RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 LRRC8BQ6P9F7 803 aa9.41□□□□□ -0.9
VRK3-216ENST00000599342 CNSTQ6PJW8 725 aa9.41□□□□□ -0.9
VRK3-216ENST00000599342 FIGLAQ6QHK4 219 aa9.41□□□□□ -0.9
VRK3-216ENST00000599342 GALNT16Q8N428 558 aa9.41□□□□□ -0.9
VRK3-216ENST00000599342 RBMXL3Q8N7X1 1067 aaKnown RBP9.41□□□□□ -0.9
VRK3-216ENST00000599342 LMNTD1Q8N9Z9 388 aa9.41□□□□□ -0.9
VRK3-216ENST00000599342 TRIM58Q8NG06 486 aa9.41□□□□□ -0.9
VRK3-216ENST00000599342 TM9SF4Q92544 642 aa9.41□□□□□ -0.9
VRK3-216ENST00000599342 FKBP10Q96AY3 582 aa9.41□□□□□ -0.9
VRK3-216ENST00000599342 SELENOSQ9BQE4 189 aa9.41□□□□□ -0.9
VRK3-216ENST00000599342 P2RY12Q9H244 342 aa9.41□□□□□ -0.9
VRK3-216ENST00000599342 MRM3Q9HC36 420 aaKnown RBP9.41□□□□□ -0.9
VRK3-216ENST00000599342 LRRC4CQ9HCJ2 640 aa9.41□□□□□ -0.9
VRK3-216ENST00000599342 HOMER3Q9NSC5 361 aa9.41□□□□□ -0.9
VRK3-216ENST00000599342 SYBUQ9NX95 663 aa9.41□□□□□ -0.9
VRK3-216ENST00000599342 P4HTMQ9NXG6 502 aa9.41□□□□□ -0.9
VRK3-216ENST00000599342 BLACEA4D250 179 aa9.4□□□□□ -0.9
VRK3-216ENST00000599342 TARM1B6A8C7 271 aa9.4□□□□□ -0.9
VRK3-216ENST00000599342 E5RI56 91 aa9.4□□□□□ -0.9
VRK3-216ENST00000599342 H3BMM5 538 aa9.4□□□□□ -0.9
VRK3-216ENST00000599342 AGPSO00116 658 aa9.4□□□□□ -0.9
VRK3-216ENST00000599342 DSCR3O14972 297 aa9.4□□□□□ -0.9
VRK3-216ENST00000599342 NRDCO43847 1150 aa9.4□□□□□ -0.9
VRK3-216ENST00000599342 CEP104O60308 925 aa9.4□□□□□ -0.9
VRK3-216ENST00000599342 VAPBO95292 243 aa9.4□□□□□ -0.9
VRK3-216ENST00000599342 C1orf105O95561 183 aa9.4□□□□□ -0.9
VRK3-216ENST00000599342 ESR1P03372 595 aa9.4□□□□□ -0.9
VRK3-216ENST00000599342 TPSB2P20231 275 aa9.4□□□□□ -0.9
VRK3-216ENST00000599342 FMO4P31512 558 aa9.4□□□□□ -0.9
VRK3-216ENST00000599342 GRIA3P42263 894 aa9.4□□□□□ -0.9
VRK3-216ENST00000599342 KCNJ1P48048 391 aa9.4□□□□□ -0.9
VRK3-216ENST00000599342 TERF1P54274 439 aa9.4□□□□□ -0.9
VRK3-216ENST00000599342 AIMP2Q13155 320 aaKnown RBP9.4□□□□□ -0.9
VRK3-216ENST00000599342 GRB7Q14451 532 aa9.4□□□□□ -0.9
VRK3-216ENST00000599342 NAA25Q14CX7 972 aa9.4□□□□□ -0.9
VRK3-216ENST00000599342 TPSAB1Q15661 275 aa9.4□□□□□ -0.9
VRK3-216ENST00000599342 CTSL3PQ5NE16 218 aa9.4□□□□□ -0.9
VRK3-216ENST00000599342 IRAK1BP1Q5VVH5 260 aa9.4□□□□□ -0.9
VRK3-216ENST00000599342 FCRL6Q6DN72 434 aa9.4□□□□□ -0.9
VRK3-216ENST00000599342 CASC4Q6P4E1 433 aa9.4□□□□□ -0.9
VRK3-216ENST00000599342 CES3Q6UWW8 571 aa9.4□□□□□ -0.9
VRK3-216ENST00000599342 ZNF662Q6ZS27 426 aa9.4□□□□□ -0.9
VRK3-216ENST00000599342 IQCKQ8N0W5 287 aa9.4□□□□□ -0.9
VRK3-216ENST00000599342 ZUFSPQ96AP4 578 aa9.4□□□□□ -0.9
VRK3-216ENST00000599342 NACC2Q96BF6 587 aa9.4□□□□□ -0.9
VRK3-216ENST00000599342 MFSD3Q96ES6 412 aa9.4□□□□□ -0.9
VRK3-216ENST00000599342 VPS50Q96JG6 964 aa9.4□□□□□ -0.9
VRK3-216ENST00000599342 MIPEPQ99797 713 aa9.4□□□□□ -0.9
VRK3-216ENST00000599342 KIFC1Q9BW19 673 aa9.4□□□□□ -0.9
VRK3-216ENST00000599342 ILKAPQ9H0C8 392 aaPredicted RBP9.4□□□□□ -0.9
VRK3-216ENST00000599342 ATP13A2Q9NQ11 1180 aa9.4□□□□□ -0.9
VRK3-216ENST00000599342 CUTCQ9NTM9 273 aa9.4□□□□□ -0.9
VRK3-216ENST00000599342 SPATA7Q9P0W8 599 aa9.4□□□□□ -0.9
VRK3-216ENST00000599342 SAMD15Q9P1V8 674 aa9.4□□□□□ -0.9
VRK3-216ENST00000599342 TSR3Q9UJK0 312 aaKnown RBP9.4□□□□□ -0.9
VRK3-216ENST00000599342 CDC23Q9UJX2 597 aa9.4□□□□□ -0.9
VRK3-216ENST00000599342 NXT1Q9UKK6 140 aaKnown RBP9.4□□□□□ -0.9
VRK3-216ENST00000599342 SOX13Q9UN79 622 aa9.4□□□□□ -0.9
VRK3-216ENST00000599342 RUVBL2Q9Y230 463 aaKnown RBP9.4□□□□□ -0.9
VRK3-216ENST00000599342 B3GNT3Q9Y2A9 372 aa9.4□□□□□ -0.9
VRK3-216ENST00000599342 VPS9D1Q9Y2B5 631 aa9.4□□□□□ -0.9
VRK3-216ENST00000599342 NFS1Q9Y697 457 aa9.4□□□□□ -0.9
VRK3-216ENST00000599342 FLNBO75369 2602 aaKnown RBP9.4□□□□□ -0.9
VRK3-216ENST00000599342 SPENQ96T58 3664 aaKnown RBP9.4□□□□□ -0.9
VRK3-216ENST00000599342 RELNP78509 3460 aa9.39□□□□□ -0.91
VRK3-216ENST00000599342 GOLGA8KD6RF30 607 aa9.39□□□□□ -0.91
VRK3-216ENST00000599342 GOLGA8TH3BQL2 631 aa9.39□□□□□ -0.91
VRK3-216ENST00000599342 SRPX2O60687 465 aaPredicted RBP9.39□□□□□ -0.91
VRK3-216ENST00000599342 CNOT3O75175 753 aaKnown RBP9.39□□□□□ -0.91
VRK3-216ENST00000599342 NIPSNAP2O75323 286 aa9.39□□□□□ -0.91
VRK3-216ENST00000599342 ALBP02768 609 aa9.39□□□□□ -0.91
VRK3-216ENST00000599342 UMODP07911 640 aa9.39□□□□□ -0.91
VRK3-216ENST00000599342 ERVK-10P10266 1014 aa9.39□□□□□ -0.91
VRK3-216ENST00000599342 SPTBP11277 2137 aa9.39□□□□□ -0.91
VRK3-216ENST00000599342 CHRM3P20309 590 aa9.39□□□□□ -0.91
VRK3-216ENST00000599342 ITGAXP20702 1163 aa9.39□□□□□ -0.91
VRK3-216ENST00000599342 OGNP20774 298 aaKnown RBP9.39□□□□□ -0.91
VRK3-216ENST00000599342 MMP11P24347 488 aa9.39□□□□□ -0.91
VRK3-216ENST00000599342 MCM3P25205 808 aa9.39□□□□□ -0.91
VRK3-216ENST00000599342 ITGA3P26006 1051 aa9.39□□□□□ -0.91
VRK3-216ENST00000599342 ARNTP27540 789 aa9.39□□□□□ -0.91
VRK3-216ENST00000599342 PSMB5P28074 263 aa9.39□□□□□ -0.91
VRK3-216ENST00000599342 CMPK1P30085 196 aa9.39□□□□□ -0.91
VRK3-216ENST00000599342 CXCR5P32302 372 aa9.39□□□□□ -0.91
VRK3-216ENST00000599342 GCGRP47871 477 aa9.39□□□□□ -0.91
VRK3-216ENST00000599342 VPS41P49754 854 aa9.39□□□□□ -0.91
VRK3-216ENST00000599342 FOXL2P58012 376 aa9.39□□□□□ -0.91
VRK3-216ENST00000599342 VSX2P58304 361 aaPredicted RBP9.39□□□□□ -0.91
VRK3-216ENST00000599342 TRIP13Q15645 432 aaPredicted RBP9.39□□□□□ -0.91
VRK3-216ENST00000599342 TYSND1Q2T9J0 566 aa9.39□□□□□ -0.91
VRK3-216ENST00000599342 FAM214AQ32MH5 1076 aa9.39□□□□□ -0.91
VRK3-216ENST00000599342 PRR30Q53SZ7 412 aaPredicted RBP9.39□□□□□ -0.91
VRK3-216ENST00000599342 KIAA0930Q6ICG6 404 aaPredicted RBP9.39□□□□□ -0.91
VRK3-216ENST00000599342 OVCH1Q7RTY7 1134 aa9.39□□□□□ -0.91
VRK3-216ENST00000599342 PPP1R32Q7Z5V6 425 aa9.39□□□□□ -0.91
VRK3-216ENST00000599342 ZADH2Q8N4Q0 377 aa9.39□□□□□ -0.91
VRK3-216ENST00000599342 Q8NA96 180 aa9.39□□□□□ -0.91
VRK3-216ENST00000599342 OR2L3Q8NG85 312 aa9.39□□□□□ -0.91
VRK3-216ENST00000599342 HMGCLL1Q8TB92 370 aa9.39□□□□□ -0.91
VRK3-216ENST00000599342 FAM136AQ96C01 138 aa9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms