RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 MSRAQ9UJ68 235 aa11.25□□□□□ -0.61
VPS39-201ENST00000318006 TLR6Q9Y2C9 796 aa11.25□□□□□ -0.61
VPS39-201ENST00000318006 NUP98P52948 1817 aa11.25□□□□□ -0.61
VPS39-201ENST00000318006 A8MT66 165 aa11.25□□□□□ -0.61
VPS39-201ENST00000318006 TRIM3O75382 744 aaPredicted RBP11.25□□□□□ -0.61
VPS39-201ENST00000318006 GOT2P00505 430 aaKnown RBP11.25□□□□□ -0.61
VPS39-201ENST00000318006 SLC35G4P0C7Q5 338 aa11.25□□□□□ -0.61
VPS39-201ENST00000318006 RPL17P18621 184 aaKnown RBP11.25□□□□□ -0.61
VPS39-201ENST00000318006 FPR1P21462 350 aa11.25□□□□□ -0.61
VPS39-201ENST00000318006 AP2S1P53680 142 aaPredicted RBP11.25□□□□□ -0.61
VPS39-201ENST00000318006 C2orf80Q0P641 193 aa11.25□□□□□ -0.61
VPS39-201ENST00000318006 RFTN1Q14699 578 aaPredicted RBP11.25□□□□□ -0.61
VPS39-201ENST00000318006 SPRED3Q2MJR0 410 aa11.25□□□□□ -0.61
VPS39-201ENST00000318006 ANKDD1AQ495B1 522 aa11.25□□□□□ -0.61
VPS39-201ENST00000318006 PRSS55Q6UWB4 352 aaPredicted RBP11.25□□□□□ -0.61
VPS39-201ENST00000318006 ZNF615Q8N8J6 731 aa11.25□□□□□ -0.61
VPS39-201ENST00000318006 GLIS1Q8NBF1 620 aa11.25□□□□□ -0.61
VPS39-201ENST00000318006 KLHL6Q8WZ60 621 aa11.25□□□□□ -0.61
VPS39-201ENST00000318006 SLC45A3Q96JT2 553 aa11.25□□□□□ -0.61
VPS39-201ENST00000318006 MUS81Q96NY9 551 aa11.25□□□□□ -0.61
VPS39-201ENST00000318006 MCMBPQ9BTE3 642 aa11.25□□□□□ -0.61
VPS39-201ENST00000318006 CUEDC1Q9NWM3 386 aaPredicted RBP11.25□□□□□ -0.61
VPS39-201ENST00000318006 HPF1Q9NWY4 346 aa11.25□□□□□ -0.61
VPS39-201ENST00000318006 ATPIF1Q9UII2 106 aa11.25□□□□□ -0.61
VPS39-201ENST00000318006 CMAHPQ9Y471 501 aa11.25□□□□□ -0.61
VPS39-201ENST00000318006 A0A0U1RQF3 1178 aa11.25□□□□□ -0.61
VPS39-201ENST00000318006 TMEM233B4DJY2 109 aa11.25□□□□□ -0.61
VPS39-201ENST00000318006 PRODHO43272 600 aa11.25□□□□□ -0.61
VPS39-201ENST00000318006 SAGP10523 405 aaPredicted RBP11.25□□□□□ -0.61
VPS39-201ENST00000318006 ACADLP28330 430 aa11.25□□□□□ -0.61
VPS39-201ENST00000318006 RBM34P42696 430 aaKnown RBP11.25□□□□□ -0.61
VPS39-201ENST00000318006 HCAR3P49019 387 aa11.25□□□□□ -0.61
VPS39-201ENST00000318006 HLCSP50747 726 aa11.25□□□□□ -0.61
VPS39-201ENST00000318006 RAVER1Q8IY67 606 aaKnown RBP11.25□□□□□ -0.61
VPS39-201ENST00000318006 SUSD3Q96L08 255 aa11.25□□□□□ -0.61
VPS39-201ENST00000318006 KCNC2Q96PR1 638 aa11.25□□□□□ -0.61
VPS39-201ENST00000318006 SEZ6LQ9BYH1 1024 aa11.25□□□□□ -0.61
VPS39-201ENST00000318006 OSBPL2Q9H1P3 480 aa11.25□□□□□ -0.61
VPS39-201ENST00000318006 IKZF2Q9UKS7 526 aa11.25□□□□□ -0.61
VPS39-201ENST00000318006 CNOT11Q9UKZ1 510 aaKnown RBP11.25□□□□□ -0.61
VPS39-201ENST00000318006 CPQQ9Y646 472 aa11.25□□□□□ -0.61
VPS39-201ENST00000318006 A0A1W2PP18 115 aa11.24□□□□□ -0.61
VPS39-201ENST00000318006 PER2O15055 1255 aa11.24□□□□□ -0.61
VPS39-201ENST00000318006 FOXD2O60548 495 aaPredicted RBP11.24□□□□□ -0.61
VPS39-201ENST00000318006 RNASEH2AO75792 299 aaKnown RBP11.24□□□□□ -0.61
VPS39-201ENST00000318006 DNAJB1P25685 340 aa11.24□□□□□ -0.61
VPS39-201ENST00000318006 CD97P48960 835 aa11.24□□□□□ -0.61
VPS39-201ENST00000318006 TCEAL1Q15170 157 aa11.24□□□□□ -0.61
VPS39-201ENST00000318006 CAPN13Q6MZZ7 669 aaPredicted RBP11.24□□□□□ -0.61
VPS39-201ENST00000318006 CCBE1Q6UXH8 406 aaPredicted RBP11.24□□□□□ -0.61
VPS39-201ENST00000318006 TAS1R3Q7RTX0 852 aa11.24□□□□□ -0.61
VPS39-201ENST00000318006 RBM23Q86U06 439 aaKnown RBP11.24□□□□□ -0.61
VPS39-201ENST00000318006 LGI4Q8N135 537 aa11.24□□□□□ -0.61
VPS39-201ENST00000318006 RHBGQ9H310 441 aa11.24□□□□□ -0.61
VPS39-201ENST00000318006 XKR8Q9H6D3 395 aa11.24□□□□□ -0.61
VPS39-201ENST00000318006 ELL3Q9HB65 397 aaPredicted RBP11.24□□□□□ -0.61
VPS39-201ENST00000318006 DEC1Q9P2X7 70 aa11.24□□□□□ -0.61
VPS39-201ENST00000318006 CACNG4Q9UBN1 327 aa11.24□□□□□ -0.61
VPS39-201ENST00000318006 ALG5Q9Y673 324 aa11.24□□□□□ -0.61
VPS39-201ENST00000318006 ABHD14A-ACY1A0A1B0GW23 586 aa11.24□□□□□ -0.61
VPS39-201ENST00000318006 M0R233 179 aa11.24□□□□□ -0.61
VPS39-201ENST00000318006 PDPK1O15530 556 aa11.24□□□□□ -0.61
VPS39-201ENST00000318006 CHP2O43745 196 aa11.24□□□□□ -0.61
VPS39-201ENST00000318006 STBD1O95210 358 aa11.24□□□□□ -0.61
VPS39-201ENST00000318006 CTSEP14091 401 aa11.24□□□□□ -0.61
VPS39-201ENST00000318006 ELK4P28324 431 aa11.24□□□□□ -0.61
VPS39-201ENST00000318006 RBBP4Q09028 425 aa11.24□□□□□ -0.61
VPS39-201ENST00000318006 RPA4Q13156 261 aa11.24□□□□□ -0.61
VPS39-201ENST00000318006 ARL14EPQ8N8R7 260 aaPredicted RBP11.24□□□□□ -0.61
VPS39-201ENST00000318006 GATA6Q92908 595 aa11.24□□□□□ -0.61
VPS39-201ENST00000318006 CREB3L1Q96BA8 519 aa11.24□□□□□ -0.61
VPS39-201ENST00000318006 PCYT2Q99447 389 aa11.24□□□□□ -0.61
VPS39-201ENST00000318006 HTATIP2Q9BUP3 242 aa11.24□□□□□ -0.61
VPS39-201ENST00000318006 RC3H2Q9HBD1 1191 aaKnown RBP11.24□□□□□ -0.61
VPS39-201ENST00000318006 CD93Q9NPY3 652 aa11.24□□□□□ -0.61
VPS39-201ENST00000318006 PDCD5O14737 125 aa11.24□□□□□ -0.61
VPS39-201ENST00000318006 OR2B3O76000 313 aa11.24□□□□□ -0.61
VPS39-201ENST00000318006 CDRT1O95170 752 aa11.24□□□□□ -0.61
VPS39-201ENST00000318006 S100A2P29034 98 aa11.24□□□□□ -0.61
VPS39-201ENST00000318006 NUDT6P53370 316 aa11.24□□□□□ -0.61
VPS39-201ENST00000318006 RGS8P57771 180 aaPredicted RBP11.24□□□□□ -0.61
VPS39-201ENST00000318006 GDF6Q6KF10 455 aaPredicted RBP11.24□□□□□ -0.61
VPS39-201ENST00000318006 RTL4Q6ZR62 310 aa11.24□□□□□ -0.61
VPS39-201ENST00000318006 ADGRD2Q7Z7M1 963 aa11.24□□□□□ -0.61
VPS39-201ENST00000318006 MARCH9Q86YJ5 346 aa11.24□□□□□ -0.61
VPS39-201ENST00000318006 CXorf40BQ96DE9 158 aa11.24□□□□□ -0.61
VPS39-201ENST00000318006 C12orf66Q96MD2 445 aa11.24□□□□□ -0.61
VPS39-201ENST00000318006 INMT-MINDY4F8WBC2 141 aa11.24□□□□□ -0.61
VPS39-201ENST00000318006 CCL16O15467 120 aa11.24□□□□□ -0.61
VPS39-201ENST00000318006 SERPINA3P01011 423 aa11.24□□□□□ -0.61
VPS39-201ENST00000318006 CSF2P04141 144 aa11.24□□□□□ -0.61
VPS39-201ENST00000318006 CHRM1P11229 460 aaPredicted RBP11.24□□□□□ -0.61
VPS39-201ENST00000318006 GRIA1P42261 906 aa11.24□□□□□ -0.61
VPS39-201ENST00000318006 RPIAP49247 311 aa11.24□□□□□ -0.61
VPS39-201ENST00000318006 ZNF81P51508 661 aa11.24□□□□□ -0.61
VPS39-201ENST00000318006 PPP1R8Q12972 351 aaKnown RBP11.24□□□□□ -0.61
VPS39-201ENST00000318006 KIAA1324Q6UXG2 1013 aaKnown RBP11.24□□□□□ -0.61
VPS39-201ENST00000318006 AGMOQ6ZNB7 445 aa11.24□□□□□ -0.61
VPS39-201ENST00000318006 PLEKHG7Q6ZR37 379 aa11.24□□□□□ -0.61
VPS39-201ENST00000318006 OTOP2Q7RTS6 562 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 69.6 ms