RNA–Protein interactions for RNA: ENST00000334258.9

SYNE3-201, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SYNE3, Length 3,275 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-201ENST00000334258 MIA3Q5JRA6 1907 aa13.4□□□□□ -0.27
SYNE3-201ENST00000334258 OTCP00480 354 aa13.39□□□□□ -0.27
SYNE3-201ENST00000334258 IL6P05231 212 aa13.39□□□□□ -0.27
SYNE3-201ENST00000334258 OR1E1P30953 314 aa13.39□□□□□ -0.27
SYNE3-201ENST00000334258 ACVRL1P37023 503 aa13.39□□□□□ -0.27
SYNE3-201ENST00000334258 TGFBR2P37173 567 aa13.39□□□□□ -0.27
SYNE3-201ENST00000334258 FADDQ13158 208 aa13.39□□□□□ -0.27
SYNE3-201ENST00000334258 KEAP1Q14145 624 aa13.39□□□□□ -0.27
SYNE3-201ENST00000334258 PCBP1Q15365 356 aaKnown RBP eCLIP13.39□□□□□ -0.27
SYNE3-201ENST00000334258 RUNDC3AQ59EK9 446 aa13.39□□□□□ -0.27
SYNE3-201ENST00000334258 PRSS36Q5K4E3 855 aa13.39□□□□□ -0.27
SYNE3-201ENST00000334258 KIAA1614Q5VZ46 1190 aa13.39□□□□□ -0.27
SYNE3-201ENST00000334258 RAP1GAP2Q684P5 730 aa13.39□□□□□ -0.27
SYNE3-201ENST00000334258 CAPN13Q6MZZ7 669 aaPredicted RBP13.39□□□□□ -0.27
SYNE3-201ENST00000334258 AFTPHQ6ULP2 937 aa13.39□□□□□ -0.27
SYNE3-201ENST00000334258 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP13.39□□□□□ -0.27
SYNE3-201ENST00000334258 ULK4Q96C45 1275 aa13.39□□□□□ -0.27
SYNE3-201ENST00000334258 B3GALT6Q96L58 329 aa13.39□□□□□ -0.27
SYNE3-201ENST00000334258 SERPINB11Q96P15 392 aa13.39□□□□□ -0.27
SYNE3-201ENST00000334258 FARSBQ9NSD9 589 aaKnown RBP13.39□□□□□ -0.27
SYNE3-201ENST00000334258 MIOSQ9NXC5 875 aa13.39□□□□□ -0.27
SYNE3-201ENST00000334258 SNX6Q9UNH7 406 aa13.39□□□□□ -0.27
SYNE3-201ENST00000334258 SMIM35A0A1B0GVV1 85 aa13.39□□□□□ -0.27
SYNE3-201ENST00000334258 SSX4O60224 188 aa13.39□□□□□ -0.27
SYNE3-201ENST00000334258 IFNA8P32881 189 aa13.39□□□□□ -0.27
SYNE3-201ENST00000334258 GDF5P43026 501 aa13.39□□□□□ -0.27
SYNE3-201ENST00000334258 TBX4P57082 545 aa13.39□□□□□ -0.27
SYNE3-201ENST00000334258 ACVR1Q04771 509 aa13.39□□□□□ -0.27
SYNE3-201ENST00000334258 EFEMP1Q12805 493 aa13.39□□□□□ -0.27
SYNE3-201ENST00000334258 TYSND1Q2T9J0 566 aa13.39□□□□□ -0.27
SYNE3-201ENST00000334258 LRRTM3Q86VH5 581 aa13.39□□□□□ -0.27
SYNE3-201ENST00000334258 TSPYL5Q86VY4 417 aaPredicted RBP13.39□□□□□ -0.27
SYNE3-201ENST00000334258 SPATA2LQ8IUW3 424 aaPredicted RBP13.39□□□□□ -0.27
SYNE3-201ENST00000334258 PIANPQ8IYJ0 282 aa13.39□□□□□ -0.27
SYNE3-201ENST00000334258 C10orf111Q8N326 155 aa13.39□□□□□ -0.27
SYNE3-201ENST00000334258 CD99L2Q8TCZ2 262 aa13.39□□□□□ -0.27
SYNE3-201ENST00000334258 CLSTN3Q9BQT9 956 aa13.39□□□□□ -0.27
SYNE3-201ENST00000334258 SPON2Q9BUD6 331 aa13.39□□□□□ -0.27
SYNE3-201ENST00000334258 ABCG8Q9H221 673 aa13.39□□□□□ -0.27
SYNE3-201ENST00000334258 RAPGEFL1Q9UHV5 662 aa13.39□□□□□ -0.27
SYNE3-201ENST00000334258 NEUROG3Q9Y4Z2 214 aa13.39□□□□□ -0.27
SYNE3-201ENST00000334258 C2orf81A6NN90 581 aa13.38□□□□□ -0.27
SYNE3-201ENST00000334258 TBKBP1A7MCY6 615 aa13.38□□□□□ -0.27
SYNE3-201ENST00000334258 LOC110117498-PIK3R3F6TDL0 507 aa13.38□□□□□ -0.27
SYNE3-201ENST00000334258 RGS13O14921 159 aa13.38□□□□□ -0.27
SYNE3-201ENST00000334258 AREL1O15033 823 aa13.38□□□□□ -0.27
SYNE3-201ENST00000334258 MUSKO15146 869 aa13.38□□□□□ -0.27
SYNE3-201ENST00000334258 RGS5O15539 181 aa13.38□□□□□ -0.27
SYNE3-201ENST00000334258 ULK1O75385 1050 aa13.38□□□□□ -0.27
SYNE3-201ENST00000334258 CYP7B1O75881 506 aa13.38□□□□□ -0.27
SYNE3-201ENST00000334258 PBX3P40426 434 aa13.38□□□□□ -0.27
SYNE3-201ENST00000334258 GNPDA1P46926 289 aa13.38□□□□□ -0.27
SYNE3-201ENST00000334258 NUDT6P53370 316 aa13.38□□□□□ -0.27
SYNE3-201ENST00000334258 DAB2P98082 770 aa13.38□□□□□ -0.27
SYNE3-201ENST00000334258 ZNF544Q6NX49 715 aa13.38□□□□□ -0.27
SYNE3-201ENST00000334258 ZCCHC8Q6NZY4 707 aaKnown RBP13.38□□□□□ -0.27
SYNE3-201ENST00000334258 SCD5Q86SK9 330 aa13.38□□□□□ -0.27
SYNE3-201ENST00000334258 KBTBD8Q8NFY9 601 aa13.38□□□□□ -0.27
SYNE3-201ENST00000334258 FBLIM1Q8WUP2 373 aa13.38□□□□□ -0.27
SYNE3-201ENST00000334258 IPCEF1Q8WWN9 437 aaPredicted RBP13.38□□□□□ -0.27
SYNE3-201ENST00000334258 C1QTNF3Q9BXJ4 246 aa13.38□□□□□ -0.27
SYNE3-201ENST00000334258 B3GNT4Q9C0J1 378 aa13.38□□□□□ -0.27
SYNE3-201ENST00000334258 NSUN3Q9H649 340 aaKnown RBP13.38□□□□□ -0.27
SYNE3-201ENST00000334258 RUBCNLQ9H714 662 aa13.38□□□□□ -0.27
SYNE3-201ENST00000334258 ADPRHL2Q9NX46 363 aa13.38□□□□□ -0.27
SYNE3-201ENST00000334258 ERVK13-1Q9NX77 482 aa13.38□□□□□ -0.27
SYNE3-201ENST00000334258 TSC2P49815 1807 aa13.38□□□□□ -0.27
SYNE3-201ENST00000334258 NUP214P35658 2090 aaPredicted RBP13.38□□□□□ -0.27
SYNE3-201ENST00000334258 PNMA8CA0A1B0GUJ8 204 aa13.38□□□□□ -0.27
SYNE3-201ENST00000334258 TFECO14948 347 aaPredicted RBP13.38□□□□□ -0.27
SYNE3-201ENST00000334258 HOXC11O43248 304 aaPredicted RBP13.38□□□□□ -0.27
SYNE3-201ENST00000334258 PCDHGA12O60330 932 aa13.38□□□□□ -0.27
SYNE3-201ENST00000334258 TLR5O60602 858 aa13.38□□□□□ -0.27
SYNE3-201ENST00000334258 CRYZL1O95825 349 aa13.38□□□□□ -0.27
SYNE3-201ENST00000334258 VIPP01282 170 aa13.38□□□□□ -0.27
SYNE3-201ENST00000334258 RPLP0P05388 317 aaKnown RBP13.38□□□□□ -0.27
SYNE3-201ENST00000334258 ODC1P11926 461 aa13.38□□□□□ -0.27
SYNE3-201ENST00000334258 S100A3P33764 101 aa13.38□□□□□ -0.27
SYNE3-201ENST00000334258 ATAD3CQ5T2N8 411 aa13.38□□□□□ -0.27
SYNE3-201ENST00000334258 TMEM132CQ8N3T6 1108 aa13.38□□□□□ -0.27
SYNE3-201ENST00000334258 KCNS3Q9BQ31 491 aa13.38□□□□□ -0.27
SYNE3-201ENST00000334258 TMEM246Q9BRR3 403 aa13.38□□□□□ -0.27
SYNE3-201ENST00000334258 IRF2BPLQ9H1B7 796 aa13.38□□□□□ -0.27
SYNE3-201ENST00000334258 OR51E2Q9H255 320 aa13.38□□□□□ -0.27
SYNE3-201ENST00000334258 TRIM39Q9HCM9 518 aa13.38□□□□□ -0.27
SYNE3-201ENST00000334258 SAMD4AQ9UPU9 718 aaKnown RBP13.38□□□□□ -0.27
SYNE3-201ENST00000334258 HSPE1-MOB4S4R3N1 261 aa13.38□□□□□ -0.27
SYNE3-201ENST00000334258 CXCR2P25025 360 aa13.38□□□□□ -0.27
SYNE3-201ENST00000334258 DNAJA1P31689 397 aaKnown RBP13.38□□□□□ -0.27
SYNE3-201ENST00000334258 IDH2P48735 452 aaKnown RBP13.38□□□□□ -0.27
SYNE3-201ENST00000334258 ELP6Q0PNE2 266 aa13.38□□□□□ -0.27
SYNE3-201ENST00000334258 PROX2Q3B8N5 592 aa13.38□□□□□ -0.27
SYNE3-201ENST00000334258 PSAPL1Q6NUJ1 521 aa13.38□□□□□ -0.27
SYNE3-201ENST00000334258 DOK6Q6PKX4 331 aa13.38□□□□□ -0.27
SYNE3-201ENST00000334258 VTCN1Q7Z7D3 282 aa13.38□□□□□ -0.27
SYNE3-201ENST00000334258 NLGN4XQ8N0W4 816 aa13.38□□□□□ -0.27
SYNE3-201ENST00000334258 DNASE1L2Q92874 299 aa13.38□□□□□ -0.27
SYNE3-201ENST00000334258 CDADC1Q9BWV3 514 aa13.38□□□□□ -0.27
SYNE3-201ENST00000334258 REEP1Q9H902 201 aa13.38□□□□□ -0.27
SYNE3-201ENST00000334258 LRTM1Q9HBL6 345 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms