RNA–Protein interactions for RNA: ENST00000442151.6

CD44-211, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-211ENST00000442151 TRIM55Q9BYV6 548 aa7.47□□□□□ -1.21
CD44-211ENST00000442151 ILKAPQ9H0C8 392 aaPredicted RBP7.47□□□□□ -1.21
CD44-211ENST00000442151 EPS8L2Q9H6S3 715 aa7.47□□□□□ -1.21
CD44-211ENST00000442151 CHRAC1Q9NRG0 131 aa7.47□□□□□ -1.21
CD44-211ENST00000442151 ENAMQ9NRM1 1142 aa7.47□□□□□ -1.21
CD44-211ENST00000442151 INTS10Q9NVR2 710 aaKnown RBP7.47□□□□□ -1.21
CD44-211ENST00000442151 PIH1D1Q9NWS0 290 aaKnown RBP7.47□□□□□ -1.21
CD44-211ENST00000442151 P4HTMQ9NXG6 502 aa7.47□□□□□ -1.21
CD44-211ENST00000442151 TTC7AQ9ULT0 858 aaPredicted RBP7.47□□□□□ -1.21
CD44-211ENST00000442151 ATMQ13315 3056 aa7.46□□□□□ -1.21
CD44-211ENST00000442151 CFAP46Q8IYW2 2715 aa7.46□□□□□ -1.21
CD44-211ENST00000442151 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP7.46□□□□□ -1.21
CD44-211ENST00000442151 TCRBV7S2A1N4TA0A589 114 aa7.46□□□□□ -1.21
CD44-211ENST00000442151 CLEC18AA5D8T8 446 aa7.46□□□□□ -1.21
CD44-211ENST00000442151 PABPN1LA6NDY0 278 aaKnown RBP7.46□□□□□ -1.21
CD44-211ENST00000442151 OR51F1A6NGY5 319 aa7.46□□□□□ -1.21
CD44-211ENST00000442151 AGPSO00116 658 aa7.46□□□□□ -1.21
CD44-211ENST00000442151 CEP104O60308 925 aa7.46□□□□□ -1.21
CD44-211ENST00000442151 OR1I1O60431 355 aa7.46□□□□□ -1.21
CD44-211ENST00000442151 DNAJB5O75953 348 aa7.46□□□□□ -1.21
CD44-211ENST00000442151 OGNP20774 298 aaKnown RBP7.46□□□□□ -1.21
CD44-211ENST00000442151 MMP11P24347 488 aa7.46□□□□□ -1.21
CD44-211ENST00000442151 HRH2P25021 359 aa7.46□□□□□ -1.21
CD44-211ENST00000442151 CXCR2P25025 360 aa7.46□□□□□ -1.21
CD44-211ENST00000442151 RPA3P35244 121 aaPredicted RBP7.46□□□□□ -1.21
CD44-211ENST00000442151 CSE1LP55060 971 aaKnown RBP7.46□□□□□ -1.21
CD44-211ENST00000442151 ABATP80404 500 aa7.46□□□□□ -1.21
CD44-211ENST00000442151 RELAQ04206 551 aa7.46□□□□□ -1.21
CD44-211ENST00000442151 ATP1A4Q13733 1029 aa7.46□□□□□ -1.21
CD44-211ENST00000442151 INPP5JQ15735 1006 aaPredicted RBP7.46□□□□□ -1.21
CD44-211ENST00000442151 NDUFA9Q16795 377 aa7.46□□□□□ -1.21
CD44-211ENST00000442151 MUM1Q2TAK8 710 aa7.46□□□□□ -1.21
CD44-211ENST00000442151 DCAF10Q5QP82 559 aa7.46□□□□□ -1.21
CD44-211ENST00000442151 C1orf189Q5VU69 101 aa7.46□□□□□ -1.21
CD44-211ENST00000442151 GARNL3Q5VVW2 1013 aa7.46□□□□□ -1.21
CD44-211ENST00000442151 FCRL6Q6DN72 434 aa7.46□□□□□ -1.21
CD44-211ENST00000442151 MRPL14Q6P1L8 145 aaKnown RBP7.46□□□□□ -1.21
CD44-211ENST00000442151 CLEC18BQ6UXF7 455 aa7.46□□□□□ -1.21
CD44-211ENST00000442151 TTLL10Q6ZVT0 673 aa7.46□□□□□ -1.21
CD44-211ENST00000442151 PALM2Q8IXS6 379 aa7.46□□□□□ -1.21
CD44-211ENST00000442151 CLEC18CQ8NCF0 446 aa7.46□□□□□ -1.21
CD44-211ENST00000442151 GRK7Q8WTQ7 553 aa7.46□□□□□ -1.21
CD44-211ENST00000442151 SMPDL3AQ92484 453 aa7.46□□□□□ -1.21
CD44-211ENST00000442151 RNF31Q96EP0 1072 aa7.46□□□□□ -1.21
CD44-211ENST00000442151 MVB12AQ96EY5 273 aa7.46□□□□□ -1.21
CD44-211ENST00000442151 PPM1MQ96MI6 270 aa7.46□□□□□ -1.21
CD44-211ENST00000442151 LMF1Q96S06 567 aa7.46□□□□□ -1.21
CD44-211ENST00000442151 KLHL25Q9H0H3 589 aa7.46□□□□□ -1.21
CD44-211ENST00000442151 SLC26A1Q9H2B4 701 aa7.46□□□□□ -1.21
CD44-211ENST00000442151 XAB2Q9HCS7 855 aaKnown RBP7.46□□□□□ -1.21
CD44-211ENST00000442151 ZNF304Q9HCX3 659 aa7.46□□□□□ -1.21
CD44-211ENST00000442151 FAM60AQ9NP50 221 aa7.46□□□□□ -1.21
CD44-211ENST00000442151 CUTCQ9NTM9 273 aa7.46□□□□□ -1.21
CD44-211ENST00000442151 SPHK1Q9NYA1 384 aa7.46□□□□□ -1.21
CD44-211ENST00000442151 SLC2A6Q9UGQ3 507 aa7.46□□□□□ -1.21
CD44-211ENST00000442151 CDC23Q9UJX2 597 aa7.46□□□□□ -1.21
CD44-211ENST00000442151 SOX13Q9UN79 622 aa7.46□□□□□ -1.21
CD44-211ENST00000442151 B3GNT3Q9Y2A9 372 aa7.46□□□□□ -1.21
CD44-211ENST00000442151 KLK4Q9Y5K2 254 aa7.46□□□□□ -1.21
CD44-211ENST00000442151 CAPN6Q9Y6Q1 641 aa7.46□□□□□ -1.21
CD44-211ENST00000442151 HYKKA2RU49 373 aa7.45□□□□□ -1.22
CD44-211ENST00000442151 CTAGE9A4FU28 777 aa7.45□□□□□ -1.22
CD44-211ENST00000442151 FITM1A5D6W6 292 aa7.45□□□□□ -1.22
CD44-211ENST00000442151 SDR42E2A6NKP2 422 aa7.45□□□□□ -1.22
CD44-211ENST00000442151 KLF7O75840 302 aaPredicted RBP7.45□□□□□ -1.22
CD44-211ENST00000442151 C1orf105O95561 183 aa7.45□□□□□ -1.22
CD44-211ENST00000442151 FGGP02679 453 aa7.45□□□□□ -1.22
CD44-211ENST00000442151 PRSS56P0CW18 603 aa7.45□□□□□ -1.22
CD44-211ENST00000442151 ICAM2P13598 275 aa7.45□□□□□ -1.22
CD44-211ENST00000442151 ENO3P13929 434 aaPredicted RBP7.45□□□□□ -1.22
CD44-211ENST00000442151 NR1D1P20393 614 aa7.45□□□□□ -1.22
CD44-211ENST00000442151 MAGP20916 626 aa7.45□□□□□ -1.22
CD44-211ENST00000442151 GABRA4P48169 554 aa7.45□□□□□ -1.22
CD44-211ENST00000442151 EIF3BP55884 814 aaKnown RBP7.45□□□□□ -1.22
CD44-211ENST00000442151 PER3P56645 1201 aa7.45□□□□□ -1.22
CD44-211ENST00000442151 CHAF1BQ13112 559 aa7.45□□□□□ -1.22
CD44-211ENST00000442151 SLC9A5Q14940 896 aa7.45□□□□□ -1.22
CD44-211ENST00000442151 RBBP7Q16576 425 aa7.45□□□□□ -1.22
CD44-211ENST00000442151 TUBB8Q3ZCM7 444 aa7.45□□□□□ -1.22
CD44-211ENST00000442151 NADK2Q4G0N4 442 aa7.45□□□□□ -1.22
CD44-211ENST00000442151 PRAMEF17Q5VTA0 474 aa7.45□□□□□ -1.22
CD44-211ENST00000442151 AGAP7PQ5VUJ5 663 aa7.45□□□□□ -1.22
CD44-211ENST00000442151 PRAMEF13Q5VWM6 474 aa7.45□□□□□ -1.22
CD44-211ENST00000442151 CPZQ66K79 652 aa7.45□□□□□ -1.22
CD44-211ENST00000442151 KIAA0930Q6ICG6 404 aaPredicted RBP7.45□□□□□ -1.22
CD44-211ENST00000442151 LCN10Q6JVE6 187 aa7.45□□□□□ -1.22
CD44-211ENST00000442151 CASC4Q6P4E1 433 aa7.45□□□□□ -1.22
CD44-211ENST00000442151 ZNF534Q76KX8 674 aa7.45□□□□□ -1.22
CD44-211ENST00000442151 PCGF5Q86SE9 256 aa7.45□□□□□ -1.22
CD44-211ENST00000442151 MRGPREQ86SM8 312 aa7.45□□□□□ -1.22
CD44-211ENST00000442151 TRIM73Q86UV7 250 aa7.45□□□□□ -1.22
CD44-211ENST00000442151 OR9A1PQ8NGU1 263 aa7.45□□□□□ -1.22
CD44-211ENST00000442151 MCOLN3Q8TDD5 553 aa7.45□□□□□ -1.22
CD44-211ENST00000442151 SSC4DQ8WTU2 575 aa7.45□□□□□ -1.22
CD44-211ENST00000442151 NAT14Q8WUY8 206 aa7.45□□□□□ -1.22
CD44-211ENST00000442151 RERGQ96A58 199 aaPredicted RBP7.45□□□□□ -1.22
CD44-211ENST00000442151 AGAP4Q96P64 663 aa7.45□□□□□ -1.22
CD44-211ENST00000442151 RUFY1Q96T51 708 aa7.45□□□□□ -1.22
CD44-211ENST00000442151 PCBD2Q9H0N5 130 aa7.45□□□□□ -1.22
CD44-211ENST00000442151 P2RY12Q9H244 342 aa7.45□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms