RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 OR2M4Q96R27 311 aa17.66■□□□□ 0.42
CCDC88C-203ENST00000389856 MYOCQ99972 504 aa17.66■□□□□ 0.42
CCDC88C-203ENST00000389856 ZDHHC5Q9C0B5 715 aa17.66■□□□□ 0.42
CCDC88C-203ENST00000389856 ATG10Q9H0Y0 220 aa17.66■□□□□ 0.42
CCDC88C-203ENST00000389856 PDP2Q9P2J9 529 aa17.66■□□□□ 0.42
CCDC88C-203ENST00000389856 THEGQ9P2T0 379 aa17.66■□□□□ 0.42
CCDC88C-203ENST00000389856 SUFUQ9UMX1 484 aa17.66■□□□□ 0.42
CCDC88C-203ENST00000389856 SLC22A14Q9Y267 594 aa17.66■□□□□ 0.42
CCDC88C-203ENST00000389856 BTRCQ9Y297 605 aa17.66■□□□□ 0.42
CCDC88C-203ENST00000389856 DYRK1BQ9Y463 629 aa17.66■□□□□ 0.42
CCDC88C-203ENST00000389856 GPSM3Q9Y4H4 160 aa17.66■□□□□ 0.42
CCDC88C-203ENST00000389856 KCNE2Q9Y6J6 123 aa17.66■□□□□ 0.42
CCDC88C-203ENST00000389856 PRSS38A1L453 326 aa17.65■□□□□ 0.42
CCDC88C-203ENST00000389856 NRP2O60462 931 aa17.65■□□□□ 0.42
CCDC88C-203ENST00000389856 SLC16A8O95907 504 aa17.65■□□□□ 0.42
CCDC88C-203ENST00000389856 IDO1P14902 403 aa17.65■□□□□ 0.42
CCDC88C-203ENST00000389856 GNPDA1P46926 289 aa17.65■□□□□ 0.42
CCDC88C-203ENST00000389856 PFN3P60673 137 aa17.65■□□□□ 0.42
CCDC88C-203ENST00000389856 MAD2L1Q13257 205 aaPredicted RBP17.65■□□□□ 0.42
CCDC88C-203ENST00000389856 NAE1Q13564 534 aa17.65■□□□□ 0.42
CCDC88C-203ENST00000389856 RPS6KA2Q15349 733 aa17.65■□□□□ 0.42
CCDC88C-203ENST00000389856 SMU1Q2TAY7 513 aa17.65■□□□□ 0.42
CCDC88C-203ENST00000389856 REP15Q6BDI9 236 aa17.65■□□□□ 0.42
CCDC88C-203ENST00000389856 TMEM154Q6P9G4 183 aa17.65■□□□□ 0.42
CCDC88C-203ENST00000389856 GK5Q6ZS86 529 aa17.65■□□□□ 0.42
CCDC88C-203ENST00000389856 TBC1D21Q8IYX1 336 aa17.65■□□□□ 0.42
CCDC88C-203ENST00000389856 CAMKK1Q8N5S9 505 aa17.65■□□□□ 0.42
CCDC88C-203ENST00000389856 L3MBTL4Q8NA19 623 aa17.65■□□□□ 0.42
CCDC88C-203ENST00000389856 OR5K2Q8NHB8 316 aa17.65■□□□□ 0.42
CCDC88C-203ENST00000389856 PPP3R2Q96LZ3 170 aa17.65■□□□□ 0.42
CCDC88C-203ENST00000389856 CDK15Q96Q40 435 aa17.65■□□□□ 0.42
CCDC88C-203ENST00000389856 OSGEPL1Q9H4B0 414 aa17.65■□□□□ 0.42
CCDC88C-203ENST00000389856 ELOVL6Q9H5J4 265 aa17.65■□□□□ 0.42
CCDC88C-203ENST00000389856 WSB2Q9NYS7 404 aaPredicted RBP17.65■□□□□ 0.42
CCDC88C-203ENST00000389856 SPATA7Q9P0W8 599 aa17.65■□□□□ 0.42
CCDC88C-203ENST00000389856 SLC23A2Q9UGH3 650 aa17.65■□□□□ 0.42
CCDC88C-203ENST00000389856 POLG2Q9UHN1 485 aa17.65■□□□□ 0.42
CCDC88C-203ENST00000389856 NDUFAF1Q9Y375 327 aa17.65■□□□□ 0.42
CCDC88C-203ENST00000389856 HEBP2Q9Y5Z4 205 aa17.65■□□□□ 0.42
CCDC88C-203ENST00000389856 STK25O00506 426 aa17.65■□□□□ 0.42
CCDC88C-203ENST00000389856 ACOT8O14734 319 aa17.65■□□□□ 0.42
CCDC88C-203ENST00000389856 CFLARO15519 480 aa17.65■□□□□ 0.42
CCDC88C-203ENST00000389856 PI15O43692 258 aa17.65■□□□□ 0.42
CCDC88C-203ENST00000389856 KIF1CO43896 1103 aaKnown RBP17.65■□□□□ 0.42
CCDC88C-203ENST00000389856 XRCC1P18887 633 aaPredicted RBP17.65■□□□□ 0.42
CCDC88C-203ENST00000389856 ITPKAP23677 461 aa17.65■□□□□ 0.42
CCDC88C-203ENST00000389856 IMPA1P29218 277 aa17.65■□□□□ 0.42
CCDC88C-203ENST00000389856 HNF4AP41235 474 aa17.65■□□□□ 0.42
CCDC88C-203ENST00000389856 HALP42357 657 aa17.65■□□□□ 0.42
CCDC88C-203ENST00000389856 CLCNKAP51800 687 aa17.65■□□□□ 0.42
CCDC88C-203ENST00000389856 IRF8Q02556 426 aa17.65■□□□□ 0.42
CCDC88C-203ENST00000389856 TRIP10Q15642 601 aa17.65■□□□□ 0.42
CCDC88C-203ENST00000389856 SAMD4BQ5PRF9 694 aaKnown RBP17.65■□□□□ 0.42
CCDC88C-203ENST00000389856 C10orf62Q5T681 223 aaPredicted RBP17.65■□□□□ 0.42
CCDC88C-203ENST00000389856 ENPP7Q6UWV6 458 aa17.65■□□□□ 0.42
CCDC88C-203ENST00000389856 ADCY4Q8NFM4 1077 aa17.65■□□□□ 0.42
CCDC88C-203ENST00000389856 MARK4Q96L34 752 aa17.65■□□□□ 0.42
CCDC88C-203ENST00000389856 HHIPQ96QV1 700 aa17.65■□□□□ 0.42
CCDC88C-203ENST00000389856 RAB11FIP5Q9BXF6 653 aa17.65■□□□□ 0.42
CCDC88C-203ENST00000389856 CHRDQ9H2X0 955 aa17.65■□□□□ 0.42
CCDC88C-203ENST00000389856 TUBB1Q9H4B7 451 aa17.65■□□□□ 0.42
CCDC88C-203ENST00000389856 TBC1D17Q9HA65 648 aa17.65■□□□□ 0.42
CCDC88C-203ENST00000389856 CARS2Q9HA77 564 aaKnown RBP17.65■□□□□ 0.42
CCDC88C-203ENST00000389856 SPAG4Q9NPE6 437 aa17.65■□□□□ 0.42
CCDC88C-203ENST00000389856 KLQ9UEF7 1012 aa17.65■□□□□ 0.42
CCDC88C-203ENST00000389856 PCDHGA7Q9Y5G6 932 aa17.65■□□□□ 0.42
CCDC88C-203ENST00000389856 ST14Q9Y5Y6 855 aa17.65■□□□□ 0.42
CCDC88C-203ENST00000389856 A0A1B0GTL3 188 aa17.64■□□□□ 0.41
CCDC88C-203ENST00000389856 ATP6AP2A0A1C7CYW4 349 aa17.64■□□□□ 0.41
CCDC88C-203ENST00000389856 POM121BA6NF01 834 aa17.64■□□□□ 0.41
CCDC88C-203ENST00000389856 MRASO14807 208 aa17.64■□□□□ 0.41
CCDC88C-203ENST00000389856 NDUFS2O75306 463 aa17.64■□□□□ 0.41
CCDC88C-203ENST00000389856 ATP6AP2O75787 350 aa17.64■□□□□ 0.41
CCDC88C-203ENST00000389856 PIM1P11309 404 aaPredicted RBP17.64■□□□□ 0.41
CCDC88C-203ENST00000389856 UQCRBP14927 111 aa17.64■□□□□ 0.41
CCDC88C-203ENST00000389856 RPS9P46781 194 aaKnown RBP17.64■□□□□ 0.41
CCDC88C-203ENST00000389856 HSPA13P48723 471 aa17.64■□□□□ 0.41
CCDC88C-203ENST00000389856 ERVK-8P63133 956 aa17.64■□□□□ 0.41
CCDC88C-203ENST00000389856 PCDH1Q08174 1060 aa17.64■□□□□ 0.41
CCDC88C-203ENST00000389856 TRIM25Q14258 630 aaKnown RBP17.64■□□□□ 0.41
CCDC88C-203ENST00000389856 IMPG1Q17R60 797 aa17.64■□□□□ 0.41
CCDC88C-203ENST00000389856 KIF19Q2TAC6 998 aa17.64■□□□□ 0.41
CCDC88C-203ENST00000389856 C8orf82Q6P1X6 216 aaPredicted RBP17.64■□□□□ 0.41
CCDC88C-203ENST00000389856 RNF111Q6ZNA4 994 aa17.64■□□□□ 0.41
CCDC88C-203ENST00000389856 MIER2Q8N344 545 aa17.64■□□□□ 0.41
CCDC88C-203ENST00000389856 HMGCLL1Q8TB92 370 aa17.64■□□□□ 0.41
CCDC88C-203ENST00000389856 SETD7Q8WTS6 366 aaKnown RBP17.64■□□□□ 0.41
CCDC88C-203ENST00000389856 PYCR2Q96C36 320 aa17.64■□□□□ 0.41
CCDC88C-203ENST00000389856 REPS1Q96D71 796 aa17.64■□□□□ 0.41
CCDC88C-203ENST00000389856 DUS3LQ96G46 650 aaKnown RBP17.64■□□□□ 0.41
CCDC88C-203ENST00000389856 LRGUKQ96M69 825 aa17.64■□□□□ 0.41
CCDC88C-203ENST00000389856 NPAS2Q99743 824 aa17.64■□□□□ 0.41
CCDC88C-203ENST00000389856 HOPXQ9BPY8 73 aaPredicted RBP17.64■□□□□ 0.41
CCDC88C-203ENST00000389856 FOXQ1Q9C009 403 aa17.64■□□□□ 0.41
CCDC88C-203ENST00000389856 PCBD2Q9H0N5 130 aa17.64■□□□□ 0.41
CCDC88C-203ENST00000389856 Q9H521 79 aa17.64■□□□□ 0.41
CCDC88C-203ENST00000389856 CD93Q9NPY3 652 aa17.64■□□□□ 0.41
CCDC88C-203ENST00000389856 CCDC177Q9NQR7 707 aaPredicted RBP17.64■□□□□ 0.41
CCDC88C-203ENST00000389856 CROTQ9UKG9 612 aa17.64■□□□□ 0.41
CCDC88C-203ENST00000389856 DOCK9Q9BZ29 2069 aa17.63■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms