RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 JUPP14923 745 aa9.45□□□□□ -0.9
CLK3-208ENST00000562626 CREB1P16220 341 aa9.45□□□□□ -0.9
CLK3-208ENST00000562626 TFEBP19484 476 aa9.45□□□□□ -0.9
CLK3-208ENST00000562626 CRABP2P29373 138 aa9.45□□□□□ -0.9
CLK3-208ENST00000562626 CCNFP41002 786 aa9.45□□□□□ -0.9
CLK3-208ENST00000562626 PNLIPRP1P54315 467 aa9.45□□□□□ -0.9
CLK3-208ENST00000562626 ZNF844Q08AG5 666 aa9.45□□□□□ -0.9
CLK3-208ENST00000562626 SP140Q13342 867 aa9.45□□□□□ -0.9
CLK3-208ENST00000562626 C3orf38Q5JPI3 329 aa9.45□□□□□ -0.9
CLK3-208ENST00000562626 CACHD1Q5VU97 1274 aa9.45□□□□□ -0.9
CLK3-208ENST00000562626 KIAA1614Q5VZ46 1190 aa9.45□□□□□ -0.9
CLK3-208ENST00000562626 FAM219BQ5XKK7 198 aa9.45□□□□□ -0.9
CLK3-208ENST00000562626 LRRC8EQ6NSJ5 796 aa9.45□□□□□ -0.9
CLK3-208ENST00000562626 AGTRAPQ6RW13 159 aa9.45□□□□□ -0.9
CLK3-208ENST00000562626 SPESP1Q6UW49 350 aa9.45□□□□□ -0.9
CLK3-208ENST00000562626 TIFABQ6ZNK6 161 aa9.45□□□□□ -0.9
CLK3-208ENST00000562626 CDHR3Q6ZTQ4 885 aa9.45□□□□□ -0.9
CLK3-208ENST00000562626 PRSS42Q7Z5A4 293 aa9.45□□□□□ -0.9
CLK3-208ENST00000562626 TDRPQ86YL5 185 aa9.45□□□□□ -0.9
CLK3-208ENST00000562626 IQCKQ8N0W5 287 aa9.45□□□□□ -0.9
CLK3-208ENST00000562626 TMEM151AQ8N4L1 468 aa9.45□□□□□ -0.9
CLK3-208ENST00000562626 BMPERQ8N8U9 685 aa9.45□□□□□ -0.9
CLK3-208ENST00000562626 OR2A1Q8NGT9 310 aa9.45□□□□□ -0.9
CLK3-208ENST00000562626 WDR48Q8TAF3 677 aa9.45□□□□□ -0.9
CLK3-208ENST00000562626 HMGCLL1Q8TB92 370 aa9.45□□□□□ -0.9
CLK3-208ENST00000562626 EXT2Q93063 718 aa9.45□□□□□ -0.9
CLK3-208ENST00000562626 ESAMQ96AP7 390 aa9.45□□□□□ -0.9
CLK3-208ENST00000562626 PYCR2Q96C36 320 aa9.45□□□□□ -0.9
CLK3-208ENST00000562626 ZIM3Q96PE6 472 aa9.45□□□□□ -0.9
CLK3-208ENST00000562626 TMEM79Q9BSE2 394 aa9.45□□□□□ -0.9
CLK3-208ENST00000562626 ACAT2Q9BWD1 397 aa9.45□□□□□ -0.9
CLK3-208ENST00000562626 TMEM121BQ9BXQ6 578 aaPredicted RBP9.45□□□□□ -0.9
CLK3-208ENST00000562626 PITPNM3Q9BZ71 974 aa9.45□□□□□ -0.9
CLK3-208ENST00000562626 C12orf65Q9H3J6 166 aaKnown RBP9.45□□□□□ -0.9
CLK3-208ENST00000562626 EPB41L1Q9H4G0 881 aa9.45□□□□□ -0.9
CLK3-208ENST00000562626 ALG9Q9H6U8 611 aa9.45□□□□□ -0.9
CLK3-208ENST00000562626 APMAPQ9HDC9 416 aa9.45□□□□□ -0.9
CLK3-208ENST00000562626 FAM60AQ9NP50 221 aa9.45□□□□□ -0.9
CLK3-208ENST00000562626 SLC6A20Q9NP91 592 aa9.45□□□□□ -0.9
CLK3-208ENST00000562626 ABCF3Q9NUQ8 709 aa9.45□□□□□ -0.9
CLK3-208ENST00000562626 SIDT1Q9NXL6 827 aaKnown RBP9.45□□□□□ -0.9
CLK3-208ENST00000562626 OR6C2Q9NZP2 312 aa9.45□□□□□ -0.9
CLK3-208ENST00000562626 SPATA7Q9P0W8 599 aa9.45□□□□□ -0.9
CLK3-208ENST00000562626 SEMA5BQ9P283 1151 aa9.45□□□□□ -0.9
CLK3-208ENST00000562626 SATB2Q9UPW6 733 aa9.45□□□□□ -0.9
CLK3-208ENST00000562626 IKBKGQ9Y6K9 419 aa9.45□□□□□ -0.9
CLK3-208ENST00000562626 FLNBO75369 2602 aaKnown RBP9.45□□□□□ -0.9
CLK3-208ENST00000562626 ASPMQ8IZT6 3477 aa9.44□□□□□ -0.9
CLK3-208ENST00000562626 A0A087X1B8 175 aa9.44□□□□□ -0.9
CLK3-208ENST00000562626 IGKV1-8A0A0C4DH67 115 aa9.44□□□□□ -0.9
CLK3-208ENST00000562626 TLDC2A0PJX2 215 aa9.44□□□□□ -0.9
CLK3-208ENST00000562626 PIPSLA2A3N6 862 aa9.44□□□□□ -0.9
CLK3-208ENST00000562626 CCDC151A5D8V7 595 aa9.44□□□□□ -0.9
CLK3-208ENST00000562626 TLCD2A6NGC4 264 aa9.44□□□□□ -0.9
CLK3-208ENST00000562626 LRRC14BA6NHZ5 514 aa9.44□□□□□ -0.9
CLK3-208ENST00000562626 NCF1BA6NI72 391 aaPredicted RBP9.44□□□□□ -0.9
CLK3-208ENST00000562626 NCF1CA8MVU1 366 aaPredicted RBP9.44□□□□□ -0.9
CLK3-208ENST00000562626 ISM1B1AKI9 464 aa9.44□□□□□ -0.9
CLK3-208ENST00000562626 UBXN8O00124 270 aa9.44□□□□□ -0.9
CLK3-208ENST00000562626 KLHL2O95198 593 aa9.44□□□□□ -0.9
CLK3-208ENST00000562626 MPOP05164 745 aa9.44□□□□□ -0.9
CLK3-208ENST00000562626 LTA4HP09960 611 aaKnown RBP9.44□□□□□ -0.9
CLK3-208ENST00000562626 EBLN1P0CF75 366 aa9.44□□□□□ -0.9
CLK3-208ENST00000562626 FGF3P11487 239 aaPredicted RBP9.44□□□□□ -0.9
CLK3-208ENST00000562626 NCF1P14598 390 aaPredicted RBP9.44□□□□□ -0.9
CLK3-208ENST00000562626 CYP2A7P20853 494 aa9.44□□□□□ -0.9
CLK3-208ENST00000562626 MAGP20916 626 aa9.44□□□□□ -0.9
CLK3-208ENST00000562626 TBPL1P62380 186 aa9.44□□□□□ -0.9
CLK3-208ENST00000562626 TSTA3Q13630 321 aaPredicted RBP9.44□□□□□ -0.9
CLK3-208ENST00000562626 TGFBIQ15582 683 aa9.44□□□□□ -0.9
CLK3-208ENST00000562626 CLPPQ16740 277 aaPredicted RBP9.44□□□□□ -0.9
CLK3-208ENST00000562626 TECRLQ5HYJ1 363 aa9.44□□□□□ -0.9
CLK3-208ENST00000562626 ANKS6Q68DC2 871 aa9.44□□□□□ -0.9
CLK3-208ENST00000562626 FCRL6Q6DN72 434 aa9.44□□□□□ -0.9
CLK3-208ENST00000562626 C16orf46Q6P387 395 aa9.44□□□□□ -0.9
CLK3-208ENST00000562626 FOXR1Q6PIV2 292 aa9.44□□□□□ -0.9
CLK3-208ENST00000562626 PLXDC1Q8IUK5 500 aa9.44□□□□□ -0.9
CLK3-208ENST00000562626 CACTIN-AS1Q8N1I8 211 aa9.44□□□□□ -0.9
CLK3-208ENST00000562626 GALNT15Q8N3T1 639 aa9.44□□□□□ -0.9
CLK3-208ENST00000562626 KLHL6Q8WZ60 621 aa9.44□□□□□ -0.9
CLK3-208ENST00000562626 ANKRD7Q92527 254 aa9.44□□□□□ -0.9
CLK3-208ENST00000562626 KIAA1191Q96A73 305 aa9.44□□□□□ -0.9
CLK3-208ENST00000562626 RHBDF1Q96CC6 855 aa9.44□□□□□ -0.9
CLK3-208ENST00000562626 LIN37Q96GY3 246 aaPredicted RBP9.44□□□□□ -0.9
CLK3-208ENST00000562626 TRAPPC9Q96Q05 1148 aa9.44□□□□□ -0.9
CLK3-208ENST00000562626 OR4K3Q96R72 315 aa9.44□□□□□ -0.9
CLK3-208ENST00000562626 MIPEPQ99797 713 aa9.44□□□□□ -0.9
CLK3-208ENST00000562626 ZNF768Q9H5H4 540 aaKnown RBP9.44□□□□□ -0.9
CLK3-208ENST00000562626 CUEDC1Q9NWM3 386 aaPredicted RBP9.44□□□□□ -0.9
CLK3-208ENST00000562626 ARL15Q9NXU5 204 aa9.44□□□□□ -0.9
CLK3-208ENST00000562626 TMEM216Q9P0N5 145 aa9.44□□□□□ -0.9
CLK3-208ENST00000562626 TAC3Q9UHF0 121 aa9.44□□□□□ -0.9
CLK3-208ENST00000562626 LGALS13Q9UHV8 139 aa9.44□□□□□ -0.9
CLK3-208ENST00000562626 EMCNQ9ULC0 261 aa9.44□□□□□ -0.9
CLK3-208ENST00000562626 NOVA2Q9UNW9 492 aaKnown RBP9.44□□□□□ -0.9
CLK3-208ENST00000562626 LOXL2Q9Y4K0 774 aa9.44□□□□□ -0.9
CLK3-208ENST00000562626 NEUROG3Q9Y4Z2 214 aa9.44□□□□□ -0.9
CLK3-208ENST00000562626 OARD1Q9Y530 152 aa9.44□□□□□ -0.9
CLK3-208ENST00000562626 IGF2RP11717 2491 aa9.43□□□□□ -0.9
CLK3-208ENST00000562626 CCDC187A0A096LP49 1063 aa9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms