RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 ISPDA4D126 451 aa15□□□□□ -0.01
SHH-201ENST00000297261 ZSCAN5BA6NJL1 495 aa15□□□□□ -0.01
SHH-201ENST00000297261 MAGEB17A8MXT2 336 aa15□□□□□ -0.01
SHH-201ENST00000297261 PER2O15055 1255 aa15□□□□□ -0.01
SHH-201ENST00000297261 C1RP00736 705 aa15□□□□□ -0.01
SHH-201ENST00000297261 OPN1SWP03999 348 aa15□□□□□ -0.01
SHH-201ENST00000297261 PLA2G16P53816 162 aa15□□□□□ -0.01
SHH-201ENST00000297261 GPR17Q13304 367 aa15□□□□□ -0.01
SHH-201ENST00000297261 PTPRCAPQ14761 206 aa15□□□□□ -0.01
SHH-201ENST00000297261 PARP15Q460N3 678 aa15□□□□□ -0.01
SHH-201ENST00000297261 ZNF678Q5SXM1 525 aa15□□□□□ -0.01
SHH-201ENST00000297261 COLGALT2Q8IYK4 626 aa15□□□□□ -0.01
SHH-201ENST00000297261 ELMOD2Q8IZ81 293 aa15□□□□□ -0.01
SHH-201ENST00000297261 METTL25Q8N6Q8 603 aa15□□□□□ -0.01
SHH-201ENST00000297261 TFAP2CQ92754 450 aa15□□□□□ -0.01
SHH-201ENST00000297261 CEP295NLQ96MC4 621 aa15□□□□□ -0.01
SHH-201ENST00000297261 AARSD1Q9BTE6 412 aaKnown RBP15□□□□□ -0.01
SHH-201ENST00000297261 OSBPL10Q9BXB5 764 aa15□□□□□ -0.01
SHH-201ENST00000297261 MMP27Q9H306 513 aa15□□□□□ -0.01
SHH-201ENST00000297261 TBC1D17Q9HA65 648 aa15□□□□□ -0.01
SHH-201ENST00000297261 KRCC1Q9NPI7 259 aaPredicted RBP15□□□□□ -0.01
SHH-201ENST00000297261 ASAH2Q9NR71 780 aa15□□□□□ -0.01
SHH-201ENST00000297261 ZIM2Q9NZV7 527 aa15□□□□□ -0.01
SHH-201ENST00000297261 SLC25A13Q9UJS0 675 aa15□□□□□ -0.01
SHH-201ENST00000297261 STOML2Q9UJZ1 356 aa15□□□□□ -0.01
SHH-201ENST00000297261 EMCNQ9ULC0 261 aa15□□□□□ -0.01
SHH-201ENST00000297261 ZNF487B1APH4 448 aa15□□□□□ -0.01
SHH-201ENST00000297261 CAPN15O75808 1086 aa15□□□□□ -0.01
SHH-201ENST00000297261 GALTP07902 379 aa15□□□□□ -0.01
SHH-201ENST00000297261 CCNYL3P0C7X3 344 aa15□□□□□ -0.01
SHH-201ENST00000297261 C1QTNF8P60827 252 aa15□□□□□ -0.01
SHH-201ENST00000297261 NDUFAF6Q330K2 333 aa15□□□□□ -0.01
SHH-201ENST00000297261 CYS1Q717R9 158 aa15□□□□□ -0.01
SHH-201ENST00000297261 ZSCAN2Q7Z7L9 614 aaPredicted RBP15□□□□□ -0.01
SHH-201ENST00000297261 GLB1L3Q8NCI6 653 aaPredicted RBP15□□□□□ -0.01
SHH-201ENST00000297261 SHKBP1Q8TBC3 707 aa15□□□□□ -0.01
SHH-201ENST00000297261 BRSK1Q8TDC3 778 aa15□□□□□ -0.01
SHH-201ENST00000297261 SLC30A2Q9BRI3 323 aa15□□□□□ -0.01
SHH-201ENST00000297261 C2orf49Q9BVC5 232 aaPredicted RBP15□□□□□ -0.01
SHH-201ENST00000297261 KIFC1Q9BW19 673 aa15□□□□□ -0.01
SHH-201ENST00000297261 TTYH1Q9H313 450 aaPredicted RBP15□□□□□ -0.01
SHH-201ENST00000297261 MKLN1Q9UL63 735 aa15□□□□□ -0.01
SHH-201ENST00000297261 CDK14O94921 469 aa15□□□□□ -0.01
SHH-201ENST00000297261 PRG2P13727 222 aa15□□□□□ -0.01
SHH-201ENST00000297261 DNAJA1P31689 397 aaKnown RBP15□□□□□ -0.01
SHH-201ENST00000297261 RPIAP49247 311 aa15□□□□□ -0.01
SHH-201ENST00000297261 RORCP51449 518 aa15□□□□□ -0.01
SHH-201ENST00000297261 MLLT6P55198 1093 aaPredicted RBP15□□□□□ -0.01
SHH-201ENST00000297261 TSTQ16762 297 aaKnown RBP15□□□□□ -0.01
SHH-201ENST00000297261 FBXL22Q6P050 247 aa15□□□□□ -0.01
SHH-201ENST00000297261 BARD1Q99728 777 aaKnown RBP15□□□□□ -0.01
SHH-201ENST00000297261 TRIT1Q9H3H1 467 aaKnown RBP15□□□□□ -0.01
SHH-201ENST00000297261 OSGEPL1Q9H4B0 414 aa15□□□□□ -0.01
SHH-201ENST00000297261 NUDT4Q9NZJ9 180 aa15□□□□□ -0.01
SHH-201ENST00000297261 OAS3Q9Y6K5 1087 aaKnown RBP15□□□□□ -0.01
SHH-201ENST00000297261 ZFP37Q9Y6Q3 630 aaPredicted RBP15□□□□□ -0.01
SHH-201ENST00000297261 COL11A1P12107 1806 aaPredicted RBP15□□□□□ -0.01
SHH-201ENST00000297261 CLDN11O75508 207 aa15□□□□□ -0.01
SHH-201ENST00000297261 BUD31P41223 144 aaPredicted RBP15□□□□□ -0.01
SHH-201ENST00000297261 YBEYP58557 167 aaPredicted RBP15□□□□□ -0.01
SHH-201ENST00000297261 WSCD2Q2TBF2 565 aa15□□□□□ -0.01
SHH-201ENST00000297261 UBE2UQ5VVX9 321 aa15□□□□□ -0.01
SHH-201ENST00000297261 ACAT2Q9BWD1 397 aa15□□□□□ -0.01
SHH-201ENST00000297261 NMUR1Q9HB89 426 aa15□□□□□ -0.01
SHH-201ENST00000297261 TRAV19A0A0A6YYK7 116 aa14.99□□□□□ -0.01
SHH-201ENST00000297261 CST5P28325 142 aaPredicted RBP14.99□□□□□ -0.01
SHH-201ENST00000297261 STAT5AP42229 794 aa14.99□□□□□ -0.01
SHH-201ENST00000297261 MAPK12P53778 367 aa14.99□□□□□ -0.01
SHH-201ENST00000297261 CXorf57Q6NSI4 855 aaKnown RBP14.99□□□□□ -0.01
SHH-201ENST00000297261 YAF2Q8IY57 180 aa14.99□□□□□ -0.01
SHH-201ENST00000297261 MEIOBQ8N635 442 aa14.99□□□□□ -0.01
SHH-201ENST00000297261 ZMIZ2Q8NF64 920 aa14.99□□□□□ -0.01
SHH-201ENST00000297261 OR10G2Q8NGC3 310 aa14.99□□□□□ -0.01
SHH-201ENST00000297261 C2orf15Q8WU43 125 aaKnown RBP14.99□□□□□ -0.01
SHH-201ENST00000297261 PPCDCQ96CD2 204 aa14.99□□□□□ -0.01
SHH-201ENST00000297261 ZNF641Q96N77 438 aaPredicted RBP14.99□□□□□ -0.01
SHH-201ENST00000297261 RAI2Q9Y5P3 530 aa14.99□□□□□ -0.01
SHH-201ENST00000297261 CROCCQ5TZA2 2017 aa14.99□□□□□ -0.01
SHH-201ENST00000297261 PRSS51A0A1B0GVH4 220 aa14.99□□□□□ -0.01
SHH-201ENST00000297261 FAM92AA1XBS5 289 aa14.99□□□□□ -0.01
SHH-201ENST00000297261 ERN1O75460 977 aaKnown RBP14.99□□□□□ -0.01
SHH-201ENST00000297261 KCNQ1P51787 676 aa14.99□□□□□ -0.01
SHH-201ENST00000297261 CES5AQ6NT32 575 aa14.99□□□□□ -0.01
SHH-201ENST00000297261 GKN1Q9NS71 199 aa14.99□□□□□ -0.01
SHH-201ENST00000297261 PCDHGB3Q9Y5G1 929 aa14.99□□□□□ -0.01
SHH-201ENST00000297261 KCNE2Q9Y6J6 123 aa14.99□□□□□ -0.01
SHH-201ENST00000297261 IFNW1P05000 195 aa14.99□□□□□ -0.01
SHH-201ENST00000297261 S100A9P06702 114 aaKnown RBP14.99□□□□□ -0.01
SHH-201ENST00000297261 SERPINA4P29622 427 aa14.99□□□□□ -0.01
SHH-201ENST00000297261 RCVRNP35243 200 aa14.99□□□□□ -0.01
SHH-201ENST00000297261 FBXW4P57775 412 aa14.99□□□□□ -0.01
SHH-201ENST00000297261 E2F2Q14209 437 aa14.99□□□□□ -0.01
SHH-201ENST00000297261 LINGO4Q6UY18 593 aa14.99□□□□□ -0.01
SHH-201ENST00000297261 PEX5LQ8IYB4 626 aa14.99□□□□□ -0.01
SHH-201ENST00000297261 HJURPQ8NCD3 748 aaPredicted RBP14.99□□□□□ -0.01
SHH-201ENST00000297261 TEX47Q8TBZ9 253 aa14.99□□□□□ -0.01
SHH-201ENST00000297261 REPS1Q96D71 796 aa14.99□□□□□ -0.01
SHH-201ENST00000297261 TEFMQ96QE5 360 aaKnown RBP14.99□□□□□ -0.01
SHH-201ENST00000297261 CARNS1A5YM72 827 aa14.98□□□□□ -0.01
SHH-201ENST00000297261 ANKRD33BA6NCL7 494 aa14.98□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms