX1-210ENST00000497815 ISXQ2M1V0 245 aa11.48□□□□□ -0.57
CUX1-210ENST00000497815 PTCHD3Q3KNS1 767 aa11.48□□□□□ -0.57
CUX1-210ENST00000497815 PRAMEF13Q5VWM6 474 aa11.48□□□□□ -0.57
CUX1-210ENST00000497815 SLITRK4Q8IW52 837 aa11.48□□□□□ -0.57
CUX1-210ENST00000497815 TCAIMQ8N3R3 496 aa11.48□□□□□ -0.57
CUX1-210ENST00000497815 TMEM151AQ8N4L1 468 aa11.48□□□□□ -0.57
CUX1-210ENST00000497815 GOLGA6L1Q8N7Z2 621 aa11.48□□□□□ -0.57
CUX1-210ENST00000497815 PTGR2Q8N8N7 351 aaPredicted RBP11.48□□□□□ -0.57
CUX1-210ENST00000497815 OR2A1Q8NGT9 310 aa11.48□□□□□ -0.57
CUX1-210ENST00000497815 OR56A3Q8NH54 315 aa11.48□□□□□ -0.57
CUX1-210ENST00000497815 ADAMTS14Q8WXS8 1223 aa11.48□□□□□ -0.57
CUX1-210ENST00000497815 ARL8AQ96BM9 186 aa11.48□□□□□ -0.57
CUX1-210ENST00000497815 PHF21BQ96EK2 531 aa11.48□□□□□ -0.57
CUX1-210ENST00000497815 TMEM74Q96NL1 305 aa11.48□□□□□ -0.57
CUX1-210ENST00000497815 DPYSL5Q9BPU6 564 aa11.48□□□□□ -0.57
CUX1-210ENST00000497815 TMEM79Q9BSE2 394 aa11.48□□□□□ -0.57
CUX1-210ENST00000497815 SLC22A14Q9Y267 594 aa11.48□□□□□ -0.57
CUX1-210ENST00000497815 PTPRZ1P23471 2315 aaPredicted RBP11.47□□□□□ -0.57
CUX1-210ENST00000497815 IGHV5-51A0A0C4DH38 117 aa11.47□□□□□ -0.57
CUX1-210ENST00000497815 CCDC189A1A4V9 331 aa11.47□□□□□ -0.57
CUX1-210ENST00000497815 LRRC14BA6NHZ5 514 aa11.47□□□□□ -0.57
CUX1-210ENST00000497815 HYAL3O43820 417 aaPredicted RBP11.47□□□□□ -0.57
CUX1-210ENST00000497815 PRICKLE3O43900 615 aaPredicted RBP11.47□□□□□ -0.57
CUX1-210ENST00000497815 PLIN3O60664 434 aa11.47□□□□□ -0.57
CUX1-210ENST00000497815 PRAMEF10O60809 474 aa11.47□□□□□ -0.57
CUX1-210ENST00000497815 PROCP04070 461 aa11.47□□□□□ -0.57
CUX1-210ENST00000497815 ST6GAL1P15907 406 aa11.47□□□□□ -0.57
CUX1-210ENST00000497815 CMPK1P30085 196 aa11.47□□□□□ -0.57
CUX1-210ENST00000497815 SLC6A12P48065 614 aa11.47□□□□□ -0.57
CUX1-210ENST00000497815 ARL4DP49703 201 aa11.47□□□□□ -0.57
CUX1-210ENST00000497815 ALDH18A1P54886 795 aaKnown RBP11.47□□□□□ -0.57
CUX1-210ENST00000497815 MAGOHP61326 146 aaKnown RBP11.47□□□□□ -0.57
CUX1-210ENST00000497815 ZFP36L1Q07352 338 aaKnown RBP11.47□□□□□ -0.57
CUX1-210ENST00000497815 TARDBPQ13148 414 aaKnown RBP eCLIP11.47□□□□□ -0.579e-7■■■■□ 26.1
CUX1-210ENST00000497815 SLC5A12Q1EHB4 618 aa11.47□□□□□ -0.57
CUX1-210ENST00000497815 CCDC153Q494R4 210 aa11.47□□□□□ -0.57
CUX1-210ENST00000497815 TNFAIP8L3Q5GJ75 292 aa11.47□□□□□ -0.57
CUX1-210ENST00000497815 CDKL4Q5MAI5 379 aa11.47□□□□□ -0.57
CUX1-210ENST00000497815 KIAA1614Q5VZ46 1190 aa11.47□□□□□ -0.57
CUX1-210ENST00000497815 ICE2Q659A1 982 aa11.47□□□□□ -0.57
CUX1-210ENST00000497815 FOXR1Q6PIV2 292 aa11.47□□□□□ -0.57
CUX1-210ENST00000497815 DGLUCYQ7Z3D6 616 aa11.47□□□□□ -0.57
CUX1-210ENST00000497815 THOC6Q86W42 341 aaKnown RBP11.47□□□□□ -0.57
CUX1-210ENST00000497815 SNX31Q8N9S9 440 aa11.47□□□□□ -0.57
CUX1-210ENST00000497815 ARMC2Q8NEN0 867 aa11.47□□□□□ -0.57
CUX1-210ENST00000497815 OR2L3Q8NG85 312 aa11.47□□□□□ -0.57
CUX1-210ENST00000497815 TCP10LQ8TDR4 215 aa11.47□□□□□ -0.57
CUX1-210ENST00000497815 FAM111AQ96PZ2 611 aa11.47□□□□□ -0.57
CUX1-210ENST00000497815 OR4K3Q96R72 315 aa11.47□□□□□ -0.57
CUX1-210ENST00000497815 CD180Q99467 661 aa11.47□□□□□ -0.57
CUX1-210ENST00000497815 SGPP1Q9BX95 441 aa11.47□□□□□ -0.57
CUX1-210ENST00000497815 TWSG1Q9GZX9 223 aa11.47□□□□□ -0.57
CUX1-210ENST00000497815 ACBD3Q9H3P7 528 aa11.47□□□□□ -0.57
CUX1-210ENST00000497815 CNOT10Q9H9A5 744 aaKnown RBP11.47□□□□□ -0.57
CUX1-210ENST00000497815 MRPS30Q9NP92 439 aaKnown RBP11.47□□□□□ -0.57
CUX1-210ENST00000497815 KCNK9Q9NPC2 374 aa11.47□□□□□ -0.57
CUX1-210ENST00000497815 INTS7Q9NVH2 962 aaKnown RBP11.47□□□□□ -0.57
CUX1-210ENST00000497815 SOHLH2Q9NX45 425 aa11.47□□□□□ -0.57
CUX1-210ENST00000497815 MKS1Q9NXB0 559 aa11.47□□□□□ -0.57
CUX1-210ENST00000497815 SLC17A7Q9P2U7 560 aa11.47□□□□□ -0.57
CUX1-210ENST00000497815 PTBP2Q9UKA9 531 aaKnown RBP11.47□□□□□ -0.57
CUX1-210ENST00000497815 SH2B3Q9UQQ2 575 aa11.47□□□□□ -0.57
CUX1-210ENST00000497815 ASB1Q9Y576 335 aa11.47□□□□□ -0.57
CUX1-210ENST00000497815 A8MT66 165 aa11.46□□□□□ -0.57
CUX1-210ENST00000497815 TARM1B6A8C7 271 aa11.46□□□□□ -0.57
CUX1-210ENST00000497815 TYROBPO43914 113 aa11.46□□□□□ -0.57
CUX1-210ENST00000497815 DLX3O60479 287 aa11.46□□□□□ -0.57
CUX1-210ENST00000497815 STK16O75716 305 aa11.46□□□□□ -0.57
CUX1-210ENST00000497815 IPO13O94829 963 aaKnown RBP11.46□□□□□ -0.57
CUX1-210ENST00000497815 CCNDBP1O95273 360 aa11.46□□□□□ -0.57
CUX1-210ENST00000497815 SIX3O95343 332 aaPredicted RBP11.46□□□□□ -0.57
CUX1-210ENST00000497815 MYL2P10916 166 aa11.46□□□□□ -0.57
CUX1-210ENST00000497815 NPPBP16860 134 aa11.46□□□□□ -0.57
CUX1-210ENST00000497815 MAGP20916 626 aa11.46□□□□□ -0.57
CUX1-210ENST00000497815 CCND1P24385 295 aa11.46□□□□□ -0.57
CUX1-210ENST00000497815 EEF1DP29692 281 aaKnown RBP11.46□□□□□ -0.57
CUX1-210ENST00000497815 PRDX1Q06830 199 aaKnown RBP11.46□□□□□ -0.57
CUX1-210ENST00000497815 KCNAB1Q14722 419 aa11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms