RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 ENPP7Q6UWV6 458 aa18.7■□□□□ 0.58
UPF1-201ENST00000262803 TMEM17Q86X19 198 aa18.7■□□□□ 0.58
UPF1-201ENST00000262803 ZDHHC21Q8IVQ6 265 aa18.7■□□□□ 0.58
UPF1-201ENST00000262803 OR13C4Q8NGS5 318 aa18.7■□□□□ 0.58
UPF1-201ENST00000262803 RBPJLQ9UBG7 517 aa18.7■□□□□ 0.58
UPF1-201ENST00000262803 DNAJB4Q9UDY4 337 aa18.7■□□□□ 0.58
UPF1-201ENST00000262803 KLHL33A6NCF5 533 aa18.7■□□□□ 0.58
UPF1-201ENST00000262803 UPK3BL1B0FP48 263 aa18.7■□□□□ 0.58
UPF1-201ENST00000262803 UPK3BL2E5RIL1 263 aa18.7■□□□□ 0.58
UPF1-201ENST00000262803 ITGA10O75578 1167 aa18.7■□□□□ 0.58
UPF1-201ENST00000262803 PLGP00747 810 aaPredicted RBP18.7■□□□□ 0.58
UPF1-201ENST00000262803 CXCR1P25024 350 aa18.7■□□□□ 0.58
UPF1-201ENST00000262803 KLF1Q13351 362 aaPredicted RBP18.7■□□□□ 0.58
UPF1-201ENST00000262803 P4HA3Q7Z4N8 544 aa18.7■□□□□ 0.58
UPF1-201ENST00000262803 AKAP14Q86UN6 197 aa18.7■□□□□ 0.58
UPF1-201ENST00000262803 C12orf40Q86WS4 652 aa18.7■□□□□ 0.58
UPF1-201ENST00000262803 STX12Q86Y82 276 aa18.7■□□□□ 0.58
UPF1-201ENST00000262803 PLCZ1Q86YW0 608 aa18.7■□□□□ 0.58
UPF1-201ENST00000262803 OR2L5Q8NG80 312 aa18.7■□□□□ 0.58
UPF1-201ENST00000262803 SMOC2Q9H3U7 446 aa18.7■□□□□ 0.58
UPF1-201ENST00000262803 MINDY3Q9H8M7 445 aa18.7■□□□□ 0.58
UPF1-201ENST00000262803 PFDN2Q9UHV9 154 aa18.7■□□□□ 0.58
UPF1-201ENST00000262803 CYP17A1P05093 508 aa18.7■□□□□ 0.58
UPF1-201ENST00000262803 HLA-DQB2P05538 268 aa18.7■□□□□ 0.58
UPF1-201ENST00000262803 ZNF20P17024 532 aa18.7■□□□□ 0.58
UPF1-201ENST00000262803 GDI1P31150 447 aa18.7■□□□□ 0.58
UPF1-201ENST00000262803 GBX2P52951 348 aaPredicted RBP18.7■□□□□ 0.58
UPF1-201ENST00000262803 CBFBQ13951 182 aa18.7■□□□□ 0.58
UPF1-201ENST00000262803 TLR1Q15399 786 aa18.7■□□□□ 0.58
UPF1-201ENST00000262803 BPIFB1Q8TDL5 484 aa18.7■□□□□ 0.58
UPF1-201ENST00000262803 CNDP2Q96KP4 475 aaKnown RBP18.7■□□□□ 0.58
UPF1-201ENST00000262803 FAM83CQ9BQN1 747 aa18.7■□□□□ 0.58
UPF1-201ENST00000262803 PTTG2Q9NZH5 202 aa18.7■□□□□ 0.58
UPF1-201ENST00000262803 ZIM2Q9NZV7 527 aa18.7■□□□□ 0.58
UPF1-201ENST00000262803 AQP12BA6NM10 295 aa18.7■□□□□ 0.58
UPF1-201ENST00000262803 MSS51Q4VC12 460 aa18.7■□□□□ 0.58
UPF1-201ENST00000262803 ALKBH2Q6NS38 261 aa18.7■□□□□ 0.58
UPF1-201ENST00000262803 KCTD8Q6ZWB6 473 aa18.7■□□□□ 0.58
UPF1-201ENST00000262803 AQP12AQ8IXF9 295 aa18.7■□□□□ 0.58
UPF1-201ENST00000262803 OR56A1Q8NGH5 318 aa18.7■□□□□ 0.58
UPF1-201ENST00000262803 SLC32A1Q9H598 525 aa18.7■□□□□ 0.58
UPF1-201ENST00000262803 PCDHGA2Q9Y5H1 932 aa18.7■□□□□ 0.58
UPF1-201ENST00000262803 TEX264Q9Y6I9 313 aa18.7■□□□□ 0.58
UPF1-201ENST00000262803 C9IYK1 514 aa18.7■□□□□ 0.58
UPF1-201ENST00000262803 FFAR2O15552 330 aa18.7■□□□□ 0.58
UPF1-201ENST00000262803 PSIP1O75475 530 aaKnown RBP18.7■□□□□ 0.58
UPF1-201ENST00000262803 HRH2P25021 359 aa18.7■□□□□ 0.58
UPF1-201ENST00000262803 GJA9P57773 515 aa18.7■□□□□ 0.58
UPF1-201ENST00000262803 OR52B2Q96RD2 323 aa18.7■□□□□ 0.58
UPF1-201ENST00000262803 MRM3Q9HC36 420 aaKnown RBP18.7■□□□□ 0.58
UPF1-201ENST00000262803 GDAP2Q9NXN4 497 aa18.7■□□□□ 0.58
UPF1-201ENST00000262803 H6PDO95479 791 aa18.69■□□□□ 0.58
UPF1-201ENST00000262803 YAP1P46937 504 aaKnown RBP18.69■□□□□ 0.58
UPF1-201ENST00000262803 MOAP1Q96BY2 351 aa18.69■□□□□ 0.58
UPF1-201ENST00000262803 VPS29Q9UBQ0 182 aa18.69■□□□□ 0.58
UPF1-201ENST00000262803 TESMINQ9Y4I5 508 aa18.69■□□□□ 0.58
UPF1-201ENST00000262803 C11orf97A0A1B0GVM6 126 aaPredicted RBP18.69■□□□□ 0.58
UPF1-201ENST00000262803 CHRNA1P02708 482 aa18.69■□□□□ 0.58
UPF1-201ENST00000262803 TIE1P35590 1138 aa18.69■□□□□ 0.58
UPF1-201ENST00000262803 SGCBQ16585 318 aa18.69■□□□□ 0.58
UPF1-201ENST00000262803 BHLHE41Q9C0J9 482 aaPredicted RBP18.69■□□□□ 0.58
UPF1-201ENST00000262803 ZNF395Q9H8N7 513 aaPredicted RBP18.69■□□□□ 0.58
UPF1-201ENST00000262803 EBF2Q9HAK2 575 aa18.69■□□□□ 0.58
UPF1-201ENST00000262803 LYARQ9NX58 379 aaKnown RBP18.69■□□□□ 0.58
UPF1-201ENST00000262803 ENPP3O14638 875 aa18.69■□□□□ 0.58
UPF1-201ENST00000262803 OAS1P00973 400 aaKnown RBP18.69■□□□□ 0.58
UPF1-201ENST00000262803 ZNF3P17036 446 aa18.69■□□□□ 0.58
UPF1-201ENST00000262803 DHPSP49366 369 aaPredicted RBP18.69■□□□□ 0.58
UPF1-201ENST00000262803 ARHGAP1Q07960 439 aa18.69■□□□□ 0.58
UPF1-201ENST00000262803 CXorf57Q6NSI4 855 aaKnown RBP18.69■□□□□ 0.58
UPF1-201ENST00000262803 PAQR3Q6TCH7 311 aa18.69■□□□□ 0.58
UPF1-201ENST00000262803 CAND1Q86VP6 1230 aaKnown RBP18.69■□□□□ 0.58
UPF1-201ENST00000262803 ATP6V1C2Q8NEY4 427 aa18.69■□□□□ 0.58
UPF1-201ENST00000262803 KLHL6Q8WZ60 621 aa18.69■□□□□ 0.58
UPF1-201ENST00000262803 SHISA4Q96DD7 197 aa18.69■□□□□ 0.58
UPF1-201ENST00000262803 DIRAS2Q96HU8 199 aa18.69■□□□□ 0.58
UPF1-201ENST00000262803 FEM1AQ9BSK4 669 aa18.69■□□□□ 0.58
UPF1-201ENST00000262803 TLR9Q9NR96 1032 aa18.69■□□□□ 0.58
UPF1-201ENST00000262803 SPEF2Q9C093 1822 aa18.69■□□□□ 0.58
UPF1-201ENST00000262803 E7ENX8 843 aa18.69■□□□□ 0.58
UPF1-201ENST00000262803 KLF11O14901 512 aa18.69■□□□□ 0.58
UPF1-201ENST00000262803 SOX30O94993 753 aa18.69■□□□□ 0.58
UPF1-201ENST00000262803 RCBTB2O95199 551 aa18.69■□□□□ 0.58
UPF1-201ENST00000262803 LRRC3Q9BY71 257 aa18.69■□□□□ 0.58
UPF1-201ENST00000262803 RNF121Q9H920 327 aa18.69■□□□□ 0.58
UPF1-201ENST00000262803 RPL17P18621 184 aaKnown RBP18.68■□□□□ 0.58
UPF1-201ENST00000262803 EFNA1P20827 205 aaPredicted RBP18.68■□□□□ 0.58
UPF1-201ENST00000262803 E2F2Q14209 437 aa18.68■□□□□ 0.58
UPF1-201ENST00000262803 SLC8B1Q6J4K2 584 aa18.68■□□□□ 0.58
UPF1-201ENST00000262803 PLA2G15Q8NCC3 412 aa18.68■□□□□ 0.58
UPF1-201ENST00000262803 RPL10LQ96L21 214 aaKnown RBP18.68■□□□□ 0.58
UPF1-201ENST00000262803 BCO2Q9BYV7 579 aa18.68■□□□□ 0.58
UPF1-201ENST00000262803 ACTL8Q9H568 366 aa18.68■□□□□ 0.58
UPF1-201ENST00000262803 LTBP3Q9NS15 1303 aa18.68■□□□□ 0.58
UPF1-201ENST00000262803 CFIP05156 583 aa18.68■□□□□ 0.58
UPF1-201ENST00000262803 TLE2Q04725 743 aa18.68■□□□□ 0.58
UPF1-201ENST00000262803 CRHR2Q13324 411 aa18.68■□□□□ 0.58
UPF1-201ENST00000262803 SCARB2Q14108 478 aa18.68■□□□□ 0.58
UPF1-201ENST00000262803 RASGRP3Q8IV61 690 aa18.68■□□□□ 0.58
UPF1-201ENST00000262803 Q9N2J8 555 aa18.68■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms