RNA–Protein interactions for RNA: ENST00000443046.5

HMGN1-208, Transcript of high mobility group nucleosome binding domain 1, human

TSL 3

Gene HMGN1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HMGN1-208	ENST00000443046	SELENOS	Q9BQE4	189 aa		13.73	□□□□□ -0.21
HMGN1-208	ENST00000443046	INTS7	Q9NVH2	962 aa	Known RBP	13.73	□□□□□ -0.21
HMGN1-208	ENST00000443046	SMARCAL1	Q9NZC9	954 aa		13.73	□□□□□ -0.21
HMGN1-208	ENST00000443046	ZNF282	Q9UDV7	671 aa	Predicted RBP	13.73	□□□□□ -0.21
HMGN1-208	ENST00000443046	C3orf18	Q9UK00	162 aa		13.73	□□□□□ -0.21
HMGN1-208	ENST00000443046	IGHV1-45	A0A0A0MS14	117 aa		13.72	□□□□□ -0.21
HMGN1-208	ENST00000443046	HYKK	A2RU49	373 aa		13.72	□□□□□ -0.21
HMGN1-208	ENST00000443046	SPOP	O43791	374 aa		13.72	□□□□□ -0.21
HMGN1-208	ENST00000443046	SLC19A2	O60779	497 aa		13.72	□□□□□ -0.21
HMGN1-208	ENST00000443046	ZRANB2	O95218	330 aa	Known RBP eCLIP	13.72	□□□□□ -0.21	6e-7	■■□□□ 12.1
HMGN1-208	ENST00000443046	FKBP9	O95302	570 aa		13.72	□□□□□ -0.21
HMGN1-208	ENST00000443046	OCA2	Q04671	838 aa		13.72	□□□□□ -0.21
HMGN1-208	ENST00000443046	RBPJ	Q06330	500 aa		13.72	□□□□□ -0.21
HMGN1-208	ENST00000443046	SPARCL1	Q14515	664 aa		13.72	□□□□□ -0.21
HMGN1-208	ENST00000443046	C3AR1	Q16581	482 aa		13.72	□□□□□ -0.21
HMGN1-208	ENST00000443046	WASHC2D	Q5SRD0	308 aa		13.72	□□□□□ -0.21
HMGN1-208	ENST00000443046	KCTD11	Q693B1	232 aa		13.72	□□□□□ -0.21
HMGN1-208	ENST00000443046	PRMT9	Q6P2P2	845 aa		13.72	□□□□□ -0.21
HMGN1-208	ENST00000443046		Q6ZPB1	254 aa	Predicted RBP	13.72	□□□□□ -0.21
HMGN1-208	ENST00000443046	CDH24	Q86UP0	819 aa		13.72	□□□□□ -0.21
HMGN1-208	ENST00000443046	SLC22A15	Q8IZD6	547 aa		13.72	□□□□□ -0.21
HMGN1-208	ENST00000443046	MTFMT	Q96DP5	389 aa	Known RBP	13.72	□□□□□ -0.21
HMGN1-208	ENST00000443046	TREX2	Q9BQ50	279 aa	Predicted RBP	13.72	□□□□□ -0.21
HMGN1-208	ENST00000443046	CSTF2T	Q9H0L4	616 aa	Known RBP eCLIP	13.72	□□□□□ -0.21
HMGN1-208	ENST00000443046	ALG6	Q9Y672	507 aa		13.72	□□□□□ -0.21
HMGN1-208	ENST00000443046	GTF3C1	Q12789	2109 aa		13.72	□□□□□ -0.21
HMGN1-208	ENST00000443046	LOC102723996	A0A087X1L8	192 aa		13.71	□□□□□ -0.21
HMGN1-208	ENST00000443046	MROH6	A6NGR9	719 aa		13.71	□□□□□ -0.21
HMGN1-208	ENST00000443046		H7C0C1	242 aa		13.71	□□□□□ -0.21
HMGN1-208	ENST00000443046	AKR1B10	O60218	316 aa		13.71	□□□□□ -0.21
HMGN1-208	ENST00000443046	PRAMEF2	O60811	474 aa		13.71	□□□□□ -0.21
HMGN1-208	ENST00000443046	CLDN14	O95500	239 aa		13.71	□□□□□ -0.21
HMGN1-208	ENST00000443046	F10	P00742	488 aa		13.71	□□□□□ -0.21
HMGN1-208	ENST00000443046	CELA2A	P08217	269 aa		13.71	□□□□□ -0.21
HMGN1-208	ENST00000443046	ATP5O	P48047	213 aa		13.71	□□□□□ -0.21
HMGN1-208	ENST00000443046	SMS	P52788	366 aa		13.71	□□□□□ -0.21
HMGN1-208	ENST00000443046	HADHB	P55084	474 aa	Known RBP	13.71	□□□□□ -0.21
HMGN1-208	ENST00000443046	VSX2	P58304	361 aa	Predicted RBP	13.71	□□□□□ -0.21
HMGN1-208	ENST00000443046	PRPSAP1	Q14558	356 aa		13.71	□□□□□ -0.21
HMGN1-208	ENST00000443046	FRMPD2B	Q6IN97	320 aa		13.71	□□□□□ -0.21
HMGN1-208	ENST00000443046	HIBCH	Q6NVY1	386 aa	Predicted RBP	13.71	□□□□□ -0.21
HMGN1-208	ENST00000443046	VRK3	Q8IV63	474 aa		13.71	□□□□□ -0.21
HMGN1-208	ENST00000443046	C2orf73	Q8N5S3	287 aa	Predicted RBP	13.71	□□□□□ -0.21
HMGN1-208	ENST00000443046	OR8K1	Q8NGG5	319 aa		13.71	□□□□□ -0.21
HMGN1-208	ENST00000443046	STYX	Q8WUJ0	223 aa		13.71	□□□□□ -0.21
HMGN1-208	ENST00000443046	IL17F	Q96PD4	163 aa		13.71	□□□□□ -0.21
HMGN1-208	ENST00000443046	GBP4	Q96PP9	640 aa		13.71	□□□□□ -0.21
HMGN1-208	ENST00000443046	PPP1R2P1	Q96PQ5	205 aa		13.71	□□□□□ -0.21
HMGN1-208	ENST00000443046	ENKD1	Q9H0I2	346 aa		13.71	□□□□□ -0.21
HMGN1-208	ENST00000443046	CAMSAP3	Q9P1Y5	1249 aa	Predicted RBP	13.71	□□□□□ -0.21
HMGN1-208	ENST00000443046	SH3BGRL2	Q9UJC5	107 aa		13.71	□□□□□ -0.21
HMGN1-208	ENST00000443046	PCDHGB6	Q9Y5F9	930 aa		13.71	□□□□□ -0.21
HMGN1-208	ENST00000443046	SCN2A	Q99250	2005 aa		13.7	□□□□□ -0.22
HMGN1-208	ENST00000443046	LOC105369274	A0A096LPK9	316 aa		13.7	□□□□□ -0.22
HMGN1-208	ENST00000443046	LOC102723532	A0A0G2JNH3	316 aa		13.7	□□□□□ -0.22
HMGN1-208	ENST00000443046	OR5H15	A6NDH6	313 aa		13.7	□□□□□ -0.22
HMGN1-208	ENST00000443046	IDS	B3KWA1	339 aa		13.7	□□□□□ -0.22
HMGN1-208	ENST00000443046	RASGRF2	O14827	1237 aa		13.7	□□□□□ -0.22
HMGN1-208	ENST00000443046	GPC4	O75487	556 aa		13.7	□□□□□ -0.22
HMGN1-208	ENST00000443046	OR56A5	P0C7T3	313 aa		13.7	□□□□□ -0.22
HMGN1-208	ENST00000443046	CCR7	P32248	378 aa		13.7	□□□□□ -0.22
HMGN1-208	ENST00000443046	FOXN2	P32314	431 aa		13.7	□□□□□ -0.22
HMGN1-208	ENST00000443046	MARCKSL1	P49006	195 aa		13.7	□□□□□ -0.22
HMGN1-208	ENST00000443046	CASP6	P55212	293 aa		13.7	□□□□□ -0.22
HMGN1-208	ENST00000443046	SF1	Q15637	639 aa	Known RBP	13.7	□□□□□ -0.22
HMGN1-208	ENST00000443046	SYTL3	Q4VX76	610 aa		13.7	□□□□□ -0.22
HMGN1-208	ENST00000443046	CNST	Q6PJW8	725 aa		13.7	□□□□□ -0.22
HMGN1-208	ENST00000443046	ARHGEF18	Q6ZSZ5	1173 aa		13.7	□□□□□ -0.22
HMGN1-208	ENST00000443046	LUZP1	Q86V48	1076 aa		13.7	□□□□□ -0.22
HMGN1-208	ENST00000443046	DCUN1D3	Q8IWE4	304 aa		13.7	□□□□□ -0.22
HMGN1-208	ENST00000443046	PRSS58	Q8IYP2	241 aa		13.7	□□□□□ -0.22
HMGN1-208	ENST00000443046	OR4N4	Q8N0Y3	316 aa		13.7	□□□□□ -0.22
HMGN1-208	ENST00000443046	THAP3	Q8WTV1	239 aa	Predicted RBP	13.7	□□□□□ -0.22
HMGN1-208	ENST00000443046	C10orf90	Q96M02	699 aa		13.7	□□□□□ -0.22
HMGN1-208	ENST00000443046	SPATA13	Q96N96	652 aa		13.7	□□□□□ -0.22
HMGN1-208	ENST00000443046	CHP1	Q99653	195 aa		13.7	□□□□□ -0.22
HMGN1-208	ENST00000443046	HEMGN	Q9BXL5	484 aa		13.7	□□□□□ -0.22
HMGN1-208	ENST00000443046	ZNF700	Q9H0M5	742 aa		13.7	□□□□□ -0.22
HMGN1-208	ENST00000443046	MCCC2	Q9HCC0	563 aa		13.7	□□□□□ -0.22
HMGN1-208	ENST00000443046	SPTLC3	Q9NUV7	552 aa		13.7	□□□□□ -0.22
HMGN1-208	ENST00000443046	TINAG	Q9UJW2	476 aa		13.7	□□□□□ -0.22
HMGN1-208	ENST00000443046	INTU	Q9ULD6	942 aa		13.7	□□□□□ -0.22
HMGN1-208	ENST00000443046	MEMO1	Q9Y316	297 aa		13.7	□□□□□ -0.22
HMGN1-208	ENST00000443046	UCHL5	Q9Y5K5	329 aa	Known RBP eCLIP	13.7	□□□□□ -0.22	1e-14	■■■□□ 15.4
HMGN1-208	ENST00000443046	ABCA2	Q9BZC7	2435 aa		13.7	□□□□□ -0.22
HMGN1-208	ENST00000443046	OR1I1	O60431	355 aa		13.69	□□□□□ -0.22
HMGN1-208	ENST00000443046	NRP2	O60462	931 aa		13.69	□□□□□ -0.22
HMGN1-208	ENST00000443046	WFS1	O76024	890 aa		13.69	□□□□□ -0.22
HMGN1-208	ENST00000443046	ITGAM	P11215	1152 aa		13.69	□□□□□ -0.22
HMGN1-208	ENST00000443046	TPH1	P17752	444 aa		13.69	□□□□□ -0.22
HMGN1-208	ENST00000443046	EMP2	P54851	167 aa		13.69	□□□□□ -0.22
HMGN1-208	ENST00000443046	EMP3	P54852	163 aa		13.69	□□□□□ -0.22
HMGN1-208	ENST00000443046	PCOLCE	Q15113	449 aa		13.69	□□□□□ -0.22
HMGN1-208	ENST00000443046	PRTG	Q2VWP7	1150 aa		13.69	□□□□□ -0.22
HMGN1-208	ENST00000443046	TMEM205	Q6UW68	189 aa		13.69	□□□□□ -0.22
HMGN1-208	ENST00000443046	UNC5D	Q6UXZ4	953 aa		13.69	□□□□□ -0.22
HMGN1-208	ENST00000443046	RNF44	Q7L0R7	432 aa		13.69	□□□□□ -0.22
HMGN1-208	ENST00000443046	TAX1BP1	Q86VP1	789 aa		13.69	□□□□□ -0.22
HMGN1-208	ENST00000443046	AMER2	Q8N7J2	671 aa		13.69	□□□□□ -0.22
HMGN1-208	ENST00000443046	HMGCLL1	Q8TB92	370 aa		13.69	□□□□□ -0.22

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