RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 C6orf136Q5SQH8 315 aa12.32□□□□□ -0.44
SHMT2-229ENST00000557348 BLOC1S3Q6QNY0 202 aa12.32□□□□□ -0.44
SHMT2-229ENST00000557348 LINC00299Q6ZSB3 139 aa12.32□□□□□ -0.44
SHMT2-229ENST00000557348 TRIM46Q7Z4K8 759 aa12.32□□□□□ -0.44
SHMT2-229ENST00000557348 TRIML2Q8N7C3 387 aa12.32□□□□□ -0.44
SHMT2-229ENST00000557348 SNX31Q8N9S9 440 aa12.32□□□□□ -0.44
SHMT2-229ENST00000557348 L3MBTL4Q8NA19 623 aa12.32□□□□□ -0.44
SHMT2-229ENST00000557348 FNDC5Q8NAU1 212 aa12.32□□□□□ -0.44
SHMT2-229ENST00000557348 GOLM1Q8NBJ4 401 aa12.32□□□□□ -0.44
SHMT2-229ENST00000557348 TNIP2Q8NFZ5 429 aa12.32□□□□□ -0.44
SHMT2-229ENST00000557348 ESAMQ96AP7 390 aa12.32□□□□□ -0.44
SHMT2-229ENST00000557348 COX4I2Q96KJ9 171 aa12.32□□□□□ -0.44
SHMT2-229ENST00000557348 ZNF597Q96LX8 424 aa12.32□□□□□ -0.44
SHMT2-229ENST00000557348 EFHD1Q9BUP0 239 aa12.32□□□□□ -0.44
SHMT2-229ENST00000557348 ZNF576Q9H609 170 aa12.32□□□□□ -0.44
SHMT2-229ENST00000557348 C8orf33Q9H7E9 229 aaPredicted RBP12.32□□□□□ -0.44
SHMT2-229ENST00000557348 CLDND1Q9NY35 253 aa12.32□□□□□ -0.44
SHMT2-229ENST00000557348 CROTQ9UKG9 612 aa12.32□□□□□ -0.44
SHMT2-229ENST00000557348 CNOT6Q9ULM6 557 aaKnown RBP12.32□□□□□ -0.44
SHMT2-229ENST00000557348 EIF3LQ9Y262 564 aaKnown RBP12.32□□□□□ -0.44
SHMT2-229ENST00000557348 MYRFQ9Y2G1 1151 aa12.32□□□□□ -0.44
SHMT2-229ENST00000557348 ASB1Q9Y576 335 aa12.32□□□□□ -0.44
SHMT2-229ENST00000557348 AP4S1Q9Y587 144 aa12.32□□□□□ -0.44
SHMT2-229ENST00000557348 A0A087WXM4 84 aa12.31□□□□□ -0.44
SHMT2-229ENST00000557348 FAM234BA2RU67 622 aa12.31□□□□□ -0.44
SHMT2-229ENST00000557348 ANHXE9PGG2 379 aa12.31□□□□□ -0.44
SHMT2-229ENST00000557348 NPIPB8E9PQR5 432 aa12.31□□□□□ -0.44
SHMT2-229ENST00000557348 SOD1P00441 154 aa12.31□□□□□ -0.44
SHMT2-229ENST00000557348 RPN2P04844 631 aa12.31□□□□□ -0.44
SHMT2-229ENST00000557348 MAPK1P28482 360 aa12.31□□□□□ -0.44
SHMT2-229ENST00000557348 NTSR1P30989 418 aa12.31□□□□□ -0.44
SHMT2-229ENST00000557348 CTSCP53634 463 aa12.31□□□□□ -0.44
SHMT2-229ENST00000557348 PSME3P61289 254 aa12.31□□□□□ -0.44
SHMT2-229ENST00000557348 TRAP1Q12931 704 aaKnown RBP12.31□□□□□ -0.44
SHMT2-229ENST00000557348 PRKG2Q13237 762 aa12.31□□□□□ -0.44
SHMT2-229ENST00000557348 LRP8Q14114 963 aa12.31□□□□□ -0.44
SHMT2-229ENST00000557348 RCAN2Q14206 197 aa12.31□□□□□ -0.44
SHMT2-229ENST00000557348 FLOT2Q14254 428 aa12.31□□□□□ -0.44
SHMT2-229ENST00000557348 GRB7Q14451 532 aa12.31□□□□□ -0.44
SHMT2-229ENST00000557348 COL19A1Q14993 1142 aa12.31□□□□□ -0.44
SHMT2-229ENST00000557348 IMPG1Q17R60 797 aa12.31□□□□□ -0.44
SHMT2-229ENST00000557348 MAP7D1Q3KQU3 841 aa12.31□□□□□ -0.44
SHMT2-229ENST00000557348 SAMD4BQ5PRF9 694 aaKnown RBP12.31□□□□□ -0.44
SHMT2-229ENST00000557348 LIPJQ5W064 366 aa12.31□□□□□ -0.44
SHMT2-229ENST00000557348 KIAA1161Q6NSJ0 714 aa12.31□□□□□ -0.44
SHMT2-229ENST00000557348 KLHL35Q6PF15 583 aa12.31□□□□□ -0.44
SHMT2-229ENST00000557348 RALGPS2Q86X27 583 aaPredicted RBP12.31□□□□□ -0.44
SHMT2-229ENST00000557348 TRAPPC5Q8IUR0 188 aa12.31□□□□□ -0.44
SHMT2-229ENST00000557348 CHERPQ8IWX8 916 aaKnown RBP12.31□□□□□ -0.44
SHMT2-229ENST00000557348 GLB1L3Q8NCI6 653 aaPredicted RBP12.31□□□□□ -0.44
SHMT2-229ENST00000557348 SMRP1Q8NCR6 262 aa12.31□□□□□ -0.44
SHMT2-229ENST00000557348 OR2T3Q8NH03 318 aa12.31□□□□□ -0.44
SHMT2-229ENST00000557348 USP7Q93009 1102 aa12.31□□□□□ -0.44
SHMT2-229ENST00000557348 MSANTD3Q96H12 275 aa12.31□□□□□ -0.44
SHMT2-229ENST00000557348 METTL2AQ96IZ6 378 aaKnown RBP12.31□□□□□ -0.44
SHMT2-229ENST00000557348 MSLNLQ96KJ4 702 aa12.31□□□□□ -0.44
SHMT2-229ENST00000557348 CDRT15Q96T59 188 aa12.31□□□□□ -0.44
SHMT2-229ENST00000557348 ACOX2Q99424 681 aa12.31□□□□□ -0.44
SHMT2-229ENST00000557348 ZBTB18Q99592 522 aa12.31□□□□□ -0.44
SHMT2-229ENST00000557348 GABRG3Q99928 467 aa12.31□□□□□ -0.44
SHMT2-229ENST00000557348 FBRSL1Q9HCM7 1045 aaKnown RBP12.31□□□□□ -0.44
SHMT2-229ENST00000557348 ITM2CQ9NQX7 267 aa12.31□□□□□ -0.44
SHMT2-229ENST00000557348 GPRC5BQ9NZH0 403 aa12.31□□□□□ -0.44
SHMT2-229ENST00000557348 SUCOQ9UBS9 1254 aaKnown RBP12.31□□□□□ -0.44
SHMT2-229ENST00000557348 B3GNT3Q9Y2A9 372 aa12.31□□□□□ -0.44
SHMT2-229ENST00000557348 A0A1B0GTL3 188 aa12.3□□□□□ -0.44
SHMT2-229ENST00000557348 A0A1W2PP18 115 aa12.3□□□□□ -0.44
SHMT2-229ENST00000557348 MANBAO00462 879 aa12.3□□□□□ -0.44
SHMT2-229ENST00000557348 LSM1O15116 133 aaKnown RBP12.3□□□□□ -0.44
SHMT2-229ENST00000557348 INPP4BO15327 924 aa12.3□□□□□ -0.44
SHMT2-229ENST00000557348 SLC22A3O75751 556 aa12.3□□□□□ -0.44
SHMT2-229ENST00000557348 POU3F3P20264 500 aaPredicted RBP12.3□□□□□ -0.44
SHMT2-229ENST00000557348 PRPH2P23942 346 aa12.3□□□□□ -0.44
SHMT2-229ENST00000557348 KIR2DL1P43626 348 aaPredicted RBP12.3□□□□□ -0.44
SHMT2-229ENST00000557348 GNPDA1P46926 289 aa12.3□□□□□ -0.44
SHMT2-229ENST00000557348 GALK1P51570 392 aa12.3□□□□□ -0.44
SHMT2-229ENST00000557348 PTCHD3Q3KNS1 767 aa12.3□□□□□ -0.44
SHMT2-229ENST00000557348 ZBED5Q49AG3 693 aa12.3□□□□□ -0.44
SHMT2-229ENST00000557348 C1QTNF12Q5T7M4 302 aa12.3□□□□□ -0.44
SHMT2-229ENST00000557348 AGBL4Q5VU57 503 aa12.3□□□□□ -0.44
SHMT2-229ENST00000557348 CACHD1Q5VU97 1274 aa12.3□□□□□ -0.44
SHMT2-229ENST00000557348 PAOXQ6QHF9 649 aa12.3□□□□□ -0.44
SHMT2-229ENST00000557348 UNC5DQ6UXZ4 953 aa12.3□□□□□ -0.44
SHMT2-229ENST00000557348 Q6ZSR9 355 aa12.3□□□□□ -0.44
SHMT2-229ENST00000557348 VRK3Q8IV63 474 aa12.3□□□□□ -0.44
SHMT2-229ENST00000557348 OR2L2Q8NH16 312 aa12.3□□□□□ -0.44
SHMT2-229ENST00000557348 HMGCLL1Q8TB92 370 aa12.3□□□□□ -0.44
SHMT2-229ENST00000557348 DNASE1L2Q92874 299 aa12.3□□□□□ -0.44
SHMT2-229ENST00000557348 CHFRQ96EP1 664 aa12.3□□□□□ -0.44
SHMT2-229ENST00000557348 COX14Q96I36 57 aa12.3□□□□□ -0.44
SHMT2-229ENST00000557348 PRPF18Q99633 342 aaKnown RBP12.3□□□□□ -0.44
SHMT2-229ENST00000557348 GRIP2Q9C0E4 1043 aa12.3□□□□□ -0.44
SHMT2-229ENST00000557348 OR2AG1Q9H205 316 aa12.3□□□□□ -0.44
SHMT2-229ENST00000557348 ELOVL6Q9H5J4 265 aa12.3□□□□□ -0.44
SHMT2-229ENST00000557348 RHBDL2Q9NX52 303 aa12.3□□□□□ -0.44
SHMT2-229ENST00000557348 SCHIP1Q9P0W5 487 aaPredicted RBP12.3□□□□□ -0.44
SHMT2-229ENST00000557348 KLQ9UEF7 1012 aa12.3□□□□□ -0.44
SHMT2-229ENST00000557348 LEF1Q9UJU2 399 aaPredicted RBP12.3□□□□□ -0.44
SHMT2-229ENST00000557348 DENND4AQ7Z401 1863 aa12.3□□□□□ -0.44
SHMT2-229ENST00000557348 MGAT4DA6NG13 374 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms