RNA–Protein interactions for RNA: ENST00000583344.1

SMCHD1-208, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 738 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-208ENST00000583344 HCFC1R1Q9NWW0 138 aa3.87□□□□□ -1.79
SMCHD1-208ENST00000583344 IL1RAPL1Q9NZN1 696 aa3.87□□□□□ -1.79
SMCHD1-208ENST00000583344 KIAA1456Q9P272 454 aa3.87□□□□□ -1.79
SMCHD1-208ENST00000583344 NFKBIL1Q9UBC1 381 aaPredicted RBP3.87□□□□□ -1.79
SMCHD1-208ENST00000583344 MAD2L2Q9UI95 211 aa3.87□□□□□ -1.79
SMCHD1-208ENST00000583344 VPS28Q9UK41 221 aa3.87□□□□□ -1.79
SMCHD1-208ENST00000583344 FBXL5Q9UKA1 691 aa3.87□□□□□ -1.79
SMCHD1-208ENST00000583344 TBX20Q9UMR3 447 aa3.87□□□□□ -1.79
SMCHD1-208ENST00000583344 OR2W1Q9Y3N9 320 aa3.87□□□□□ -1.79
SMCHD1-208ENST00000583344 BZW2Q9Y6E2 419 aaKnown RBP3.87□□□□□ -1.79
SMCHD1-208ENST00000583344 FAM205AQ6ZU69 1335 aa3.87□□□□□ -1.79
SMCHD1-208ENST00000583344 COL1A1P02452 1464 aaPredicted RBP3.86□□□□□ -1.79
SMCHD1-208ENST00000583344 CACNA1SQ13698 1873 aa3.86□□□□□ -1.79
SMCHD1-208ENST00000583344 MYH2Q9UKX2 1941 aa3.86□□□□□ -1.79
SMCHD1-208ENST00000583344 MACROD2A1Z1Q3 448 aa3.86□□□□□ -1.79
SMCHD1-208ENST00000583344 LRRC53A6NM62 1247 aa3.86□□□□□ -1.79
SMCHD1-208ENST00000583344 PP2D1A8MPX8 630 aa3.86□□□□□ -1.79
SMCHD1-208ENST00000583344 SNAP23O00161 211 aa3.86□□□□□ -1.79
SMCHD1-208ENST00000583344 EPHB6O15197 1021 aa3.86□□□□□ -1.79
SMCHD1-208ENST00000583344 PPIP5K2O43314 1243 aa3.86□□□□□ -1.79
SMCHD1-208ENST00000583344 TRAPPC3O43617 180 aa3.86□□□□□ -1.79
SMCHD1-208ENST00000583344 CYTH3O43739 400 aa3.86□□□□□ -1.79
SMCHD1-208ENST00000583344 KRT14P02533 472 aa3.86□□□□□ -1.79
SMCHD1-208ENST00000583344 NR1D1P20393 614 aa3.86□□□□□ -1.79
SMCHD1-208ENST00000583344 MAP2K2P36507 400 aa3.86□□□□□ -1.79
SMCHD1-208ENST00000583344 PRKCIP41743 596 aa3.86□□□□□ -1.79
SMCHD1-208ENST00000583344 HSD17B4P51659 736 aa3.86□□□□□ -1.79
SMCHD1-208ENST00000583344 MNAT1P51948 309 aa3.86□□□□□ -1.79
SMCHD1-208ENST00000583344 EIF3BP55884 814 aaKnown RBP3.86□□□□□ -1.79
SMCHD1-208ENST00000583344 TNNC1P63316 161 aa3.86□□□□□ -1.79
SMCHD1-208ENST00000583344 FKBP3Q00688 224 aaKnown RBP3.86□□□□□ -1.79
SMCHD1-208ENST00000583344 TFAP4Q01664 338 aa3.86□□□□□ -1.79
SMCHD1-208ENST00000583344 GUCY2DQ02846 1103 aa3.86□□□□□ -1.79
SMCHD1-208ENST00000583344 MECOMQ03112 1051 aa3.86□□□□□ -1.79
SMCHD1-208ENST00000583344 IFFO1Q0D2I5 559 aa3.86□□□□□ -1.79
SMCHD1-208ENST00000583344 TBL3Q12788 808 aaKnown RBP3.86□□□□□ -1.79
SMCHD1-208ENST00000583344 XRCC4Q13426 336 aa3.86□□□□□ -1.79
SMCHD1-208ENST00000583344 RIPK1Q13546 671 aa3.86□□□□□ -1.79
SMCHD1-208ENST00000583344 NONOQ15233 471 aaKnown RBP eCLIP3.86□□□□□ -1.79
SMCHD1-208ENST00000583344 TAF11Q15544 211 aa3.86□□□□□ -1.79
SMCHD1-208ENST00000583344 ZNF876PQ49A33 203 aa3.86□□□□□ -1.79
SMCHD1-208ENST00000583344 SFMBT2Q5VUG0 894 aa3.86□□□□□ -1.79
SMCHD1-208ENST00000583344 ATG16L1Q676U5 607 aa3.86□□□□□ -1.79
SMCHD1-208ENST00000583344 HIST2H2BDQ6DRA6 164 aa3.86□□□□□ -1.79
SMCHD1-208ENST00000583344 LCTLQ6UWM7 567 aa3.86□□□□□ -1.79
SMCHD1-208ENST00000583344 ZNF497Q6ZNH5 498 aa3.86□□□□□ -1.79
SMCHD1-208ENST00000583344 CROCCP2Q86T23 111 aa3.86□□□□□ -1.79
SMCHD1-208ENST00000583344 RNF113BQ8IZP6 322 aaKnown RBP3.86□□□□□ -1.79
SMCHD1-208ENST00000583344 PLD5Q8N7P1 536 aa3.86□□□□□ -1.79
SMCHD1-208ENST00000583344 CNBD1Q8NA66 436 aa3.86□□□□□ -1.79
SMCHD1-208ENST00000583344 KIAA0895Q8NCT3 520 aa3.86□□□□□ -1.79
SMCHD1-208ENST00000583344 KLHDC9Q8NEP7 349 aa3.86□□□□□ -1.79
SMCHD1-208ENST00000583344 BEST2Q8NFU1 509 aa3.86□□□□□ -1.79
SMCHD1-208ENST00000583344 OR10V1Q8NGI7 309 aa3.86□□□□□ -1.79
SMCHD1-208ENST00000583344 DNAJC19Q96DA6 116 aa3.86□□□□□ -1.79
SMCHD1-208ENST00000583344 CCDC43Q96MW1 224 aaKnown RBP3.86□□□□□ -1.79
SMCHD1-208ENST00000583344 GDAP1L1Q96MZ0 367 aa3.86□□□□□ -1.79
SMCHD1-208ENST00000583344 TSG101Q99816 390 aa3.86□□□□□ -1.79
SMCHD1-208ENST00000583344 TMEM109Q9BVC6 243 aa3.86□□□□□ -1.79
SMCHD1-208ENST00000583344 PHF7Q9BWX1 381 aaPredicted RBP3.86□□□□□ -1.79
SMCHD1-208ENST00000583344 TXLNGYQ9BZA5 131 aa3.86□□□□□ -1.79
SMCHD1-208ENST00000583344 TTYH1Q9H313 450 aaPredicted RBP3.86□□□□□ -1.79
SMCHD1-208ENST00000583344 PLEKHA4Q9H4M7 779 aa3.86□□□□□ -1.79
SMCHD1-208ENST00000583344 CNOT10Q9H9A5 744 aaKnown RBP3.86□□□□□ -1.79
SMCHD1-208ENST00000583344 MAGEE1Q9HCI5 957 aa3.86□□□□□ -1.79
SMCHD1-208ENST00000583344 TBC1D29Q9UFV1 150 aa3.86□□□□□ -1.79
SMCHD1-208ENST00000583344 FAM153AQ9UHL3 310 aa3.86□□□□□ -1.79
SMCHD1-208ENST00000583344 SLC12A6Q9UHW9 1150 aa3.86□□□□□ -1.79
SMCHD1-208ENST00000583344 CNOT7Q9UIV1 285 aaKnown RBP3.86□□□□□ -1.79
SMCHD1-208ENST00000583344 NENFQ9UMX5 172 aa3.86□□□□□ -1.79
SMCHD1-208ENST00000583344 ATP6V0A2Q9Y487 856 aa3.86□□□□□ -1.79
SMCHD1-208ENST00000583344 CAPN7Q9Y6W3 813 aa3.86□□□□□ -1.79
SMCHD1-208ENST00000583344 TOGARAM1Q9Y4F4 1720 aa3.86□□□□□ -1.79
SMCHD1-208ENST00000583344 ROBO3Q96MS0 1386 aa3.86□□□□□ -1.79
SMCHD1-208ENST00000583344 MYH13Q9UKX3 1938 aa3.85□□□□□ -1.79
SMCHD1-208ENST00000583344 SLIT2O94813 1529 aa3.85□□□□□ -1.79
SMCHD1-208ENST00000583344 A0A087X0T9 212 aa3.85□□□□□ -1.79
SMCHD1-208ENST00000583344 GOLGA6L7A0A1B0GV03 622 aa3.85□□□□□ -1.79
SMCHD1-208ENST00000583344 SMCO2A6NFE2 343 aa3.85□□□□□ -1.79
SMCHD1-208ENST00000583344 TMEM202A6NGA9 273 aa3.85□□□□□ -1.79
SMCHD1-208ENST00000583344 IFNL4K9M1U5 179 aa3.85□□□□□ -1.79
SMCHD1-208ENST00000583344 DNM1LO00429 736 aa3.85□□□□□ -1.79
SMCHD1-208ENST00000583344 PES1O00541 588 aaKnown RBP3.85□□□□□ -1.79
SMCHD1-208ENST00000583344 AP3D1O14617 1153 aa3.85□□□□□ -1.79
SMCHD1-208ENST00000583344 RAD51CO43502 376 aa3.85□□□□□ -1.79
SMCHD1-208ENST00000583344 EXTL3O43909 919 aa3.85□□□□□ -1.79
SMCHD1-208ENST00000583344 MGRN1O60291 552 aa3.85□□□□□ -1.79
SMCHD1-208ENST00000583344 DOK2O60496 412 aa3.85□□□□□ -1.79
SMCHD1-208ENST00000583344 NMT2O60551 498 aa3.85□□□□□ -1.79
SMCHD1-208ENST00000583344 PALMO75781 387 aa3.85□□□□□ -1.79
SMCHD1-208ENST00000583344 DNTTP04053 509 aa3.85□□□□□ -1.79
SMCHD1-208ENST00000583344 GSTA1P08263 222 aa3.85□□□□□ -1.79
SMCHD1-208ENST00000583344 FAM228BP0C875 321 aa3.85□□□□□ -1.79
SMCHD1-208ENST00000583344 PATE4P0C8F1 98 aa3.85□□□□□ -1.79
SMCHD1-208ENST00000583344 POU1F1P28069 291 aa3.85□□□□□ -1.79
SMCHD1-208ENST00000583344 HSD17B3P37058 310 aa3.85□□□□□ -1.79
SMCHD1-208ENST00000583344 GYG1P46976 350 aa3.85□□□□□ -1.79
SMCHD1-208ENST00000583344 MRPL12P52815 198 aaKnown RBP3.85□□□□□ -1.79
SMCHD1-208ENST00000583344 ASIC1P78348 528 aa3.85□□□□□ -1.79
SMCHD1-208ENST00000583344 GFPT1Q06210 699 aaPredicted RBP3.85□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms