RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 AGTRAPQ6RW13 159 aa7.75□□□□□ -1.17
VPS39-213ENST00000570062 SLC36A4Q6YBV0 504 aa7.75□□□□□ -1.17
VPS39-213ENST00000570062 SYVN1Q86TM6 617 aa7.75□□□□□ -1.17
VPS39-213ENST00000570062 RGL4Q8IZJ4 473 aa7.75□□□□□ -1.17
VPS39-213ENST00000570062 SNX31Q8N9S9 440 aa7.75□□□□□ -1.17
VPS39-213ENST00000570062 AVL9Q8NBF6 648 aa7.75□□□□□ -1.17
VPS39-213ENST00000570062 KYQ8NBH2 561 aa7.75□□□□□ -1.17
VPS39-213ENST00000570062 GLB1L3Q8NCI6 653 aaPredicted RBP7.75□□□□□ -1.17
VPS39-213ENST00000570062 TSTD1Q8NFU3 115 aa7.75□□□□□ -1.17
VPS39-213ENST00000570062 CADM4Q8NFZ8 388 aa7.75□□□□□ -1.17
VPS39-213ENST00000570062 OR5K2Q8NHB8 316 aa7.75□□□□□ -1.17
VPS39-213ENST00000570062 MAPK15Q8TD08 544 aa7.75□□□□□ -1.17
VPS39-213ENST00000570062 STARD8Q92502 1023 aa7.75□□□□□ -1.17
VPS39-213ENST00000570062 TFGQ92734 400 aaPredicted RBP7.75□□□□□ -1.17
VPS39-213ENST00000570062 SLC7A6OSQ96CW6 309 aaPredicted RBP7.75□□□□□ -1.17
VPS39-213ENST00000570062 WDR92Q96MX6 357 aa7.75□□□□□ -1.17
VPS39-213ENST00000570062 UHRF1Q96T88 793 aaPredicted RBP7.75□□□□□ -1.17
VPS39-213ENST00000570062 ZBTB18Q99592 522 aa7.75□□□□□ -1.17
VPS39-213ENST00000570062 OCSTAMPQ9BR26 566 aa7.75□□□□□ -1.17
VPS39-213ENST00000570062 TMEM79Q9BSE2 394 aa7.75□□□□□ -1.17
VPS39-213ENST00000570062 EFCAB11Q9BUY7 163 aa7.75□□□□□ -1.17
VPS39-213ENST00000570062 TBC1D10AQ9BXI6 508 aa7.75□□□□□ -1.17
VPS39-213ENST00000570062 SHCBP1LQ9BZQ2 653 aa7.75□□□□□ -1.17
VPS39-213ENST00000570062 ZNF385DQ9H6B1 395 aa7.75□□□□□ -1.17
VPS39-213ENST00000570062 MVB12BQ9H7P6 319 aa7.75□□□□□ -1.17
VPS39-213ENST00000570062 AKTIPQ9H8T0 292 aa7.75□□□□□ -1.17
VPS39-213ENST00000570062 ARL8BQ9NVJ2 186 aa7.75□□□□□ -1.17
VPS39-213ENST00000570062 GID8Q9NWU2 228 aa7.75□□□□□ -1.17
VPS39-213ENST00000570062 ASIC5Q9NY37 505 aa7.75□□□□□ -1.17
VPS39-213ENST00000570062 TAS2R1Q9NYW7 299 aa7.75□□□□□ -1.17
VPS39-213ENST00000570062 NOP53Q9NZM5 478 aaKnown RBP7.75□□□□□ -1.17
VPS39-213ENST00000570062 ZIM2Q9NZV7 527 aa7.75□□□□□ -1.17
VPS39-213ENST00000570062 ARMCX1Q9P291 453 aa7.75□□□□□ -1.17
VPS39-213ENST00000570062 ZNHIT2Q9UHR6 403 aa7.75□□□□□ -1.17
VPS39-213ENST00000570062 FBXL21Q9UKT6 434 aa7.75□□□□□ -1.17
VPS39-213ENST00000570062 IKZF3Q9UKT9 509 aa7.75□□□□□ -1.17
VPS39-213ENST00000570062 ASF1AQ9Y294 204 aa7.75□□□□□ -1.17
VPS39-213ENST00000570062 AP3M1Q9Y2T2 418 aa7.75□□□□□ -1.17
VPS39-213ENST00000570062 HCN4Q9Y3Q4 1203 aa7.75□□□□□ -1.17
VPS39-213ENST00000570062 TSC22D4Q9Y3Q8 395 aa7.75□□□□□ -1.17
VPS39-213ENST00000570062 OR5K4A6NMS3 321 aa7.74□□□□□ -1.17
VPS39-213ENST00000570062 ARHGEF33A8MVX0 844 aa7.74□□□□□ -1.17
VPS39-213ENST00000570062 H0YIV9 168 aa7.74□□□□□ -1.17
VPS39-213ENST00000570062 PLK4O00444 970 aa7.74□□□□□ -1.17
VPS39-213ENST00000570062 GSC2O15499 205 aa7.74□□□□□ -1.17
VPS39-213ENST00000570062 RSL1D1O76021 490 aaKnown RBP7.74□□□□□ -1.17
VPS39-213ENST00000570062 MYO1DO94832 1006 aa7.74□□□□□ -1.17
VPS39-213ENST00000570062 OR4F21O95013 312 aa7.74□□□□□ -1.17
VPS39-213ENST00000570062 CEACAM5P06731 702 aa7.74□□□□□ -1.17
VPS39-213ENST00000570062 ASGR2P07307 311 aa7.74□□□□□ -1.17
VPS39-213ENST00000570062 PRR35P0CG20 571 aa7.74□□□□□ -1.17
VPS39-213ENST00000570062 PRPS2P11908 318 aa7.74□□□□□ -1.17
VPS39-213ENST00000570062 COX4I1P13073 169 aa7.74□□□□□ -1.17
VPS39-213ENST00000570062 JUPP14923 745 aa7.74□□□□□ -1.17
VPS39-213ENST00000570062 GABRG2P18507 467 aa7.74□□□□□ -1.17
VPS39-213ENST00000570062 GSTM2P28161 218 aa7.74□□□□□ -1.17
VPS39-213ENST00000570062 CD6P30203 668 aa7.74□□□□□ -1.17
VPS39-213ENST00000570062 PGM1P36871 562 aa7.74□□□□□ -1.17
VPS39-213ENST00000570062 RPS9P46781 194 aaKnown RBP7.74□□□□□ -1.17
VPS39-213ENST00000570062 THOP1P52888 689 aa7.74□□□□□ -1.17
VPS39-213ENST00000570062 PFN3P60673 137 aa7.74□□□□□ -1.17
VPS39-213ENST00000570062 CSTF3Q12996 717 aaKnown RBP7.74□□□□□ -1.17
VPS39-213ENST00000570062 TRAF3Q13114 568 aa7.74□□□□□ -1.17
VPS39-213ENST00000570062 E2F2Q14209 437 aa7.74□□□□□ -1.17
VPS39-213ENST00000570062 FASTKQ14296 549 aaKnown RBP7.74□□□□□ -1.17
VPS39-213ENST00000570062 KRT33BQ14525 404 aa7.74□□□□□ -1.17
VPS39-213ENST00000570062 KIF19Q2TAC6 998 aa7.74□□□□□ -1.17
VPS39-213ENST00000570062 MMEL1Q495T6 779 aa7.74□□□□□ -1.17
VPS39-213ENST00000570062 PYCR3Q53H96 274 aa7.74□□□□□ -1.17
VPS39-213ENST00000570062 KIAA0895LQ68EN5 471 aa7.74□□□□□ -1.17
VPS39-213ENST00000570062 CLEC6AQ6EIG7 209 aa7.74□□□□□ -1.17
VPS39-213ENST00000570062 CAPRIN2Q6IMN6 1127 aaKnown RBP7.74□□□□□ -1.17
VPS39-213ENST00000570062 IL27RAQ6UWB1 636 aa7.74□□□□□ -1.17
VPS39-213ENST00000570062 HACD2Q6Y1H2 254 aa7.74□□□□□ -1.17
VPS39-213ENST00000570062 ATG14Q6ZNE5 492 aa7.74□□□□□ -1.17
VPS39-213ENST00000570062 C11orf96Q7Z7L8 435 aa7.74□□□□□ -1.17
VPS39-213ENST00000570062 THOC6Q86W42 341 aaKnown RBP7.74□□□□□ -1.17
VPS39-213ENST00000570062 VRK3Q8IV63 474 aa7.74□□□□□ -1.17
VPS39-213ENST00000570062 ZNF547Q8IVP9 402 aa7.74□□□□□ -1.17
VPS39-213ENST00000570062 SYTL1Q8IYJ3 562 aa7.74□□□□□ -1.17
VPS39-213ENST00000570062 KRT78Q8N1N4 520 aa7.74□□□□□ -1.17
VPS39-213ENST00000570062 SPEM1Q8N4L4 309 aa7.74□□□□□ -1.17
VPS39-213ENST00000570062 TBC1D19Q8N5T2 526 aa7.74□□□□□ -1.17
VPS39-213ENST00000570062 CDYL2Q8N8U2 506 aa7.74□□□□□ -1.17
VPS39-213ENST00000570062 PLA2G15Q8NCC3 412 aa7.74□□□□□ -1.17
VPS39-213ENST00000570062 RNF217Q8TC41 542 aa7.74□□□□□ -1.17
VPS39-213ENST00000570062 SMPDL3AQ92484 453 aa7.74□□□□□ -1.17
VPS39-213ENST00000570062 DLG3Q92796 817 aa7.74□□□□□ -1.17
VPS39-213ENST00000570062 USP7Q93009 1102 aa7.74□□□□□ -1.17
VPS39-213ENST00000570062 POP5Q969H6 163 aaKnown RBP7.74□□□□□ -1.17
VPS39-213ENST00000570062 ROPN1LQ96C74 230 aa7.74□□□□□ -1.17
VPS39-213ENST00000570062 WDR34Q96EX3 536 aa7.74□□□□□ -1.17
VPS39-213ENST00000570062 NSUN5Q96P11 429 aaKnown RBP7.74□□□□□ -1.17
VPS39-213ENST00000570062 PKP4Q99569 1192 aa7.74□□□□□ -1.17
VPS39-213ENST00000570062 HOPXQ9BPY8 73 aaPredicted RBP7.74□□□□□ -1.17
VPS39-213ENST00000570062 OR52A5Q9H2C5 316 aa7.74□□□□□ -1.17
VPS39-213ENST00000570062 BRF2Q9HAW0 419 aa7.74□□□□□ -1.17
VPS39-213ENST00000570062 CCDC177Q9NQR7 707 aaPredicted RBP7.74□□□□□ -1.17
VPS39-213ENST00000570062 MBNL1Q9NR56 388 aaKnown RBP7.74□□□□□ -1.17
VPS39-213ENST00000570062 SDR39U1Q9NRG7 319 aaPredicted RBP7.74□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms