RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 SP140Q13342 867 aa7.77□□□□□ -1.17
USP40-216ENST00000485943 FASTKD3Q14CZ7 662 aaKnown RBP7.77□□□□□ -1.17
USP40-216ENST00000485943 ZNF800Q2TB10 664 aaPredicted RBP eCLIP7.77□□□□□ -1.174e-6■□□□□ 10.9
USP40-216ENST00000485943 ACSBG2Q5FVE4 666 aa7.77□□□□□ -1.17
USP40-216ENST00000485943 GRTP1Q5TC63 336 aa7.77□□□□□ -1.17
USP40-216ENST00000485943 C19orf48Q6RUI8 117 aa7.77□□□□□ -1.17
USP40-216ENST00000485943 C6orf15Q6UXA7 325 aaPredicted RBP7.77□□□□□ -1.17
USP40-216ENST00000485943 ZNF574Q6ZN55 896 aaPredicted RBP7.77□□□□□ -1.17
USP40-216ENST00000485943 MICALCLQ6ZW33 695 aa7.77□□□□□ -1.17
USP40-216ENST00000485943 ZNF572Q7Z3I7 529 aaPredicted RBP7.77□□□□□ -1.17
USP40-216ENST00000485943 UNC5BQ8IZJ1 945 aa7.77□□□□□ -1.17
USP40-216ENST00000485943 NLGN4XQ8N0W4 816 aa7.77□□□□□ -1.17
USP40-216ENST00000485943 ZNF655Q8N720 491 aaPredicted RBP7.77□□□□□ -1.17
USP40-216ENST00000485943 C19orf47Q8N9M1 422 aaKnown RBP7.77□□□□□ -1.17
USP40-216ENST00000485943 NLGN4YQ8NFZ3 816 aaPredicted RBP7.77□□□□□ -1.17
USP40-216ENST00000485943 OR2L8Q8NGY9 312 aa7.77□□□□□ -1.17
USP40-216ENST00000485943 OR8K5Q8NH50 307 aa7.77□□□□□ -1.17
USP40-216ENST00000485943 FBF1Q8TES7 1133 aa7.77□□□□□ -1.17
USP40-216ENST00000485943 SMPDL3AQ92484 453 aa7.77□□□□□ -1.17
USP40-216ENST00000485943 EXT2Q93063 718 aa7.77□□□□□ -1.17
USP40-216ENST00000485943 TCTN2Q96GX1 697 aa7.77□□□□□ -1.17
USP40-216ENST00000485943 BIRC8Q96P09 236 aa7.77□□□□□ -1.17
USP40-216ENST00000485943 CYTH2Q99418 400 aa7.77□□□□□ -1.17
USP40-216ENST00000485943 NDC1Q9BTX1 674 aa7.77□□□□□ -1.17
USP40-216ENST00000485943 ACAT2Q9BWD1 397 aa7.77□□□□□ -1.17
USP40-216ENST00000485943 RHOJQ9H4E5 214 aa7.77□□□□□ -1.17
USP40-216ENST00000485943 GPN2Q9H9Y4 310 aaPredicted RBP7.77□□□□□ -1.17
USP40-216ENST00000485943 CCDC177Q9NQR7 707 aaPredicted RBP7.77□□□□□ -1.17
USP40-216ENST00000485943 FBXO8Q9NRD0 319 aa7.77□□□□□ -1.17
USP40-216ENST00000485943 KLHL42Q9P2K6 505 aa7.77□□□□□ -1.17
USP40-216ENST00000485943 DKK4Q9UBT3 224 aa7.77□□□□□ -1.17
USP40-216ENST00000485943 CTNNAL1Q9UBT7 734 aa7.77□□□□□ -1.17
USP40-216ENST00000485943 G3BP2Q9UN86 482 aaKnown RBP7.77□□□□□ -1.17
USP40-216ENST00000485943 ICKQ9UPZ9 632 aa7.77□□□□□ -1.17
USP40-216ENST00000485943 RUVBL2Q9Y230 463 aaKnown RBP7.77□□□□□ -1.17
USP40-216ENST00000485943 B3GALT1Q9Y5Z6 326 aa7.77□□□□□ -1.17
USP40-216ENST00000485943 KCNMB2Q9Y691 235 aa7.77□□□□□ -1.17
USP40-216ENST00000485943 NFS1Q9Y697 457 aa7.77□□□□□ -1.17
USP40-216ENST00000485943 URB1O60287 2271 aaKnown RBP7.76□□□□□ -1.17
USP40-216ENST00000485943 A0A087WUV0 522 aaPredicted RBP7.76□□□□□ -1.17
USP40-216ENST00000485943 IGHV5-51A0A0C4DH38 117 aa7.76□□□□□ -1.17
USP40-216ENST00000485943 EXOC1LA0A1B0GW35 172 aa7.76□□□□□ -1.17
USP40-216ENST00000485943 TCRBV9S1A1TA0A576 114 aa7.76□□□□□ -1.17
USP40-216ENST00000485943 SRRM3A6NNA2 597 aaPredicted RBP7.76□□□□□ -1.17
USP40-216ENST00000485943 E7ESA3 106 aa7.76□□□□□ -1.17
USP40-216ENST00000485943 POC1B-GALNT4F8VUJ3 575 aa7.76□□□□□ -1.17
USP40-216ENST00000485943 BTN3A3O00478 584 aa7.76□□□□□ -1.17
USP40-216ENST00000485943 CLGNO14967 610 aa7.76□□□□□ -1.17
USP40-216ENST00000485943 RAD1O60671 282 aa7.76□□□□□ -1.17
USP40-216ENST00000485943 CPNE3O75131 537 aaKnown RBP7.76□□□□□ -1.17
USP40-216ENST00000485943 OR2B3O76000 313 aa7.76□□□□□ -1.17
USP40-216ENST00000485943 KRT38O76015 456 aa7.76□□□□□ -1.17
USP40-216ENST00000485943 KIAA0754O94854 1291 aa7.76□□□□□ -1.17
USP40-216ENST00000485943 GUCA1CO95843 209 aa7.76□□□□□ -1.17
USP40-216ENST00000485943 AHSGP02765 367 aa7.76□□□□□ -1.17
USP40-216ENST00000485943 ANXA5P08758 320 aa7.76□□□□□ -1.17
USP40-216ENST00000485943 PIM1P11309 404 aaPredicted RBP7.76□□□□□ -1.17
USP40-216ENST00000485943 CCND1P24385 295 aa7.76□□□□□ -1.17
USP40-216ENST00000485943 ACADLP28330 430 aa7.76□□□□□ -1.17
USP40-216ENST00000485943 PKLRP30613 574 aa7.76□□□□□ -1.17
USP40-216ENST00000485943 EIF2S3P41091 472 aaKnown RBP7.76□□□□□ -1.17
USP40-216ENST00000485943 KPNA2P52292 529 aaKnown RBP7.76□□□□□ -1.17
USP40-216ENST00000485943 PDX1P52945 283 aa7.76□□□□□ -1.17
USP40-216ENST00000485943 PNLIPRP1P54315 467 aa7.76□□□□□ -1.17
USP40-216ENST00000485943 ITGA1P56199 1179 aa7.76□□□□□ -1.17
USP40-216ENST00000485943 POU4F1Q01851 419 aa7.76□□□□□ -1.17
USP40-216ENST00000485943 KCNAB1Q14722 419 aa7.76□□□□□ -1.17
USP40-216ENST00000485943 ARHGAP19Q14CB8 494 aa7.76□□□□□ -1.17
USP40-216ENST00000485943 KYNUQ16719 465 aa7.76□□□□□ -1.17
USP40-216ENST00000485943 ZNF789Q5FWF6 425 aa7.76□□□□□ -1.17
USP40-216ENST00000485943 ARHGAP40Q5TG30 622 aa7.76□□□□□ -1.17
USP40-216ENST00000485943 STEAP4Q687X5 459 aa7.76□□□□□ -1.17
USP40-216ENST00000485943 CAPN13Q6MZZ7 669 aaPredicted RBP7.76□□□□□ -1.17
USP40-216ENST00000485943 TRMT10BQ6PF06 316 aaKnown RBP7.76□□□□□ -1.17
USP40-216ENST00000485943 PAQR3Q6TCH7 311 aa7.76□□□□□ -1.17
USP40-216ENST00000485943 IGF2-ASQ6U949 168 aa7.76□□□□□ -1.17
USP40-216ENST00000485943 PIWIL4Q7Z3Z4 852 aaKnown RBP7.76□□□□□ -1.17
USP40-216ENST00000485943 TMPRSS9Q7Z410 1059 aa7.76□□□□□ -1.17
USP40-216ENST00000485943 ARHGAP22Q7Z5H3 698 aa7.76□□□□□ -1.17
USP40-216ENST00000485943 GALNT7Q86SF2 657 aa7.76□□□□□ -1.17
USP40-216ENST00000485943 ZFAND4Q86XD8 727 aa7.76□□□□□ -1.17
USP40-216ENST00000485943 VRK3Q8IV63 474 aa7.76□□□□□ -1.17
USP40-216ENST00000485943 CNTN4Q8IWV2 1026 aa7.76□□□□□ -1.17
USP40-216ENST00000485943 CD200R1Q8TD46 325 aa7.76□□□□□ -1.17
USP40-216ENST00000485943 UBLCP1Q8WVY7 318 aaPredicted RBP7.76□□□□□ -1.17
USP40-216ENST00000485943 DLG3Q92796 817 aa7.76□□□□□ -1.17
USP40-216ENST00000485943 MR1Q95460 341 aa7.76□□□□□ -1.17
USP40-216ENST00000485943 SCYL1Q96KG9 808 aa7.76□□□□□ -1.17
USP40-216ENST00000485943 CCDC138Q96M89 665 aa7.76□□□□□ -1.17
USP40-216ENST00000485943 IL17FQ96PD4 163 aa7.76□□□□□ -1.17
USP40-216ENST00000485943 CCNL2Q96S94 520 aaPredicted RBP7.76□□□□□ -1.17
USP40-216ENST00000485943 MIPEPQ99797 713 aa7.76□□□□□ -1.17
USP40-216ENST00000485943 C17orf62Q9BQA9 187 aa7.76□□□□□ -1.17
USP40-216ENST00000485943 YIPF2Q9BWQ6 316 aa7.76□□□□□ -1.17
USP40-216ENST00000485943 PCBD2Q9H0N5 130 aa7.76□□□□□ -1.17
USP40-216ENST00000485943 CNOT10Q9H9A5 744 aaKnown RBP7.76□□□□□ -1.17
USP40-216ENST00000485943 SMYD2Q9NRG4 433 aa7.76□□□□□ -1.17
USP40-216ENST00000485943 WWOXQ9NZC7 414 aa7.76□□□□□ -1.17
USP40-216ENST00000485943 TAC3Q9UHF0 121 aa7.76□□□□□ -1.17
USP40-216ENST00000485943 NFU1Q9UMS0 254 aa7.76□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms