RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 P4HTMQ9NXG6 502 aa6.46□□□□□ -1.38
VPS53-213ENST00000572334 EURLQ9NYK6 297 aa6.46□□□□□ -1.38
VPS53-213ENST00000572334 OR6C2Q9NZP2 312 aa6.46□□□□□ -1.38
VPS53-213ENST00000572334 MARCH4Q9P2E8 410 aaPredicted RBP6.46□□□□□ -1.38
VPS53-213ENST00000572334 CIDEBQ9UHD4 219 aa6.46□□□□□ -1.38
VPS53-213ENST00000572334 RIMKLBQ9ULI2 386 aa6.46□□□□□ -1.38
VPS53-213ENST00000572334 PYCARDQ9ULZ3 195 aa6.46□□□□□ -1.38
VPS53-213ENST00000572334 ASF1AQ9Y294 204 aa6.46□□□□□ -1.38
VPS53-213ENST00000572334 TDRKHQ9Y2W6 561 aaKnown RBP6.46□□□□□ -1.38
VPS53-213ENST00000572334 CAPN6Q9Y6Q1 641 aa6.46□□□□□ -1.38
VPS53-213ENST00000572334 AP1M2Q9Y6Q5 423 aa6.46□□□□□ -1.38
VPS53-213ENST00000572334 APCP25054 2843 aa6.45□□□□□ -1.38
VPS53-213ENST00000572334 CACNA1CQ13936 2221 aa6.45□□□□□ -1.38
VPS53-213ENST00000572334 NCOA6Q14686 2063 aaPredicted RBP6.45□□□□□ -1.38
VPS53-213ENST00000572334 A1L4Q6 167 aa6.45□□□□□ -1.38
VPS53-213ENST00000572334 ISM1B1AKI9 464 aa6.45□□□□□ -1.38
VPS53-213ENST00000572334 C9J4A7 227 aa6.45□□□□□ -1.38
VPS53-213ENST00000572334 NRP2O60462 931 aa6.45□□□□□ -1.38
VPS53-213ENST00000572334 ALOX12BO75342 701 aa6.45□□□□□ -1.38
VPS53-213ENST00000572334 SLCO2B1O94956 709 aa6.45□□□□□ -1.38
VPS53-213ENST00000572334 FTH1P02794 183 aa6.45□□□□□ -1.38
VPS53-213ENST00000572334 AGXTP21549 392 aa6.45□□□□□ -1.38
VPS53-213ENST00000572334 CD9P21926 228 aa6.45□□□□□ -1.38
VPS53-213ENST00000572334 AOAHP28039 575 aa6.45□□□□□ -1.38
VPS53-213ENST00000572334 FOLR3P41439 243 aa6.45□□□□□ -1.38
VPS53-213ENST00000572334 RAB28P51157 221 aa6.45□□□□□ -1.38
VPS53-213ENST00000572334 RRADP55042 308 aa6.45□□□□□ -1.38
VPS53-213ENST00000572334 CSE1LP55060 971 aaKnown RBP6.45□□□□□ -1.38
VPS53-213ENST00000572334 YBX1P67809 324 aaKnown RBP6.45□□□□□ -1.38
VPS53-213ENST00000572334 IRX1P78414 480 aaPredicted RBP6.45□□□□□ -1.38
VPS53-213ENST00000572334 Q0VFX4 171 aa6.45□□□□□ -1.38
VPS53-213ENST00000572334 KIR2DS3Q14952 304 aa6.45□□□□□ -1.38
VPS53-213ENST00000572334 NR6A1Q15406 480 aa6.45□□□□□ -1.38
VPS53-213ENST00000572334 SIX1Q15475 284 aaPredicted RBP6.45□□□□□ -1.38
VPS53-213ENST00000572334 NKG7Q16617 165 aa6.45□□□□□ -1.38
VPS53-213ENST00000572334 KCTD19Q17RG1 926 aaPredicted RBP6.45□□□□□ -1.38
VPS53-213ENST00000572334 P3H1Q32P28 736 aa6.45□□□□□ -1.38
VPS53-213ENST00000572334 CCSMST1Q4G0I0 132 aa6.45□□□□□ -1.38
VPS53-213ENST00000572334 NKAIN1Q4KMZ8 207 aa6.45□□□□□ -1.38
VPS53-213ENST00000572334 DNAJC21Q5F1R6 531 aaKnown RBP6.45□□□□□ -1.38
VPS53-213ENST00000572334 ZNF787Q6DD87 383 aa6.45□□□□□ -1.38
VPS53-213ENST00000572334 TLDC1Q6P9B6 456 aa6.45□□□□□ -1.38
VPS53-213ENST00000572334 KIRREL2Q6UWL6 708 aa6.45□□□□□ -1.38
VPS53-213ENST00000572334 IGFL2Q6UWQ7 119 aa6.45□□□□□ -1.38
VPS53-213ENST00000572334 LDB1Q86U70 411 aaPredicted RBP6.45□□□□□ -1.38
VPS53-213ENST00000572334 LRRC8AQ8IWT6 810 aa6.45□□□□□ -1.38
VPS53-213ENST00000572334 GPR135Q8IZ08 494 aa6.45□□□□□ -1.38
VPS53-213ENST00000572334 CISD2Q8N5K1 135 aaKnown RBP6.45□□□□□ -1.38
VPS53-213ENST00000572334 C2orf73Q8N5S3 287 aaPredicted RBP6.45□□□□□ -1.38
VPS53-213ENST00000572334 AMER2Q8N7J2 671 aa6.45□□□□□ -1.38
VPS53-213ENST00000572334 TTC13Q8NBP0 860 aa6.45□□□□□ -1.38
VPS53-213ENST00000572334 SPC24Q8NBT2 197 aa6.45□□□□□ -1.38
VPS53-213ENST00000572334 DENND1AQ8TEH3 1009 aa6.45□□□□□ -1.38
VPS53-213ENST00000572334 PTERQ96BW5 349 aa6.45□□□□□ -1.38
VPS53-213ENST00000572334 FERMT1Q9BQL6 677 aa6.45□□□□□ -1.38
VPS53-213ENST00000572334 CARD6Q9BX69 1037 aa6.45□□□□□ -1.38
VPS53-213ENST00000572334 SLC7A5P2Q9GIP4 190 aa6.45□□□□□ -1.38
VPS53-213ENST00000572334 SLC26A1Q9H2B4 701 aa6.45□□□□□ -1.38
VPS53-213ENST00000572334 KCNF1Q9H3M0 494 aa6.45□□□□□ -1.38
VPS53-213ENST00000572334 SLC6A20Q9NP91 592 aa6.45□□□□□ -1.38
VPS53-213ENST00000572334 SLAMF7Q9NQ25 335 aa6.45□□□□□ -1.38
VPS53-213ENST00000572334 CASS4Q9NQ75 786 aa6.45□□□□□ -1.38
VPS53-213ENST00000572334 IFT80Q9P2H3 777 aaPredicted RBP6.45□□□□□ -1.38
VPS53-213ENST00000572334 POLG2Q9UHN1 485 aa6.45□□□□□ -1.38
VPS53-213ENST00000572334 AMFRQ9UKV5 643 aa6.45□□□□□ -1.38
VPS53-213ENST00000572334 PLCL2Q9UPR0 1127 aa6.45□□□□□ -1.38
VPS53-213ENST00000572334 B3GNT3Q9Y2A9 372 aa6.45□□□□□ -1.38
VPS53-213ENST00000572334 PADI2Q9Y2J8 665 aa6.45□□□□□ -1.38
VPS53-213ENST00000572334 TCAF1Q9Y4C2 921 aa6.45□□□□□ -1.38
VPS53-213ENST00000572334 PCDHGA10Q9Y5H3 936 aa6.45□□□□□ -1.38
VPS53-213ENST00000572334 HS3ST3B1Q9Y662 390 aa6.45□□□□□ -1.38
VPS53-213ENST00000572334 AKAP9Q99996 3911 aa6.44□□□□□ -1.38
VPS53-213ENST00000572334 A0A1W2PPV9 198 aa6.44□□□□□ -1.38
VPS53-213ENST00000572334 HEATR9A2RTY3 570 aa6.44□□□□□ -1.38
VPS53-213ENST00000572334 FITM1A5D6W6 292 aa6.44□□□□□ -1.38
VPS53-213ENST00000572334 CCDC151A5D8V7 595 aa6.44□□□□□ -1.38
VPS53-213ENST00000572334 VSTM2BA6NLU5 285 aa6.44□□□□□ -1.38
VPS53-213ENST00000572334 MIF4GDA9UHW6 222 aaKnown RBP6.44□□□□□ -1.38
VPS53-213ENST00000572334 AGPSO00116 658 aa6.44□□□□□ -1.38
VPS53-213ENST00000572334 QSOX1O00391 747 aa6.44□□□□□ -1.38
VPS53-213ENST00000572334 E2F3O00716 465 aa6.44□□□□□ -1.38
VPS53-213ENST00000572334 PSMD3O43242 534 aa6.44□□□□□ -1.38
VPS53-213ENST00000572334 LIASO43766 372 aa6.44□□□□□ -1.38
VPS53-213ENST00000572334 CTSVO60911 334 aa6.44□□□□□ -1.38
VPS53-213ENST00000572334 ZNF189O75820 626 aaPredicted RBP6.44□□□□□ -1.38
VPS53-213ENST00000572334 DDAH2O95865 285 aa6.44□□□□□ -1.38
VPS53-213ENST00000572334 OR56A5P0C7T3 313 aa6.44□□□□□ -1.38
VPS53-213ENST00000572334 ZSCAN5DPP0CG00 497 aa6.44□□□□□ -1.38
VPS53-213ENST00000572334 MMP11P24347 488 aa6.44□□□□□ -1.38
VPS53-213ENST00000572334 ADRA1DP25100 572 aa6.44□□□□□ -1.38
VPS53-213ENST00000572334 ARNTP27540 789 aa6.44□□□□□ -1.38
VPS53-213ENST00000572334 PSMB5P28074 263 aa6.44□□□□□ -1.38
VPS53-213ENST00000572334 GRIA3P42263 894 aa6.44□□□□□ -1.38
VPS53-213ENST00000572334 EFNA3P52797 238 aa6.44□□□□□ -1.38
VPS53-213ENST00000572334 NAP1L1P55209 391 aaKnown RBP6.44□□□□□ -1.38
VPS53-213ENST00000572334 SARNPP82979 210 aaKnown RBP6.44□□□□□ -1.38
VPS53-213ENST00000572334 HSPA14Q0VDF9 509 aa6.44□□□□□ -1.38
VPS53-213ENST00000572334 CDH17Q12864 832 aa6.44□□□□□ -1.38
VPS53-213ENST00000572334 GBX1Q14549 363 aa6.44□□□□□ -1.38
VPS53-213ENST00000572334 HIF1AQ16665 826 aa6.44□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms