RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 DCTPP1Q9H773 170 aa4.31□□□□□ -1.72
LINC00540-201ENST00000611481 FZD3Q9NPG1 666 aa4.31□□□□□ -1.72
LINC00540-201ENST00000611481 ABCF3Q9NUQ8 709 aa4.31□□□□□ -1.72
LINC00540-201ENST00000611481 DDX43Q9NXZ2 648 aaKnown RBP4.31□□□□□ -1.72
LINC00540-201ENST00000611481 EHD2Q9NZN4 543 aa4.31□□□□□ -1.72
LINC00540-201ENST00000611481 DDX25Q9UHL0 483 aaKnown RBP4.31□□□□□ -1.72
LINC00540-201ENST00000611481 CYTH4Q9UIA0 394 aa4.31□□□□□ -1.72
LINC00540-201ENST00000611481 LSM7Q9UK45 103 aaKnown RBP4.31□□□□□ -1.72
LINC00540-201ENST00000611481 CLEC4EQ9ULY5 219 aa4.31□□□□□ -1.72
LINC00540-201ENST00000611481 PLA2G4CQ9UP65 541 aa4.31□□□□□ -1.72
LINC00540-201ENST00000611481 AGAP1Q9UPQ3 857 aa4.31□□□□□ -1.72
LINC00540-201ENST00000611481 CSNK1G3Q9Y6M4 447 aa4.31□□□□□ -1.72
LINC00540-201ENST00000611481 RNF215Q9Y6U7 377 aa4.31□□□□□ -1.72
LINC00540-201ENST00000611481 SCN1AP35498 2009 aa4.31□□□□□ -1.72
LINC00540-201ENST00000611481 TCHHQ07283 1943 aa4.31□□□□□ -1.72
LINC00540-201ENST00000611481 RYR3Q15413 4870 aa4.3□□□□□ -1.72
LINC00540-201ENST00000611481 CYP3A7-CYP3A51PA0A087WV96 503 aa4.3□□□□□ -1.72
LINC00540-201ENST00000611481 A0A1B0GUH1 482 aa4.3□□□□□ -1.72
LINC00540-201ENST00000611481 TTC26A0AVF1 554 aa4.3□□□□□ -1.72
LINC00540-201ENST00000611481 PRSS29PA6NIE9 313 aa4.3□□□□□ -1.72
LINC00540-201ENST00000611481 LACTBL1A8MY62 500 aa4.3□□□□□ -1.72
LINC00540-201ENST00000611481 INPP4BO15327 924 aa4.3□□□□□ -1.72
LINC00540-201ENST00000611481 SLC31A1O15431 190 aa4.3□□□□□ -1.72
LINC00540-201ENST00000611481 HCRTO43612 131 aa4.3□□□□□ -1.72
LINC00540-201ENST00000611481 DPM1O60762 260 aa4.3□□□□□ -1.72
LINC00540-201ENST00000611481 NDST3O95803 873 aa4.3□□□□□ -1.72
LINC00540-201ENST00000611481 LY6G6DO95868 133 aa4.3□□□□□ -1.72
LINC00540-201ENST00000611481 SCGB1D1O95968 90 aa4.3□□□□□ -1.72
LINC00540-201ENST00000611481 PENKP01210 267 aaPredicted RBP4.3□□□□□ -1.72
LINC00540-201ENST00000611481 TK1P04183 234 aa4.3□□□□□ -1.72
LINC00540-201ENST00000611481 CHRM5P08912 532 aaPredicted RBP4.3□□□□□ -1.72
LINC00540-201ENST00000611481 FGF3P11487 239 aaPredicted RBP4.3□□□□□ -1.72
LINC00540-201ENST00000611481 GOT1P17174 413 aa4.3□□□□□ -1.72
LINC00540-201ENST00000611481 CYP3A7P24462 503 aa4.3□□□□□ -1.72
LINC00540-201ENST00000611481 GABRB3P28472 473 aa4.3□□□□□ -1.72
LINC00540-201ENST00000611481 NUDT1P36639 197 aa4.3□□□□□ -1.72
LINC00540-201ENST00000611481 PSMD8P48556 350 aa4.3□□□□□ -1.72
LINC00540-201ENST00000611481 CHAF1BQ13112 559 aa4.3□□□□□ -1.72
LINC00540-201ENST00000611481 C1orf61Q13536 156 aa4.3□□□□□ -1.72
LINC00540-201ENST00000611481 CUL4BQ13620 913 aa4.3□□□□□ -1.72
LINC00540-201ENST00000611481 BECN1Q14457 450 aa4.3□□□□□ -1.72
LINC00540-201ENST00000611481 CEBPEQ15744 281 aa4.3□□□□□ -1.72
LINC00540-201ENST00000611481 PFKFB3Q16875 520 aaPredicted RBP4.3□□□□□ -1.72
LINC00540-201ENST00000611481 FCRL6Q6DN72 434 aa4.3□□□□□ -1.72
LINC00540-201ENST00000611481 OR6B2Q6IFH4 312 aa4.3□□□□□ -1.72
LINC00540-201ENST00000611481 RPUSD3Q6P087 351 aaKnown RBP4.3□□□□□ -1.72
LINC00540-201ENST00000611481 PLBD1Q6P4A8 553 aa4.3□□□□□ -1.72
LINC00540-201ENST00000611481 ZNF783Q6ZMS7 281 aa4.3□□□□□ -1.72
LINC00540-201ENST00000611481 SLC22A18ASQ8N1D0 253 aa4.3□□□□□ -1.72
LINC00540-201ENST00000611481 AADATQ8N5Z0 425 aa4.3□□□□□ -1.72
LINC00540-201ENST00000611481 ST6GALNAC3Q8NDV1 305 aa4.3□□□□□ -1.72
LINC00540-201ENST00000611481 OR6Y1Q8NGX8 325 aa4.3□□□□□ -1.72
LINC00540-201ENST00000611481 CREB3L4Q8TEY5 395 aa4.3□□□□□ -1.72
LINC00540-201ENST00000611481 CCDC12Q8WUD4 166 aaPredicted RBP4.3□□□□□ -1.72
LINC00540-201ENST00000611481 TMEM158Q8WZ71 300 aa4.3□□□□□ -1.72
LINC00540-201ENST00000611481 KLK6Q92876 244 aa4.3□□□□□ -1.72
LINC00540-201ENST00000611481 ART4Q93070 314 aa4.3□□□□□ -1.72
LINC00540-201ENST00000611481 FBXO32Q969P5 355 aa4.3□□□□□ -1.72
LINC00540-201ENST00000611481 LRRC46Q96FV0 321 aa4.3□□□□□ -1.72
LINC00540-201ENST00000611481 FEM1CQ96JP0 617 aa4.3□□□□□ -1.72
LINC00540-201ENST00000611481 IFT74Q96LB3 600 aa4.3□□□□□ -1.72
LINC00540-201ENST00000611481 PRPF18Q99633 342 aaKnown RBP4.3□□□□□ -1.72
LINC00540-201ENST00000611481 PKMYT1Q99640 499 aa4.3□□□□□ -1.72
LINC00540-201ENST00000611481 ACBD6Q9BR61 282 aa4.3□□□□□ -1.72
LINC00540-201ENST00000611481 ZNF518BQ9C0D4 1074 aa4.3□□□□□ -1.72
LINC00540-201ENST00000611481 SUN2Q9UH99 717 aa4.3□□□□□ -1.72
LINC00540-201ENST00000611481 CHORDC1Q9UHD1 332 aaPredicted RBP4.3□□□□□ -1.72
LINC00540-201ENST00000611481 PILRAQ9UKJ1 303 aa4.3□□□□□ -1.72
LINC00540-201ENST00000611481 DDX19BQ9UMR2 479 aa4.3□□□□□ -1.72
LINC00540-201ENST00000611481 CYP46A1Q9Y6A2 500 aa4.3□□□□□ -1.72
LINC00540-201ENST00000611481 AKAP6Q13023 2319 aa4.3□□□□□ -1.72
LINC00540-201ENST00000611481 ZGRF1Q86YA3 2104 aa4.3□□□□□ -1.72
LINC00540-201ENST00000611481 HIVEP2P31629 2446 aa4.3□□□□□ -1.72
LINC00540-201ENST00000611481 A0A0G2JK05 382 aa4.29□□□□□ -1.72
LINC00540-201ENST00000611481 CCDC169A6NNP5 214 aa4.29□□□□□ -1.72
LINC00540-201ENST00000611481 INAFM1C9JVW0 142 aa4.29□□□□□ -1.72
LINC00540-201ENST00000611481 F8VP50 259 aa4.29□□□□□ -1.72
LINC00540-201ENST00000611481 BTN3A1O00481 513 aa4.29□□□□□ -1.72
LINC00540-201ENST00000611481 FCHO1O14526 889 aa4.29□□□□□ -1.72
LINC00540-201ENST00000611481 SPRY1O43609 319 aaPredicted RBP4.29□□□□□ -1.72
LINC00540-201ENST00000611481 ASNA1O43681 348 aa4.29□□□□□ -1.72
LINC00540-201ENST00000611481 GCATO75600 419 aa4.29□□□□□ -1.72
LINC00540-201ENST00000611481 ACTL6BO94805 426 aa4.29□□□□□ -1.72
LINC00540-201ENST00000611481 LYPLA2O95372 231 aa4.29□□□□□ -1.72
LINC00540-201ENST00000611481 HSPA4LO95757 839 aa4.29□□□□□ -1.72
LINC00540-201ENST00000611481 CSF2P04141 144 aa4.29□□□□□ -1.72
LINC00540-201ENST00000611481 FESP07332 822 aa4.29□□□□□ -1.72
LINC00540-201ENST00000611481 ADRB2P07550 413 aa4.29□□□□□ -1.72
LINC00540-201ENST00000611481 ANXA6P08133 673 aa4.29□□□□□ -1.72
LINC00540-201ENST00000611481 CLTAP09496 248 aa4.29□□□□□ -1.72
LINC00540-201ENST00000611481 CYP2A6P11509 494 aaPredicted RBP4.29□□□□□ -1.72
LINC00540-201ENST00000611481 ATP6V1B1P15313 513 aa4.29□□□□□ -1.72
LINC00540-201ENST00000611481 PORP16435 677 aaPredicted RBP4.29□□□□□ -1.72
LINC00540-201ENST00000611481 IL11P20809 199 aa4.29□□□□□ -1.72
LINC00540-201ENST00000611481 F8A1P23610 371 aa4.29□□□□□ -1.72
LINC00540-201ENST00000611481 NFKBIAP25963 317 aa4.29□□□□□ -1.72
LINC00540-201ENST00000611481 YWHAQP27348 245 aa4.29□□□□□ -1.72
LINC00540-201ENST00000611481 MATR3P43243 847 aaKnown RBP eCLIP4.29□□□□□ -1.72
LINC00540-201ENST00000611481 PIK3CGP48736 1102 aa4.29□□□□□ -1.72
LINC00540-201ENST00000611481 CARSP49589 748 aaKnown RBP4.29□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms