RNA–Protein interactions for RNA: ENST00000560445.1

TPM1-223, Transcript of tropomyosin 1, human

TSL 3 BASIC

Gene TPM1, Length 485 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM1-223	ENST00000560445	VWA5B1	Q5TIE3	1220 aa		13.54	□□□□□ -0.24
TPM1-223	ENST00000560445	PRAMEF17	Q5VTA0	474 aa		13.54	□□□□□ -0.24
TPM1-223	ENST00000560445	ZNF385C	Q66K41	422 aa	Predicted RBP	13.54	□□□□□ -0.24
TPM1-223	ENST00000560445	NEPRO	Q6NW34	567 aa		13.54	□□□□□ -0.24
TPM1-223	ENST00000560445	NEK10	Q6ZWH5	1172 aa		13.54	□□□□□ -0.24
TPM1-223	ENST00000560445	MRGPRE	Q86SM8	312 aa		13.54	□□□□□ -0.24
TPM1-223	ENST00000560445	PRUNE1	Q86TP1	453 aa		13.54	□□□□□ -0.24
TPM1-223	ENST00000560445	LDB1	Q86U70	411 aa	Predicted RBP	13.54	□□□□□ -0.24
TPM1-223	ENST00000560445	MCAT	Q8IVS2	390 aa	Known RBP	13.54	□□□□□ -0.24
TPM1-223	ENST00000560445	KRT222	Q8N1A0	295 aa		13.54	□□□□□ -0.24
TPM1-223	ENST00000560445	ZBTB2	Q8N680	514 aa		13.54	□□□□□ -0.24
TPM1-223	ENST00000560445	PRELID2	Q8N945	189 aa		13.54	□□□□□ -0.24
TPM1-223	ENST00000560445	LMNTD1	Q8N9Z9	388 aa		13.54	□□□□□ -0.24
TPM1-223	ENST00000560445	FLVCR1-AS1	Q8TAF5	88 aa		13.54	□□□□□ -0.24
TPM1-223	ENST00000560445	LPGAT1	Q92604	370 aa		13.54	□□□□□ -0.24
TPM1-223	ENST00000560445	MFSD3	Q96ES6	412 aa		13.54	□□□□□ -0.24
TPM1-223	ENST00000560445	RUFY1	Q96T51	708 aa		13.54	□□□□□ -0.24
TPM1-223	ENST00000560445	SELENOS	Q9BQE4	189 aa		13.54	□□□□□ -0.24
TPM1-223	ENST00000560445	SLC29A3	Q9BZD2	475 aa		13.54	□□□□□ -0.24
TPM1-223	ENST00000560445	MLXIPL	Q9NP71	852 aa		13.54	□□□□□ -0.24
TPM1-223	ENST00000560445	ENAM	Q9NRM1	1142 aa		13.54	□□□□□ -0.24
TPM1-223	ENST00000560445	ANKMY1	Q9P2S6	941 aa		13.54	□□□□□ -0.24
TPM1-223	ENST00000560445	VPS4A	Q9UN37	437 aa		13.54	□□□□□ -0.24
TPM1-223	ENST00000560445	KLK4	Q9Y5K2	254 aa		13.54	□□□□□ -0.24
TPM1-223	ENST00000560445	NBAS	A2RRP1	2371 aa		13.53	□□□□□ -0.24
TPM1-223	ENST00000560445	CTAGE9	A4FU28	777 aa		13.53	□□□□□ -0.24
TPM1-223	ENST00000560445	PYCARD-AS1	I3L0S3	204 aa		13.53	□□□□□ -0.24
TPM1-223	ENST00000560445	PRPF4	O43172	522 aa	Known RBP eCLIP	13.53	□□□□□ -0.24	3e-6	■■□□□ 14.1
TPM1-223	ENST00000560445	KIF5C	O60282	957 aa		13.53	□□□□□ -0.24
TPM1-223	ENST00000560445	DNAJB5	O75953	348 aa		13.53	□□□□□ -0.24
TPM1-223	ENST00000560445	C1orf105	O95561	183 aa		13.53	□□□□□ -0.24
TPM1-223	ENST00000560445	CAPN1	P07384	714 aa		13.53	□□□□□ -0.24
TPM1-223	ENST00000560445	ERVK-10	P10266	1014 aa		13.53	□□□□□ -0.24
TPM1-223	ENST00000560445	ENO3	P13929	434 aa	Predicted RBP	13.53	□□□□□ -0.24
TPM1-223	ENST00000560445	PKM	P14618	531 aa	Known RBP	13.53	□□□□□ -0.24
TPM1-223	ENST00000560445	GABRA4	P48169	554 aa		13.53	□□□□□ -0.24
TPM1-223	ENST00000560445	FNTA	P49354	379 aa		13.53	□□□□□ -0.24
TPM1-223	ENST00000560445	DHX34	Q14147	1143 aa	Known RBP	13.53	□□□□□ -0.24
TPM1-223	ENST00000560445	KCNJ11	Q14654	390 aa		13.53	□□□□□ -0.24
TPM1-223	ENST00000560445	ZIC1	Q15915	447 aa		13.53	□□□□□ -0.24
TPM1-223	ENST00000560445	C1orf189	Q5VU69	101 aa		13.53	□□□□□ -0.24
TPM1-223	ENST00000560445	CPZ	Q66K79	652 aa		13.53	□□□□□ -0.24
TPM1-223	ENST00000560445	CNST	Q6PJW8	725 aa		13.53	□□□□□ -0.24
TPM1-223	ENST00000560445	FIGLA	Q6QHK4	219 aa		13.53	□□□□□ -0.24
TPM1-223	ENST00000560445	CILP2	Q8IUL8	1156 aa		13.53	□□□□□ -0.24
TPM1-223	ENST00000560445	VRK3	Q8IV63	474 aa		13.53	□□□□□ -0.24
TPM1-223	ENST00000560445	RASGEF1C	Q8N431	466 aa		13.53	□□□□□ -0.24
TPM1-223	ENST00000560445	LINC01555	Q8NAE3	123 aa		13.53	□□□□□ -0.24
TPM1-223	ENST00000560445	LKAAEAR1	Q8TD35	194 aa		13.53	□□□□□ -0.24
TPM1-223	ENST00000560445	SMPDL3A	Q92484	453 aa		13.53	□□□□□ -0.24
TPM1-223	ENST00000560445	FAM167B	Q9BTA0	163 aa		13.53	□□□□□ -0.24
TPM1-223	ENST00000560445	TRIM55	Q9BYV6	548 aa		13.53	□□□□□ -0.24
TPM1-223	ENST00000560445	SPRTN	Q9H040	489 aa	Predicted RBP	13.53	□□□□□ -0.24
TPM1-223	ENST00000560445	GRPEL1	Q9HAV7	217 aa		13.53	□□□□□ -0.24
TPM1-223	ENST00000560445		H3BMH7	237 aa		13.52	□□□□□ -0.25
TPM1-223	ENST00000560445	EIF3F	O00303	357 aa	Predicted RBP	13.52	□□□□□ -0.25
TPM1-223	ENST00000560445	CES2	O00748	559 aa		13.52	□□□□□ -0.25
TPM1-223	ENST00000560445	TXNDC9	O14530	226 aa		13.52	□□□□□ -0.25
TPM1-223	ENST00000560445	DSCR3	O14972	297 aa		13.52	□□□□□ -0.25
TPM1-223	ENST00000560445	USP1	O94782	785 aa		13.52	□□□□□ -0.25
TPM1-223	ENST00000560445	TPBGL	P0DKB5	382 aa		13.52	□□□□□ -0.25
TPM1-223	ENST00000560445	CBSL	P0DN79	551 aa		13.52	□□□□□ -0.25
TPM1-223	ENST00000560445	ALAS2	P22557	587 aa		13.52	□□□□□ -0.25
TPM1-223	ENST00000560445	PEBP1	P30086	187 aa	Known RBP	13.52	□□□□□ -0.25
TPM1-223	ENST00000560445	FMO4	P31512	558 aa		13.52	□□□□□ -0.25
TPM1-223	ENST00000560445	RPA3	P35244	121 aa	Predicted RBP	13.52	□□□□□ -0.25
TPM1-223	ENST00000560445	CBS	P35520	551 aa		13.52	□□□□□ -0.25
TPM1-223	ENST00000560445	CD97	P48960	835 aa		13.52	□□□□□ -0.25
TPM1-223	ENST00000560445	VPS41	P49754	854 aa		13.52	□□□□□ -0.25
TPM1-223	ENST00000560445	ATP1A4	Q13733	1029 aa		13.52	□□□□□ -0.25
TPM1-223	ENST00000560445	PTK6	Q13882	451 aa		13.52	□□□□□ -0.25
TPM1-223	ENST00000560445	CYP1B1	Q16678	543 aa		13.52	□□□□□ -0.25
TPM1-223	ENST00000560445	ZNF470	Q6ECI4	717 aa		13.52	□□□□□ -0.25
TPM1-223	ENST00000560445	UGT3A1	Q6NUS8	523 aa		13.52	□□□□□ -0.25
TPM1-223	ENST00000560445	PRMT9	Q6P2P2	845 aa		13.52	□□□□□ -0.25
TPM1-223	ENST00000560445	CCDC137	Q6PK04	289 aa	Known RBP	13.52	□□□□□ -0.25
TPM1-223	ENST00000560445	PCGF5	Q86SE9	256 aa		13.52	□□□□□ -0.25
TPM1-223	ENST00000560445	GALNT11	Q8NCW6	608 aa		13.52	□□□□□ -0.25
TPM1-223	ENST00000560445	COG1	Q8WTW3	980 aa		13.52	□□□□□ -0.25
TPM1-223	ENST00000560445	KCNJ9	Q92806	393 aa		13.52	□□□□□ -0.25
TPM1-223	ENST00000560445	MIB2	Q96AX9	1013 aa		13.52	□□□□□ -0.25
TPM1-223	ENST00000560445	ZNF669	Q96BR6	464 aa	Predicted RBP	13.52	□□□□□ -0.25
TPM1-223	ENST00000560445	BIRC8	Q96P09	236 aa		13.52	□□□□□ -0.25
TPM1-223	ENST00000560445	EBNA1BP2	Q99848	306 aa	Known RBP	13.52	□□□□□ -0.25
TPM1-223	ENST00000560445	NAT9	Q9BTE0	207 aa		13.52	□□□□□ -0.25
TPM1-223	ENST00000560445	MENT	Q9BUN1	341 aa		13.52	□□□□□ -0.25
TPM1-223	ENST00000560445	SLAMF7	Q9NQ25	335 aa		13.52	□□□□□ -0.25
TPM1-223	ENST00000560445	CUTC	Q9NTM9	273 aa		13.52	□□□□□ -0.25
TPM1-223	ENST00000560445	DHCR7	Q9UBM7	475 aa	Known RBP	13.52	□□□□□ -0.25
TPM1-223	ENST00000560445	CDC14A	Q9UNH5	594 aa		13.52	□□□□□ -0.25
TPM1-223	ENST00000560445	LRRK2	Q5S007	2527 aa		13.51	□□□□□ -0.25
TPM1-223	ENST00000560445	PABPN1L	A6NDY0	278 aa	Known RBP	13.51	□□□□□ -0.25
TPM1-223	ENST00000560445	PCDH17	O14917	1159 aa		13.51	□□□□□ -0.25
TPM1-223	ENST00000560445	KLF7	O75840	302 aa	Predicted RBP	13.51	□□□□□ -0.25
TPM1-223	ENST00000560445	MATN4	O95460	622 aa		13.51	□□□□□ -0.25
TPM1-223	ENST00000560445	ONECUT2	O95948	504 aa		13.51	□□□□□ -0.25
TPM1-223	ENST00000560445	ARNT	P27540	789 aa		13.51	□□□□□ -0.25
TPM1-223	ENST00000560445	COIL	P38432	576 aa	Predicted RBP	13.51	□□□□□ -0.25
TPM1-223	ENST00000560445	CARS	P49589	748 aa	Known RBP	13.51	□□□□□ -0.25
TPM1-223	ENST00000560445	EMP3	P54852	163 aa		13.51	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms