RNA–Protein interactions for RNA: ENST00000468545.1

TMEM39A-204, Transcript of transmembrane protein 39A, humanhuman

TSL 4

Gene TMEM39A, Length 575 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-204ENST00000468545 LRRC6Q86X45 466 aa4.02□□□□□ -1.77
TMEM39A-204ENST00000468545 PQLC1Q8N2U9 271 aa4.02□□□□□ -1.77
TMEM39A-204ENST00000468545 SPEM1Q8N4L4 309 aa4.02□□□□□ -1.77
TMEM39A-204ENST00000468545 GPATCH11Q8N954 259 aa4.02□□□□□ -1.77
TMEM39A-204ENST00000468545 OR2I1PQ8NGU4 316 aa4.02□□□□□ -1.77
TMEM39A-204ENST00000468545 GABPB2Q8TAK5 448 aaPredicted RBP4.02□□□□□ -1.77
TMEM39A-204ENST00000468545 SLC44A1Q8WWI5 657 aa4.02□□□□□ -1.77
TMEM39A-204ENST00000468545 JPH3Q8WXH2 748 aaPredicted RBP4.02□□□□□ -1.77
TMEM39A-204ENST00000468545 SNX19Q92543 992 aa4.02□□□□□ -1.77
TMEM39A-204ENST00000468545 TBRG4Q969Z0 631 aaKnown RBP eCLIP4.02□□□□□ -1.773e-6■■■■□ 20.9
TMEM39A-204ENST00000468545 RAB7BQ96AH8 199 aa4.02□□□□□ -1.77
TMEM39A-204ENST00000468545 FAM136AQ96C01 138 aa4.02□□□□□ -1.77
TMEM39A-204ENST00000468545 NUS1Q96E22 293 aa4.02□□□□□ -1.77
TMEM39A-204ENST00000468545 DCUN1D1Q96GG9 259 aa4.02□□□□□ -1.77
TMEM39A-204ENST00000468545 ELMO2Q96JJ3 720 aa4.02□□□□□ -1.77
TMEM39A-204ENST00000468545 LENG8Q96PV6 779 aaPredicted RBP4.02□□□□□ -1.77
TMEM39A-204ENST00000468545 MCCC1Q96RQ3 725 aaPredicted RBP4.02□□□□□ -1.77
TMEM39A-204ENST00000468545 LYSMD1Q96S90 227 aa4.02□□□□□ -1.77
TMEM39A-204ENST00000468545 NDNQ99608 321 aa4.02□□□□□ -1.77
TMEM39A-204ENST00000468545 KLF6Q99612 283 aaPredicted RBP4.02□□□□□ -1.77
TMEM39A-204ENST00000468545 FAM167BQ9BTA0 163 aa4.02□□□□□ -1.77
TMEM39A-204ENST00000468545 GPR174Q9BXC1 333 aa4.02□□□□□ -1.77
TMEM39A-204ENST00000468545 SLC17A9Q9BYT1 436 aa4.02□□□□□ -1.77
TMEM39A-204ENST00000468545 ROPN1BQ9BZX4 212 aaPredicted RBP4.02□□□□□ -1.77
TMEM39A-204ENST00000468545 BTBD1Q9H0C5 482 aa4.02□□□□□ -1.77
TMEM39A-204ENST00000468545 MANSC1Q9H8J5 431 aa4.02□□□□□ -1.77
TMEM39A-204ENST00000468545 ROPN1Q9HAT0 212 aaPredicted RBP4.02□□□□□ -1.77
TMEM39A-204ENST00000468545 TMBIM4Q9HC24 238 aa4.02□□□□□ -1.77
TMEM39A-204ENST00000468545 SARS2Q9NP81 518 aaKnown RBP4.02□□□□□ -1.77
TMEM39A-204ENST00000468545 KCNK9Q9NPC2 374 aa4.02□□□□□ -1.77
TMEM39A-204ENST00000468545 FZD3Q9NPG1 666 aa4.02□□□□□ -1.77
TMEM39A-204ENST00000468545 IL26Q9NPH9 171 aa4.02□□□□□ -1.77
TMEM39A-204ENST00000468545 ITM2CQ9NQX7 267 aa4.02□□□□□ -1.77
TMEM39A-204ENST00000468545 MBNL1Q9NR56 388 aaKnown RBP4.02□□□□□ -1.77
TMEM39A-204ENST00000468545 LANCL2Q9NS86 450 aa4.02□□□□□ -1.77
TMEM39A-204ENST00000468545 MOCS1Q9NZB8 636 aa4.02□□□□□ -1.77
TMEM39A-204ENST00000468545 VPS18Q9P253 973 aa4.02□□□□□ -1.77
TMEM39A-204ENST00000468545 SLC24A2Q9UI40 661 aa4.02□□□□□ -1.77
TMEM39A-204ENST00000468545 MOSPD1Q9UJG1 213 aa4.02□□□□□ -1.77
TMEM39A-204ENST00000468545 APPL1Q9UKG1 709 aa4.02□□□□□ -1.77
TMEM39A-204ENST00000468545 FBXO5Q9UKT4 447 aa4.02□□□□□ -1.77
TMEM39A-204ENST00000468545 SLC39A10Q9ULF5 831 aa4.02□□□□□ -1.77
TMEM39A-204ENST00000468545 PNMA8BQ9ULN7 279 aaPredicted RBP4.02□□□□□ -1.77
TMEM39A-204ENST00000468545 CA5BQ9Y2D0 317 aa4.02□□□□□ -1.77
TMEM39A-204ENST00000468545 TMEM98Q9Y2Y6 226 aa4.02□□□□□ -1.77
TMEM39A-204ENST00000468545 PSAT1Q9Y617 370 aa4.02□□□□□ -1.77
TMEM39A-204ENST00000468545 NFS1Q9Y697 457 aa4.02□□□□□ -1.77
TMEM39A-204ENST00000468545 SZT2Q5T011 3432 aa4.02□□□□□ -1.77
TMEM39A-204ENST00000468545 ANKRD36A6QL64 1941 aa4.01□□□□□ -1.77
TMEM39A-204ENST00000468545 KIAA1549LQ6ZVL6 1849 aa4.01□□□□□ -1.77
TMEM39A-204ENST00000468545 IQANK1A0A1B0GTG1 560 aa4.01□□□□□ -1.77
TMEM39A-204ENST00000468545 IQCF5A8MTL0 148 aa4.01□□□□□ -1.77
TMEM39A-204ENST00000468545 AREL1O15033 823 aa4.01□□□□□ -1.77
TMEM39A-204ENST00000468545 SCAMP1O15126 338 aa4.01□□□□□ -1.77
TMEM39A-204ENST00000468545 PFDN6O15212 129 aa4.01□□□□□ -1.77
TMEM39A-204ENST00000468545 PLRG1O43660 514 aaKnown RBP4.01□□□□□ -1.77
TMEM39A-204ENST00000468545 OR1I1O60431 355 aa4.01□□□□□ -1.77
TMEM39A-204ENST00000468545 KRT38O76015 456 aa4.01□□□□□ -1.77
TMEM39A-204ENST00000468545 RHOBTB1O94844 696 aa4.01□□□□□ -1.77
TMEM39A-204ENST00000468545 SLC25A14O95258 325 aaPredicted RBP4.01□□□□□ -1.77
TMEM39A-204ENST00000468545 TRIM16O95361 564 aa4.01□□□□□ -1.77
TMEM39A-204ENST00000468545 APBB3O95704 486 aa4.01□□□□□ -1.77
TMEM39A-204ENST00000468545 SEMA4FO95754 770 aa4.01□□□□□ -1.77
TMEM39A-204ENST00000468545 SYF2O95926 243 aaKnown RBP4.01□□□□□ -1.77
TMEM39A-204ENST00000468545 SCGB1D2O95969 90 aa4.01□□□□□ -1.77
TMEM39A-204ENST00000468545 C1QAP02745 245 aa4.01□□□□□ -1.77
TMEM39A-204ENST00000468545 SNRPAP09012 282 aaKnown RBP4.01□□□□□ -1.77
TMEM39A-204ENST00000468545 GM2AP17900 193 aa4.01□□□□□ -1.77
TMEM39A-204ENST00000468545 CHRM3P20309 590 aa4.01□□□□□ -1.77
TMEM39A-204ENST00000468545 MSH3P20585 1137 aa4.01□□□□□ -1.77
TMEM39A-204ENST00000468545 GABRB3P28472 473 aa4.01□□□□□ -1.77
TMEM39A-204ENST00000468545 TYK2P29597 1187 aa4.01□□□□□ -1.77
TMEM39A-204ENST00000468545 CD6P30203 668 aa4.01□□□□□ -1.77
TMEM39A-204ENST00000468545 OXTRP30559 389 aa4.01□□□□□ -1.77
TMEM39A-204ENST00000468545 AKT1P31749 480 aa4.01□□□□□ -1.77
TMEM39A-204ENST00000468545 FOXN2P32314 431 aa4.01□□□□□ -1.77
TMEM39A-204ENST00000468545 HPDP32754 393 aaPredicted RBP4.01□□□□□ -1.77
TMEM39A-204ENST00000468545 MSX2P35548 267 aaPredicted RBP4.01□□□□□ -1.77
TMEM39A-204ENST00000468545 PPARGP37231 505 aaPredicted RBP4.01□□□□□ -1.77
TMEM39A-204ENST00000468545 GP5P40197 560 aa4.01□□□□□ -1.77
TMEM39A-204ENST00000468545 SLC6A9P48067 706 aa4.01□□□□□ -1.77
TMEM39A-204ENST00000468545 CD151P48509 253 aa4.01□□□□□ -1.77
TMEM39A-204ENST00000468545 SERPINB9P50453 376 aa4.01□□□□□ -1.77
TMEM39A-204ENST00000468545 SUOXP51687 545 aa4.01□□□□□ -1.77
TMEM39A-204ENST00000468545 ADPRHP54922 357 aa4.01□□□□□ -1.77
TMEM39A-204ENST00000468545 SLC12A2P55011 1212 aa4.01□□□□□ -1.77
TMEM39A-204ENST00000468545 CSE1LP55060 971 aaKnown RBP4.01□□□□□ -1.77
TMEM39A-204ENST00000468545 PER3P56645 1201 aa4.01□□□□□ -1.77
TMEM39A-204ENST00000468545 CLDN2P57739 230 aa4.01□□□□□ -1.77
TMEM39A-204ENST00000468545 MAGOHP61326 146 aaKnown RBP4.01□□□□□ -1.77
TMEM39A-204ENST00000468545 RPS21P63220 83 aaKnown RBP4.01□□□□□ -1.77
TMEM39A-204ENST00000468545 ACVR1Q04771 509 aa4.01□□□□□ -1.77
TMEM39A-204ENST00000468545 PLP2Q04941 152 aa4.01□□□□□ -1.77
TMEM39A-204ENST00000468545 ZBTB16Q05516 673 aa4.01□□□□□ -1.77
TMEM39A-204ENST00000468545 FOXL1Q12952 345 aa4.01□□□□□ -1.77
TMEM39A-204ENST00000468545 MRPL49Q13405 166 aaKnown RBP4.01□□□□□ -1.77
TMEM39A-204ENST00000468545 ITGA9Q13797 1035 aa4.01□□□□□ -1.77
TMEM39A-204ENST00000468545 PDE1CQ14123 709 aaPredicted RBP4.01□□□□□ -1.77
TMEM39A-204ENST00000468545 WSCD2Q2TBF2 565 aa4.01□□□□□ -1.77
TMEM39A-204ENST00000468545 USP39Q53GS9 565 aaKnown RBP4.01□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms