RNA–Protein interactions for RNA: ENST00000560634.1

CSPG4P11-201, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 11, humanhuman

BASIC

Gene CSPG4P11, Length 4,910 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P11-201ENST00000560634 ATP6V1C2Q8NEY4 427 aa12.93□□□□□ -0.34
CSPG4P11-201ENST00000560634 CMASQ8NFW8 434 aaPredicted RBP12.93□□□□□ -0.34
CSPG4P11-201ENST00000560634 OR6K6Q8NGW6 343 aa12.93□□□□□ -0.34
CSPG4P11-201ENST00000560634 SIPA1Q96FS4 1042 aa12.93□□□□□ -0.34
CSPG4P11-201ENST00000560634 DMRTB1Q96MA1 342 aa12.93□□□□□ -0.34
CSPG4P11-201ENST00000560634 TUBA1CQ9BQE3 449 aa12.93□□□□□ -0.34
CSPG4P11-201ENST00000560634 PCDHAC1Q9H158 963 aa12.93□□□□□ -0.34
CSPG4P11-201ENST00000560634 C1orf21Q9H246 121 aa12.93□□□□□ -0.34
CSPG4P11-201ENST00000560634 FBXO9Q9UK97 447 aaPredicted RBP12.93□□□□□ -0.34
CSPG4P11-201ENST00000560634 MAU2Q9Y6X3 613 aa12.93□□□□□ -0.34
CSPG4P11-201ENST00000560634 PPP1R11O60927 126 aaPredicted RBP12.93□□□□□ -0.34
CSPG4P11-201ENST00000560634 CAPN15O75808 1086 aa12.93□□□□□ -0.34
CSPG4P11-201ENST00000560634 IFNA21P01568 189 aa12.93□□□□□ -0.34
CSPG4P11-201ENST00000560634 HLA-DPB1P04440 258 aa12.93□□□□□ -0.34
CSPG4P11-201ENST00000560634 PCCBP05166 539 aa12.93□□□□□ -0.34
CSPG4P11-201ENST00000560634 APLP1P51693 650 aa12.93□□□□□ -0.34
CSPG4P11-201ENST00000560634 CSTF1Q05048 431 aaKnown RBP12.93□□□□□ -0.34
CSPG4P11-201ENST00000560634 GXYLT1Q4G148 440 aa12.93□□□□□ -0.34
CSPG4P11-201ENST00000560634 PLPP4Q5VZY2 271 aa12.93□□□□□ -0.34
CSPG4P11-201ENST00000560634 ANKRD23Q86SG2 305 aa12.93□□□□□ -0.34
CSPG4P11-201ENST00000560634 UBE2J2Q8N2K1 259 aa12.93□□□□□ -0.34
CSPG4P11-201ENST00000560634 GAL3ST4Q96RP7 486 aa12.93□□□□□ -0.34
CSPG4P11-201ENST00000560634 WRAP53Q9BUR4 548 aaKnown RBP12.93□□□□□ -0.34
CSPG4P11-201ENST00000560634 SLC29A3Q9BZD2 475 aa12.93□□□□□ -0.34
CSPG4P11-201ENST00000560634 SRMSQ9H3Y6 488 aa12.93□□□□□ -0.34
CSPG4P11-201ENST00000560634 ZDHHC18Q9NUE0 388 aa12.93□□□□□ -0.34
CSPG4P11-201ENST00000560634 TMLHEQ9NVH6 421 aa12.93□□□□□ -0.34
CSPG4P11-201ENST00000560634 RIMKLBQ9ULI2 386 aa12.93□□□□□ -0.34
CSPG4P11-201ENST00000560634 OAZ3Q9UMX2 235 aa12.93□□□□□ -0.34
CSPG4P11-201ENST00000560634 FKTNO75072 461 aa12.93□□□□□ -0.34
CSPG4P11-201ENST00000560634 DUSP11O75319 330 aaKnown RBP12.93□□□□□ -0.34
CSPG4P11-201ENST00000560634 RCBTB2O95199 551 aa12.93□□□□□ -0.34
CSPG4P11-201ENST00000560634 PRLP01236 227 aa12.93□□□□□ -0.34
CSPG4P11-201ENST00000560634 NDUFS1P28331 727 aa12.93□□□□□ -0.34
CSPG4P11-201ENST00000560634 CCKBRP32239 447 aa12.93□□□□□ -0.34
CSPG4P11-201ENST00000560634 HCAR3P49019 387 aa12.93□□□□□ -0.34
CSPG4P11-201ENST00000560634 MADCAM1Q13477 382 aa12.93□□□□□ -0.34
CSPG4P11-201ENST00000560634 ARFRP1Q13795 201 aa12.93□□□□□ -0.34
CSPG4P11-201ENST00000560634 C1orf189Q5VU69 101 aa12.93□□□□□ -0.34
CSPG4P11-201ENST00000560634 AMZ2Q86W34 360 aa12.93□□□□□ -0.34
CSPG4P11-201ENST00000560634 TOMM5Q8N4H5 51 aa12.93□□□□□ -0.34
CSPG4P11-201ENST00000560634 PNLDC1Q8NA58 520 aaKnown RBP12.93□□□□□ -0.34
CSPG4P11-201ENST00000560634 WFIKKN2Q8TEU8 576 aa12.93□□□□□ -0.34
CSPG4P11-201ENST00000560634 LYARQ9NX58 379 aaKnown RBP12.93□□□□□ -0.34
CSPG4P11-201ENST00000560634 ABI3Q9P2A4 366 aa12.93□□□□□ -0.34
CSPG4P11-201ENST00000560634 P2RX2Q9UBL9 471 aa12.93□□□□□ -0.34
CSPG4P11-201ENST00000560634 RGS17Q9UGC6 210 aaPredicted RBP12.93□□□□□ -0.34
CSPG4P11-201ENST00000560634 FCF1Q9Y324 198 aaKnown RBP12.93□□□□□ -0.34
CSPG4P11-201ENST00000560634 MYBPHLA2RUH7 354 aa12.92□□□□□ -0.34
CSPG4P11-201ENST00000560634 TLR4O00206 839 aa12.92□□□□□ -0.34
CSPG4P11-201ENST00000560634 ARPC2O15144 300 aa12.92□□□□□ -0.34
CSPG4P11-201ENST00000560634 FAM163BP0C2L3 166 aa12.92□□□□□ -0.34
CSPG4P11-201ENST00000560634 MYCLP1P12525 358 aaPredicted RBP12.92□□□□□ -0.34
CSPG4P11-201ENST00000560634 ATF4P18848 351 aaPredicted RBP12.92□□□□□ -0.34
CSPG4P11-201ENST00000560634 PTGS2P35354 604 aa12.92□□□□□ -0.34
CSPG4P11-201ENST00000560634 DSTNP60981 165 aa12.92□□□□□ -0.34
CSPG4P11-201ENST00000560634 RPP38P78345 283 aaKnown RBP12.92□□□□□ -0.34
CSPG4P11-201ENST00000560634 BTN3A2P78410 334 aa12.92□□□□□ -0.34
CSPG4P11-201ENST00000560634 ZNF460Q14592 562 aa12.92□□□□□ -0.34
CSPG4P11-201ENST00000560634 PUM1Q14671 1186 aaKnown RBP eCLIP12.92□□□□□ -0.34
CSPG4P11-201ENST00000560634 ABCA11PQ4W5N1 156 aa12.92□□□□□ -0.34
CSPG4P11-201ENST00000560634 C4orf46Q504U0 113 aa12.92□□□□□ -0.34
CSPG4P11-201ENST00000560634 SPIN4Q56A73 249 aa12.92□□□□□ -0.34
CSPG4P11-201ENST00000560634 ESAMQ96AP7 390 aa12.92□□□□□ -0.34
CSPG4P11-201ENST00000560634 MTERF1Q99551 399 aaKnown RBP12.92□□□□□ -0.34
CSPG4P11-201ENST00000560634 PTPN18Q99952 460 aa12.92□□□□□ -0.34
CSPG4P11-201ENST00000560634 ITPAQ9BY32 194 aa12.92□□□□□ -0.34
CSPG4P11-201ENST00000560634 TMED5Q9Y3A6 229 aa12.92□□□□□ -0.34
CSPG4P11-201ENST00000560634 SNX10Q9Y5X0 201 aa12.92□□□□□ -0.34
CSPG4P11-201ENST00000560634 CPQQ9Y646 472 aa12.92□□□□□ -0.34
CSPG4P11-201ENST00000560634 DEPDC5O75140 1603 aa12.92□□□□□ -0.34
CSPG4P11-201ENST00000560634 TRBV23OR9-2A0A075B6M9 112 aa12.92□□□□□ -0.34
CSPG4P11-201ENST00000560634 H1F0P07305 194 aaKnown RBP12.92□□□□□ -0.34
CSPG4P11-201ENST00000560634 CLUP10909 449 aa12.92□□□□□ -0.34
CSPG4P11-201ENST00000560634 AHCYP23526 432 aa12.92□□□□□ -0.34
CSPG4P11-201ENST00000560634 FMO3P31513 532 aa12.92□□□□□ -0.34
CSPG4P11-201ENST00000560634 MAGEA2P43356 314 aa12.92□□□□□ -0.34
CSPG4P11-201ENST00000560634 BLKP51451 505 aa12.92□□□□□ -0.34
CSPG4P11-201ENST00000560634 GDF10P55107 478 aa12.92□□□□□ -0.34
CSPG4P11-201ENST00000560634 COL21A1Q96P44 957 aa12.92□□□□□ -0.34
CSPG4P11-201ENST00000560634 ELAC1Q9H777 363 aaKnown RBP12.92□□□□□ -0.34
CSPG4P11-201ENST00000560634 APOBEC3GQ9HC16 384 aaKnown RBP12.92□□□□□ -0.34
CSPG4P11-201ENST00000560634 ACTR3BQ9P1U1 418 aa12.92□□□□□ -0.34
CSPG4P11-201ENST00000560634 MALT1Q9UDY8 824 aa12.92□□□□□ -0.34
CSPG4P11-201ENST00000560634 CD84Q9UIB8 345 aa12.92□□□□□ -0.34
CSPG4P11-201ENST00000560634 ELOA3DA6NLF2 546 aaPredicted RBP12.92□□□□□ -0.34
CSPG4P11-201ENST00000560634 TMEM150CB9EJG8 249 aa12.92□□□□□ -0.34
CSPG4P11-201ENST00000560634 TREHO43280 583 aa12.92□□□□□ -0.34
CSPG4P11-201ENST00000560634 UGT1A9O60656 530 aa12.92□□□□□ -0.34
CSPG4P11-201ENST00000560634 EOMESO95936 686 aa12.92□□□□□ -0.34
CSPG4P11-201ENST00000560634 NR2C1P13056 603 aa12.92□□□□□ -0.34
CSPG4P11-201ENST00000560634 ZNF3P17036 446 aa12.92□□□□□ -0.34
CSPG4P11-201ENST00000560634 PTPN2P17706 415 aa12.92□□□□□ -0.34
CSPG4P11-201ENST00000560634 UGT1A6P19224 532 aa12.92□□□□□ -0.34
CSPG4P11-201ENST00000560634 UGT1A1P22309 533 aa12.92□□□□□ -0.34
CSPG4P11-201ENST00000560634 UGT1A4P22310 534 aa12.92□□□□□ -0.34
CSPG4P11-201ENST00000560634 SMSP52788 366 aa12.92□□□□□ -0.34
CSPG4P11-201ENST00000560634 IST1P53990 364 aa12.92□□□□□ -0.34
CSPG4P11-201ENST00000560634 NFKB2Q00653 900 aa12.92□□□□□ -0.34
CSPG4P11-201ENST00000560634 SLC13A2Q13183 592 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms