RNA–Protein interactions for RNA: ENST00000557740.5

SHMT2-235, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-235ENST00000557740 P4HTMQ9NXG6 502 aa14.06□□□□□ -0.16
SHMT2-235ENST00000557740 TTC7AQ9ULT0 858 aaPredicted RBP14.06□□□□□ -0.16
SHMT2-235ENST00000557740 MAP4K5Q9Y4K4 846 aa14.06□□□□□ -0.16
SHMT2-235ENST00000557740 SPTBN1Q01082 2364 aaKnown RBP14.05□□□□□ -0.16
SHMT2-235ENST00000557740 TNRC6AQ8NDV7 1962 aaKnown RBP14.05□□□□□ -0.16
SHMT2-235ENST00000557740 PFDN6O15212 129 aa14.05□□□□□ -0.16
SHMT2-235ENST00000557740 CNOT3O75175 753 aaKnown RBP14.05□□□□□ -0.16
SHMT2-235ENST00000557740 PIM1P11309 404 aaPredicted RBP14.05□□□□□ -0.16
SHMT2-235ENST00000557740 MGAT1P26572 445 aa14.05□□□□□ -0.16
SHMT2-235ENST00000557740 CCNFP41002 786 aa14.05□□□□□ -0.16
SHMT2-235ENST00000557740 GRB7Q14451 532 aa14.05□□□□□ -0.16
SHMT2-235ENST00000557740 PRR30Q53SZ7 412 aaPredicted RBP14.05□□□□□ -0.16
SHMT2-235ENST00000557740 TCTE1Q5JU00 501 aa14.05□□□□□ -0.16
SHMT2-235ENST00000557740 RNF187Q5TA31 235 aaPredicted RBP14.05□□□□□ -0.16
SHMT2-235ENST00000557740 FHL5Q5TD97 284 aa14.05□□□□□ -0.16
SHMT2-235ENST00000557740 MRPL14Q6P1L8 145 aaKnown RBP14.05□□□□□ -0.16
SHMT2-235ENST00000557740 CNSTQ6PJW8 725 aa14.05□□□□□ -0.16
SHMT2-235ENST00000557740 FIGLAQ6QHK4 219 aa14.05□□□□□ -0.16
SHMT2-235ENST00000557740 SDCCAG8Q86SQ7 713 aaPredicted RBP14.05□□□□□ -0.16
SHMT2-235ENST00000557740 GALNT16Q8N428 558 aa14.05□□□□□ -0.16
SHMT2-235ENST00000557740 RBMXL3Q8N7X1 1067 aaKnown RBP14.05□□□□□ -0.16
SHMT2-235ENST00000557740 SELENOSQ9BQE4 189 aa14.05□□□□□ -0.16
SHMT2-235ENST00000557740 MRM3Q9HC36 420 aaKnown RBP14.05□□□□□ -0.16
SHMT2-235ENST00000557740 CUTCQ9NTM9 273 aa14.05□□□□□ -0.16
SHMT2-235ENST00000557740 SYBUQ9NX95 663 aa14.05□□□□□ -0.16
SHMT2-235ENST00000557740 C5AR2Q9P296 337 aa14.05□□□□□ -0.16
SHMT2-235ENST00000557740 RUVBL2Q9Y230 463 aaKnown RBP14.05□□□□□ -0.16
SHMT2-235ENST00000557740 FAM169AQ9Y6X4 670 aa14.05□□□□□ -0.16
SHMT2-235ENST00000557740 BLACEA4D250 179 aa14.04□□□□□ -0.16
SHMT2-235ENST00000557740 H3BMM5 538 aa14.04□□□□□ -0.16
SHMT2-235ENST00000557740 CEP104O60308 925 aa14.04□□□□□ -0.16
SHMT2-235ENST00000557740 VAPBO95292 243 aa14.04□□□□□ -0.16
SHMT2-235ENST00000557740 C1orf105O95561 183 aa14.04□□□□□ -0.16
SHMT2-235ENST00000557740 UMODP07911 640 aa14.04□□□□□ -0.16
SHMT2-235ENST00000557740 TPSB2P20231 275 aa14.04□□□□□ -0.16
SHMT2-235ENST00000557740 GRIA3P42263 894 aa14.04□□□□□ -0.16
SHMT2-235ENST00000557740 FOXL2P58012 376 aa14.04□□□□□ -0.16
SHMT2-235ENST00000557740 CDK16Q00536 496 aa14.04□□□□□ -0.16
SHMT2-235ENST00000557740 GRM7Q14831 915 aa14.04□□□□□ -0.16
SHMT2-235ENST00000557740 MYBPC3Q14896 1274 aa14.04□□□□□ -0.16
SHMT2-235ENST00000557740 TPSAB1Q15661 275 aa14.04□□□□□ -0.16
SHMT2-235ENST00000557740 CTSL3PQ5NE16 218 aa14.04□□□□□ -0.16
SHMT2-235ENST00000557740 YOD1Q5VVQ6 348 aaPredicted RBP14.04□□□□□ -0.16
SHMT2-235ENST00000557740 PPP1R32Q7Z5V6 425 aa14.04□□□□□ -0.16
SHMT2-235ENST00000557740 IQCKQ8N0W5 287 aa14.04□□□□□ -0.16
SHMT2-235ENST00000557740 Q8NA96 180 aa14.04□□□□□ -0.16
SHMT2-235ENST00000557740 TRIM58Q8NG06 486 aa14.04□□□□□ -0.16
SHMT2-235ENST00000557740 MAGEC3Q8TD91 643 aa14.04□□□□□ -0.16
SHMT2-235ENST00000557740 TM9SF4Q92544 642 aa14.04□□□□□ -0.16
SHMT2-235ENST00000557740 MFSD3Q96ES6 412 aa14.04□□□□□ -0.16
SHMT2-235ENST00000557740 MIPEPQ99797 713 aa14.04□□□□□ -0.16
SHMT2-235ENST00000557740 KIFC1Q9BW19 673 aa14.04□□□□□ -0.16
SHMT2-235ENST00000557740 LRRC4CQ9HCJ2 640 aa14.04□□□□□ -0.16
SHMT2-235ENST00000557740 HOMER3Q9NSC5 361 aa14.04□□□□□ -0.16
SHMT2-235ENST00000557740 TSR3Q9UJK0 312 aaKnown RBP14.04□□□□□ -0.16
SHMT2-235ENST00000557740 NFS1Q9Y697 457 aa14.04□□□□□ -0.16
SHMT2-235ENST00000557740 RELNP78509 3460 aa14.04□□□□□ -0.16
SHMT2-235ENST00000557740 DSCR3O14972 297 aa14.03□□□□□ -0.16
SHMT2-235ENST00000557740 IPO13O94829 963 aaKnown RBP14.03□□□□□ -0.16
SHMT2-235ENST00000557740 PAMP19021 973 aa14.03□□□□□ -0.16
SHMT2-235ENST00000557740 MCM3P25205 808 aa14.03□□□□□ -0.16
SHMT2-235ENST00000557740 ITGA3P26006 1051 aa14.03□□□□□ -0.16
SHMT2-235ENST00000557740 ARNTP27540 789 aa14.03□□□□□ -0.16
SHMT2-235ENST00000557740 PSMB5P28074 263 aa14.03□□□□□ -0.16
SHMT2-235ENST00000557740 FMO4P31512 558 aa14.03□□□□□ -0.16
SHMT2-235ENST00000557740 GCGRP47871 477 aa14.03□□□□□ -0.16
SHMT2-235ENST00000557740 KCNJ1P48048 391 aa14.03□□□□□ -0.16
SHMT2-235ENST00000557740 TERF1P54274 439 aa14.03□□□□□ -0.16
SHMT2-235ENST00000557740 SARNPP82979 210 aaKnown RBP14.03□□□□□ -0.16
SHMT2-235ENST00000557740 FCRL6Q6DN72 434 aa14.03□□□□□ -0.16
SHMT2-235ENST00000557740 LRRC8BQ6P9F7 803 aa14.03□□□□□ -0.16
SHMT2-235ENST00000557740 CES3Q6UWW8 571 aa14.03□□□□□ -0.16
SHMT2-235ENST00000557740 LPGAT1Q92604 370 aa14.03□□□□□ -0.16
SHMT2-235ENST00000557740 ILKAPQ9H0C8 392 aaPredicted RBP14.03□□□□□ -0.16
SHMT2-235ENST00000557740 WDR54Q9H977 334 aa14.03□□□□□ -0.16
SHMT2-235ENST00000557740 ATP13A2Q9NQ11 1180 aa14.03□□□□□ -0.16
SHMT2-235ENST00000557740 SLC22A11Q9NSA0 550 aa14.03□□□□□ -0.16
SHMT2-235ENST00000557740 SPATA7Q9P0W8 599 aa14.03□□□□□ -0.16
SHMT2-235ENST00000557740 CDC23Q9UJX2 597 aa14.03□□□□□ -0.16
SHMT2-235ENST00000557740 FBXL4Q9UKA2 621 aa14.03□□□□□ -0.16
SHMT2-235ENST00000557740 NXT1Q9UKK6 140 aaKnown RBP14.03□□□□□ -0.16
SHMT2-235ENST00000557740 SOX13Q9UN79 622 aa14.03□□□□□ -0.16
SHMT2-235ENST00000557740 FER1L5A0AVI2 2057 aa14.02□□□□□ -0.16
SHMT2-235ENST00000557740 KRT87PA6NCN2 255 aa14.02□□□□□ -0.17
SHMT2-235ENST00000557740 TARM1B6A8C7 271 aa14.02□□□□□ -0.17
SHMT2-235ENST00000557740 GOLGA8KD6RF30 607 aa14.02□□□□□ -0.17
SHMT2-235ENST00000557740 GOLGA8TH3BQL2 631 aa14.02□□□□□ -0.17
SHMT2-235ENST00000557740 AGPSO00116 658 aa14.02□□□□□ -0.17
SHMT2-235ENST00000557740 NIPSNAP2O75323 286 aa14.02□□□□□ -0.17
SHMT2-235ENST00000557740 ALBP02768 609 aa14.02□□□□□ -0.17
SHMT2-235ENST00000557740 ESR1P03372 595 aa14.02□□□□□ -0.17
SHMT2-235ENST00000557740 ITGAXP20702 1163 aa14.02□□□□□ -0.17
SHMT2-235ENST00000557740 MMP11P24347 488 aa14.02□□□□□ -0.17
SHMT2-235ENST00000557740 ATP5DP30049 168 aa14.02□□□□□ -0.17
SHMT2-235ENST00000557740 VPS41P49754 854 aa14.02□□□□□ -0.17
SHMT2-235ENST00000557740 VSX2P58304 361 aaPredicted RBP14.02□□□□□ -0.17
SHMT2-235ENST00000557740 NAA25Q14CX7 972 aa14.02□□□□□ -0.17
SHMT2-235ENST00000557740 TRIP13Q15645 432 aaPredicted RBP14.02□□□□□ -0.17
SHMT2-235ENST00000557740 TYSND1Q2T9J0 566 aa14.02□□□□□ -0.17
SHMT2-235ENST00000557740 CCSMST1Q4G0I0 132 aa14.02□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms