RNA–Protein interactions for RNA: ENST00000556412.4

VIPAS39-208, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,832 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-208ENST00000556412 TMBIM4Q9HC24 238 aa13.58□□□□□ -0.24
VIPAS39-208ENST00000556412 CCDC177Q9NQR7 707 aaPredicted RBP13.58□□□□□ -0.24
VIPAS39-208ENST00000556412 ZNF446Q9NWS9 450 aa13.58□□□□□ -0.24
VIPAS39-208ENST00000556412 NUDT4Q9NZJ9 180 aa13.58□□□□□ -0.24
VIPAS39-208ENST00000556412 SENP1Q9P0U3 644 aa13.58□□□□□ -0.24
VIPAS39-208ENST00000556412 FAM186AA6NE01 2351 aa13.58□□□□□ -0.24
VIPAS39-208ENST00000556412 COL5A1P20908 1838 aaPredicted RBP13.58□□□□□ -0.24
VIPAS39-208ENST00000556412 E7ENX8 843 aa13.57□□□□□ -0.24
VIPAS39-208ENST00000556412 NTN3O00634 580 aaPredicted RBP13.57□□□□□ -0.24
VIPAS39-208ENST00000556412 KIF1CO43896 1103 aaKnown RBP13.57□□□□□ -0.24
VIPAS39-208ENST00000556412 CDK4P11802 303 aa13.57□□□□□ -0.24
VIPAS39-208ENST00000556412 UGT2B7P16662 529 aa13.57□□□□□ -0.24
VIPAS39-208ENST00000556412 PEBP1P30086 187 aaKnown RBP13.57□□□□□ -0.24
VIPAS39-208ENST00000556412 CRHR1P34998 444 aa13.57□□□□□ -0.24
VIPAS39-208ENST00000556412 TBPL1P62380 186 aa13.57□□□□□ -0.24
VIPAS39-208ENST00000556412 CDKL1Q00532 357 aa13.57□□□□□ -0.24
VIPAS39-208ENST00000556412 TAP2Q03519 686 aa13.57□□□□□ -0.24
VIPAS39-208ENST00000556412 SLC18A2Q05940 514 aa13.57□□□□□ -0.24
VIPAS39-208ENST00000556412 PUM1Q14671 1186 aaKnown RBP eCLIP13.57□□□□□ -0.24
VIPAS39-208ENST00000556412 SF1Q15637 639 aaKnown RBP13.57□□□□□ -0.24
VIPAS39-208ENST00000556412 PFKFB4Q16877 469 aa13.57□□□□□ -0.24
VIPAS39-208ENST00000556412 HES3Q5TGS1 186 aa13.57□□□□□ -0.24
VIPAS39-208ENST00000556412 WDR74Q6RFH5 385 aaPredicted RBP13.57□□□□□ -0.24
VIPAS39-208ENST00000556412 EXOC3L1Q86VI1 746 aa13.57□□□□□ -0.24
VIPAS39-208ENST00000556412 FAM20CQ8IXL6 584 aa13.57□□□□□ -0.24
VIPAS39-208ENST00000556412 FBXO39Q8N4B4 442 aa13.57□□□□□ -0.24
VIPAS39-208ENST00000556412 BANPQ8N9N5 519 aa13.57□□□□□ -0.24
VIPAS39-208ENST00000556412 ESAMQ96AP7 390 aa13.57□□□□□ -0.24
VIPAS39-208ENST00000556412 SLC22A18Q96BI1 424 aa13.57□□□□□ -0.24
VIPAS39-208ENST00000556412 PPM1MQ96MI6 270 aa13.57□□□□□ -0.24
VIPAS39-208ENST00000556412 KLHL25Q9H0H3 589 aa13.57□□□□□ -0.24
VIPAS39-208ENST00000556412 ACBD3Q9H3P7 528 aa13.57□□□□□ -0.24
VIPAS39-208ENST00000556412 SEMA6CQ9H3T2 930 aa13.57□□□□□ -0.24
VIPAS39-208ENST00000556412 TAC3Q9UHF0 121 aa13.57□□□□□ -0.24
VIPAS39-208ENST00000556412 GRID1Q9ULK0 1009 aa13.57□□□□□ -0.24
VIPAS39-208ENST00000556412 ENTPD2Q9Y5L3 495 aa13.57□□□□□ -0.24
VIPAS39-208ENST00000556412 CABIN1Q9Y6J0 2220 aa13.57□□□□□ -0.24
VIPAS39-208ENST00000556412 MATN2O00339 956 aa13.57□□□□□ -0.24
VIPAS39-208ENST00000556412 SMIM24O75264 130 aa13.57□□□□□ -0.24
VIPAS39-208ENST00000556412 ERGP11308 486 aa13.57□□□□□ -0.24
VIPAS39-208ENST00000556412 CDH3P22223 829 aa13.57□□□□□ -0.24
VIPAS39-208ENST00000556412 PRDX3P30048 256 aaKnown RBP13.57□□□□□ -0.24
VIPAS39-208ENST00000556412 HNMTP50135 292 aa13.57□□□□□ -0.24
VIPAS39-208ENST00000556412 KIR2DS3Q14952 304 aa13.57□□□□□ -0.24
VIPAS39-208ENST00000556412 SULT1C3Q6IMI6 304 aa13.57□□□□□ -0.24
VIPAS39-208ENST00000556412 TMEM71Q6P5X7 295 aa13.57□□□□□ -0.24
VIPAS39-208ENST00000556412 B3GNT8Q7Z7M8 397 aa13.57□□□□□ -0.24
VIPAS39-208ENST00000556412 RCBTB1Q8NDN9 531 aa13.57□□□□□ -0.24
VIPAS39-208ENST00000556412 RHBDF1Q96CC6 855 aa13.57□□□□□ -0.24
VIPAS39-208ENST00000556412 CCDC74BQ96LY2 380 aa13.57□□□□□ -0.24
VIPAS39-208ENST00000556412 MIPEPQ99797 713 aa13.57□□□□□ -0.24
VIPAS39-208ENST00000556412 KCNK9Q9NPC2 374 aa13.57□□□□□ -0.24
VIPAS39-208ENST00000556412 POMT2Q9UKY4 750 aa13.57□□□□□ -0.24
VIPAS39-208ENST00000556412 PTPRZ1P23471 2315 aaPredicted RBP13.57□□□□□ -0.24
VIPAS39-208ENST00000556412 MT-CO3P00414 261 aa13.56□□□□□ -0.24
VIPAS39-208ENST00000556412 OAS2P29728 719 aaKnown RBP13.56□□□□□ -0.24
VIPAS39-208ENST00000556412 HOXD11P31277 338 aaPredicted RBP13.56□□□□□ -0.24
VIPAS39-208ENST00000556412 GDF5P43026 501 aa13.56□□□□□ -0.24
VIPAS39-208ENST00000556412 ID4P47928 161 aa13.56□□□□□ -0.24
VIPAS39-208ENST00000556412 HSPA7P48741 367 aa13.56□□□□□ -0.24
VIPAS39-208ENST00000556412 SEPHS1P49903 392 aa13.56□□□□□ -0.24
VIPAS39-208ENST00000556412 MAGOHP61326 146 aaKnown RBP13.56□□□□□ -0.24
VIPAS39-208ENST00000556412 PTCHD3Q3KNS1 767 aa13.56□□□□□ -0.24
VIPAS39-208ENST00000556412 CACHD1Q5VU97 1274 aa13.56□□□□□ -0.24
VIPAS39-208ENST00000556412 CAPN13Q6MZZ7 669 aaPredicted RBP13.56□□□□□ -0.24
VIPAS39-208ENST00000556412 SPESP1Q6UW49 350 aa13.56□□□□□ -0.24
VIPAS39-208ENST00000556412 ZNF574Q6ZN55 896 aaPredicted RBP13.56□□□□□ -0.24
VIPAS39-208ENST00000556412 TCAIMQ8N3R3 496 aa13.56□□□□□ -0.24
VIPAS39-208ENST00000556412 PDPRQ8NCN5 879 aa13.56□□□□□ -0.24
VIPAS39-208ENST00000556412 OR4D9Q8NGE8 314 aa13.56□□□□□ -0.24
VIPAS39-208ENST00000556412 HMGCLL1Q8TB92 370 aa13.56□□□□□ -0.24
VIPAS39-208ENST00000556412 PHF21BQ96EK2 531 aa13.56□□□□□ -0.24
VIPAS39-208ENST00000556412 OR2A14Q96R47 310 aa13.56□□□□□ -0.24
VIPAS39-208ENST00000556412 MAP3K3Q99759 626 aa13.56□□□□□ -0.24
VIPAS39-208ENST00000556412 EMCNQ9ULC0 261 aa13.56□□□□□ -0.24
VIPAS39-208ENST00000556412 CLCA2Q9UQC9 943 aa13.56□□□□□ -0.24
VIPAS39-208ENST00000556412 KLHL20Q9Y2M5 609 aa13.56□□□□□ -0.24
VIPAS39-208ENST00000556412 PCDHB11Q9Y5F2 797 aa13.56□□□□□ -0.24
VIPAS39-208ENST00000556412 DMXL1Q9Y485 3027 aa13.56□□□□□ -0.24
VIPAS39-208ENST00000556412 IGHV5-10-1A0A0J9YXX1 117 aa13.55□□□□□ -0.24
VIPAS39-208ENST00000556412 A0A1W2PPV9 198 aa13.55□□□□□ -0.24
VIPAS39-208ENST00000556412 CCDC189A1A4V9 331 aa13.55□□□□□ -0.24
VIPAS39-208ENST00000556412 MAP2K7O14733 419 aa13.55□□□□□ -0.24
VIPAS39-208ENST00000556412 CCNT2O60583 730 aaKnown RBP13.55□□□□□ -0.24
VIPAS39-208ENST00000556412 WDR47O94967 919 aa13.55□□□□□ -0.24
VIPAS39-208ENST00000556412 MTHFD2P13995 350 aa13.55□□□□□ -0.24
VIPAS39-208ENST00000556412 PVRP15151 417 aa13.55□□□□□ -0.24
VIPAS39-208ENST00000556412 TAC1P20366 129 aa13.55□□□□□ -0.24
VIPAS39-208ENST00000556412 ARL4DP49703 201 aa13.55□□□□□ -0.24
VIPAS39-208ENST00000556412 AGTR2P50052 363 aa13.55□□□□□ -0.24
VIPAS39-208ENST00000556412 INHBCP55103 352 aa13.55□□□□□ -0.24
VIPAS39-208ENST00000556412 SQSTM1Q13501 440 aa13.55□□□□□ -0.24
VIPAS39-208ENST00000556412 CLPPQ16740 277 aaPredicted RBP13.55□□□□□ -0.24
VIPAS39-208ENST00000556412 ZXDCQ2QGD7 858 aaPredicted RBP13.55□□□□□ -0.24
VIPAS39-208ENST00000556412 CCDC153Q494R4 210 aa13.55□□□□□ -0.24
VIPAS39-208ENST00000556412 PRAMEF13Q5VWM6 474 aa13.55□□□□□ -0.24
VIPAS39-208ENST00000556412 LRRC56Q8IYG6 542 aaPredicted RBP13.55□□□□□ -0.24
VIPAS39-208ENST00000556412 PTGR2Q8N8N7 351 aaPredicted RBP13.55□□□□□ -0.24
VIPAS39-208ENST00000556412 TCP10LQ8TDR4 215 aa13.55□□□□□ -0.24
VIPAS39-208ENST00000556412 ARL8AQ96BM9 186 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms